View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12174_low_19 (Length: 332)

Name: NF12174_low_19
Description: NF12174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12174_low_19
NF12174_low_19
[»] chr4 (9 HSPs)
chr4 (195-323)||(53477285-53477413)
chr4 (18-97)||(53477497-53477576)
chr4 (255-316)||(13991457-13991518)
chr4 (255-307)||(7634030-7634082)
chr4 (274-319)||(22486850-22486894)
chr4 (255-323)||(10494853-10494921)
chr4 (255-319)||(13990752-13990816)
chr4 (269-308)||(50519231-50519270)
chr4 (275-317)||(7724151-7724193)
[»] chr1 (8 HSPs)
chr1 (255-308)||(12944066-12944119)
chr1 (255-319)||(50713663-50713727)
chr1 (275-317)||(8221458-8221500)
chr1 (199-323)||(8967875-8968001)
chr1 (269-308)||(10927158-10927197)
chr1 (255-319)||(10928239-10928303)
chr1 (269-309)||(23987536-23987576)
chr1 (279-319)||(31915524-31915564)
[»] chr8 (7 HSPs)
chr8 (255-319)||(14130115-14130179)
chr8 (255-317)||(25479482-25479544)
chr8 (255-308)||(30440687-30440740)
chr8 (255-319)||(24577603-24577667)
chr8 (269-320)||(24578851-24578902)
chr8 (274-319)||(20693768-20693813)
chr8 (275-319)||(2687712-2687756)
[»] chr7 (9 HSPs)
chr7 (255-307)||(8916464-8916516)
chr7 (269-319)||(24840107-24840157)
chr7 (255-318)||(11000902-11000965)
chr7 (269-319)||(1690206-1690256)
chr7 (275-308)||(1369775-1369808)
chr7 (252-301)||(18790265-18790314)
chr7 (279-319)||(3778783-3778823)
chr7 (255-323)||(6451821-6451889)
chr7 (255-315)||(35814821-35814881)
[»] chr2 (3 HSPs)
chr2 (244-323)||(12123967-12124046)
chr2 (255-317)||(33051568-33051630)
chr2 (255-319)||(23457596-23457660)
[»] chr6 (5 HSPs)
chr6 (255-319)||(12778474-12778539)
chr6 (256-308)||(34373872-34373924)
chr6 (269-319)||(8049040-8049090)
chr6 (269-315)||(18727924-18727970)
chr6 (275-323)||(33215234-33215282)
[»] scaffold0251 (1 HSPs)
scaffold0251 (274-319)||(9671-9716)
[»] chr5 (1 HSPs)
chr5 (255-323)||(18252366-18252434)
[»] chr3 (1 HSPs)
chr3 (279-319)||(2472763-2472803)


Alignment Details
Target: chr4 (Bit Score: 109; Significance: 8e-55; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 195 - 323
Target Start/End: Complemental strand, 53477413 - 53477285
Alignment:
Q  195 cggtccattagagtttccttaatatttaaatacttcagttctagttatagagacaaatttttcattcaatatattttttgagagttttctcaatttctgg 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  53477413 cggtccattagagtttccttaatatttaaatacttcagttctagttatagagataaatttttcattcaatatatttttagagagttttctcaatttctgg 53477314  T
Q  295 tggattccagaacctcattttcacaggtt 323  Q
    ||||||| | |||| ||||||||||||||    
T  53477313 tggattctaaaaccccattttcacaggtt 53477285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 53477576 - 53477497
Alignment:
Q  18 acatgattcatgagttagtttgactaggaaaagcatctaaaaagattgaaaccattaatatgttgtagaaacgaaaacac 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53477576 acatgattcatgagttagtttgactaggaaaagcatctaaaaagattgaaaccattaatatgttgtagaaacgaaaacac 53477497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 316
Target Start/End: Complemental strand, 13991518 - 13991457
Alignment:
Q  255 ttcattcaatatattttttgagagttttctcaatttctggtggattccagaacctcattttc 316  Q
    |||||||||||   |||| |||||||||||||| ||||||||||||||||||||| ||||||    
T  13991518 ttcattcaataatattttagagagttttctcaaattctggtggattccagaaccttattttc 13991457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 7634030 - 7634082
Alignment:
Q  255 ttcattcaatatattttttgagagttttctcaatttctggtggattccagaac 307  Q
    |||||||||||   |||| ||||||||||||||||||||||||||||||||||    
T  7634030 ttcattcaataatattttagagagttttctcaatttctggtggattccagaac 7634082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 274 - 319
Target Start/End: Complemental strand, 22486894 - 22486850
Alignment:
Q  274 gagagttttctcaatttctggtggattccagaacctcattttcaca 319  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||    
T  22486894 gagagttttctcaatttctggtggattccggaacct-attttcaca 22486850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 323
Target Start/End: Original strand, 10494853 - 10494921
Alignment:
Q  255 ttcattcaatatattttttgagagttttctcaatttctggtggattccagaacctcattttcacaggtt 323  Q
    |||||||||||   |||| ||||||||||||||||||||||| ||||| ||||   |||||||||||||    
T  10494853 ttcattcaataatattttagagagttttctcaatttctggtgaattccggaactctattttcacaggtt 10494921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 319
Target Start/End: Complemental strand, 13990816 - 13990752
Alignment:
Q  255 ttcattcaatatattttttgagagttttctcaatttctggtggattccagaacctcattttcaca 319  Q
    |||||||||||   |||| ||||||||| |||||||||| ||||||||||||||  |||||||||    
T  13990816 ttcattcaataatattttagagagttttttcaatttctgatggattccagaaccctattttcaca 13990752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 269 - 308
Target Start/End: Complemental strand, 50519270 - 50519231
Alignment:
Q  269 tttttgagagttttctcaatttctggtggattccagaacc 308  Q
    |||| ||||||||||||||||||| |||||||||||||||    
T  50519270 ttttagagagttttctcaatttctagtggattccagaacc 50519231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 317
Target Start/End: Complemental strand, 7724193 - 7724151
Alignment:
Q  275 agagttttctcaatttctggtggattccagaacctcattttca 317  Q
    |||||||||||||||||||||||||||| |||||  |||||||    
T  7724193 agagttttctcaatttctggtggattccggaaccctattttca 7724151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 255 - 308
Target Start/End: Original strand, 12944066 - 12944119
Alignment:
Q  255 ttcattcaatatattttttgagagttttctcaatttctggtggattccagaacc 308  Q
    ||||||||||||  |||| |||||||||||||||||||||||||||||||||||    
T  12944066 ttcattcaatattattttagagagttttctcaatttctggtggattccagaacc 12944119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 255 - 319
Target Start/End: Original strand, 50713663 - 50713727
Alignment:
Q  255 ttcattcaatatattttttgagagttttctcaatttctggtggattccagaacctcattttcaca 319  Q
    |||||||||||   ||||||||||||||||||||||||||||||||||  ||||  |||||||||    
T  50713663 ttcattcaataatatttttgagagttttctcaatttctggtggattccgaaaccctattttcaca 50713727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 317
Target Start/End: Original strand, 8221458 - 8221500
Alignment:
Q  275 agagttttctcaatttctggtggattccagaacctcattttca 317  Q
    ||||||||||||||||||||||||||||||||||  |||||||    
T  8221458 agagttttctcaatttctggtggattccagaaccctattttca 8221500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 323
Target Start/End: Complemental strand, 8968001 - 8967875
Alignment:
Q  199 ccattagagtttccttaatatttaaatacttcagttctagttatagagacaaattt--ttcattcaatatattttttgagagttttctcaatttctggtg 296  Q
    ||||||||||||||||  ||||||||||||||  || ||| || |||||||  |||  |||||||||||   |||  |||||||||| |||||| |||||    
T  8968001 ccattagagtttccttggtatttaaatacttcgattttagctagagagacagttttcattcattcaataatatttcagagagttttcacaatttttggtg 8967902  T
Q  297 gattccagaacctcattttcacaggtt 323  Q
    |||||  |||||  ||||||| |||||    
T  8967901 gattctggaaccctattttcataggtt 8967875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 269 - 308
Target Start/End: Original strand, 10927158 - 10927197
Alignment:
Q  269 tttttgagagttttctcaatttctggtggattccagaacc 308  Q
    |||| ||||||||||||||||||||||||||||| |||||    
T  10927158 ttttagagagttttctcaatttctggtggattccggaacc 10927197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 319
Target Start/End: Original strand, 10928239 - 10928303
Alignment:
Q  255 ttcattcaatatattttttgagagttttctcaatttctggtggattccagaacctcattttcaca 319  Q
    |||||||||||   |||| ||||||||||||||||| | |||||||||  ||||| |||||||||    
T  10928239 ttcattcaatagtattttagagagttttctcaatttatagtggattccgaaaccttattttcaca 10928303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 309
Target Start/End: Original strand, 23987536 - 23987576
Alignment:
Q  269 tttttgagagttttctcaatttctggtggattccagaacct 309  Q
    |||| ||||||| ||||||||||||||||||||| ||||||    
T  23987536 ttttagagagttatctcaatttctggtggattccggaacct 23987576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 319
Target Start/End: Original strand, 31915524 - 31915564
Alignment:
Q  279 ttttctcaatttctggtggattccagaacctcattttcaca 319  Q
    |||||||||||||||||||||||| |||||  |||||||||    
T  31915524 ttttctcaatttctggtggattccggaaccctattttcaca 31915564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 255 - 319
Target Start/End: Original strand, 14130115 - 14130179
Alignment:
Q  255 ttcattcaatatattttttgagagttttctcaatttctggtggattccagaacctcattttcaca 319  Q
    |||||||||||   |||| ||||||||||||||||||||||||||||| |||||| |||||||||    
T  14130115 ttcattcaataatattttggagagttttctcaatttctggtggattccggaaccttattttcaca 14130179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 317
Target Start/End: Complemental strand, 25479544 - 25479482
Alignment:
Q  255 ttcattcaatatattttttgagagttttctcaatttctggtggattccagaacctcattttca 317  Q
    ||||||||||| | |||  |||||||||||||| |||||||||||||| |||||| |||||||    
T  25479544 ttcattcaataaaatttcagagagttttctcaaattctggtggattccggaaccttattttca 25479482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 255 - 308
Target Start/End: Original strand, 30440687 - 30440740
Alignment:
Q  255 ttcattcaatatattttttgagagttttctcaatttctggtggattccagaacc 308  Q
    |||||||||||   |||| ||||||||||||||||||||||||||| |||||||    
T  30440687 ttcattcaataatattttagagagttttctcaatttctggtggatttcagaacc 30440740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 319
Target Start/End: Complemental strand, 24577667 - 24577603
Alignment:
Q  255 ttcattcaatatattttttgagagttttctcaatttctggtggattccagaacctcattttcaca 319  Q
    |||||||||||   |||| ||||||||||||||||||||||||||| |  |||| ||||||||||    
T  24577667 ttcattcaataatattttagagagttttctcaatttctggtggattacgaaaccccattttcaca 24577603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 269 - 320
Target Start/End: Complemental strand, 24578902 - 24578851
Alignment:
Q  269 tttttgagagttttctcaatttctggtggattccagaacctcattttcacag 320  Q
    |||| |||||||||| |||||||| |||||||||||||||  ||||||||||    
T  24578902 ttttagagagttttcacaatttctagtggattccagaaccctattttcacag 24578851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 319
Target Start/End: Original strand, 20693768 - 20693813
Alignment:
Q  274 gagagttttctcaatttctggtggattccagaacctcattttcaca 319  Q
    |||||||||||||||||||| |||||||| |||||  |||||||||    
T  20693768 gagagttttctcaatttctgatggattccggaaccatattttcaca 20693813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 319
Target Start/End: Original strand, 2687712 - 2687756
Alignment:
Q  275 agagttttctcaatttctggtggattccagaacctcattttcaca 319  Q
    |||||||||||||||||| |||||||| ||||||  |||||||||    
T  2687712 agagttttctcaatttcttgtggattctagaaccctattttcaca 2687756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 8916516 - 8916464
Alignment:
Q  255 ttcattcaatatattttttgagagttttctcaatttctggtggattccagaac 307  Q
    |||||||||||   |||| ||||||||||||||||||||||||||||||||||    
T  8916516 ttcattcaataatattttagagagttttctcaatttctggtggattccagaac 8916464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 319
Target Start/End: Original strand, 24840107 - 24840157
Alignment:
Q  269 tttttgagagttttctcaatttctggtggattccagaacctcattttcaca 319  Q
    |||| ||||||||||||||||||||||||||||| |||||  |||||||||    
T  24840107 ttttagagagttttctcaatttctggtggattccggaaccctattttcaca 24840157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 318
Target Start/End: Complemental strand, 11000965 - 11000902
Alignment:
Q  255 ttcattcaatatattttttgagagttttctcaatttctggtggattccagaacctcattttcac 318  Q
    |||||||||||   |||| |||||||||| |||||||||||||||||| |||||  ||||||||    
T  11000965 ttcattcaataatattttagagagttttcccaatttctggtggattcctgaaccctattttcac 11000902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 319
Target Start/End: Complemental strand, 1690256 - 1690206
Alignment:
Q  269 tttttgagagttttctcaatttctggtggattccagaacctcattttcaca 319  Q
    |||| |||| ||||||||||||||| ||||||||||||||  |||||||||    
T  1690256 ttttagagaattttctcaatttctgatggattccagaaccctattttcaca 1690206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 308
Target Start/End: Original strand, 1369775 - 1369808
Alignment:
Q  275 agagttttctcaatttctggtggattccagaacc 308  Q
    |||||||||||||||||||||||||||| |||||    
T  1369775 agagttttctcaatttctggtggattccggaacc 1369808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 301
Target Start/End: Complemental strand, 18790314 - 18790265
Alignment:
Q  252 tttttcattcaatatattttttgagagttttctcaatttctggtggattc 301  Q
    ||||||||||| ||   |||| ||||||||||||||||||||||||||||    
T  18790314 tttttcattcagtaatattttagagagttttctcaatttctggtggattc 18790265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 319
Target Start/End: Complemental strand, 3778823 - 3778783
Alignment:
Q  279 ttttctcaatttctggtggattccagaacctcattttcaca 319  Q
    |||||||||||||||||||||||| |||||  |||||||||    
T  3778823 ttttctcaatttctggtggattccggaaccctattttcaca 3778783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 323
Target Start/End: Complemental strand, 6451889 - 6451821
Alignment:
Q  255 ttcattcaatatattttttgagagttttctcaatttctggtggattccagaacctcattttcacaggtt 323  Q
    |||||||||||   |||| ||||||||| ||||||| || ||||||||  ||||| |||||||||||||    
T  6451889 ttcattcaataatattttagagagttttttcaatttttgttggattccgaaaccttattttcacaggtt 6451821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 315
Target Start/End: Original strand, 35814821 - 35814881
Alignment:
Q  255 ttcattcaatatattttttgagagttttctcaatttctggtggattccagaacctcatttt 315  Q
    |||||||||||   |||| ||||||||||||||||| |||| ||||| ||||||| |||||    
T  35814821 ttcattcaataatattttagagagttttctcaatttatggtagattcaagaaccttatttt 35814881  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 323
Target Start/End: Complemental strand, 12124046 - 12123967
Alignment:
Q  244 gagacaaatttttcattcaatatattttttgagagttttctcaatttctggtggattccagaacctcattttcacaggtt 323  Q
    ||||||| |||||||||| ||| | |||  |||| |||||||||||| ||||||||||| |||||  |||||||||||||    
T  12124046 gagacaattttttcattctataaaatttcagagatttttctcaatttttggtggattcctgaaccatattttcacaggtt 12123967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 317
Target Start/End: Original strand, 33051568 - 33051630
Alignment:
Q  255 ttcattcaatatattttttgagagttttctcaatttctggtggattccagaacctcattttca 317  Q
    |||||||||||   |||| ||||||||||||||||||| |||||||||||||||  |||||||    
T  33051568 ttcattcaataatattttagagagttttctcaatttctagtggattccagaaccctattttca 33051630  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 319
Target Start/End: Original strand, 23457596 - 23457660
Alignment:
Q  255 ttcattcaatatattttttgagagttttctcaatttctggtggattccagaacctcattttcaca 319  Q
    |||||||||||   |||| ||||||||||||||||| ||||||||||| |||||  |||||||||    
T  23457596 ttcattcaataatattttagagagttttctcaatttttggtggattccggaaccctattttcaca 23457660  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 255 - 319
Target Start/End: Complemental strand, 12778539 - 12778474
Alignment:
Q  255 ttcattcaatatatttttt-gagagttttctcaatttctggtggattccagaacctcattttcaca 319  Q
    ||||||||||| ||||| | |||  ||||||||||||||||| ||||||||||||| |||||||||    
T  12778539 ttcattcaataaattttatagagttttttctcaatttctggtagattccagaaccttattttcaca 12778474  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 308
Target Start/End: Complemental strand, 34373924 - 34373872
Alignment:
Q  256 tcattcaatatattttttgagagttttctcaatttctggtggattccagaacc 308  Q
    ||||||||||   |||| |||||||||||||||||||||||||||||| ||||    
T  34373924 tcattcaataatattttagagagttttctcaatttctggtggattccataacc 34373872  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 319
Target Start/End: Complemental strand, 8049090 - 8049040
Alignment:
Q  269 tttttgagagttttctcaatttctggtggattccagaacctcattttcaca 319  Q
    |||| |||||||||||||||||||||||||| || || ||| |||||||||    
T  8049090 ttttagagagttttctcaatttctggtggatcccggagccttattttcaca 8049040  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 315
Target Start/End: Complemental strand, 18727970 - 18727924
Alignment:
Q  269 tttttgagagttttctcaatttctggtggattccagaacctcatttt 315  Q
    |||| ||||||||||||||||||||||||||| | |||||| |||||    
T  18727970 ttttagagagttttctcaatttctggtggatttcggaaccttatttt 18727924  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 33215282 - 33215234
Alignment:
Q  275 agagttttctcaatttctggtggattccagaacctcattttcacaggtt 323  Q
    |||||||| ||||||||||||||||| | |||| | |||||||||||||    
T  33215282 agagttttttcaatttctggtggattacggaacttgattttcacaggtt 33215234  T

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Target: scaffold0251 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 319
Target Start/End: Original strand, 9671 - 9716
Alignment:
Q  274 gagagttttctcaatttctggtggattccagaacctcattttcaca 319  Q
    ||||||||||||||||||||||||||| | |||||  |||||||||    
T  9671 gagagttttctcaatttctggtggatttcggaaccctattttcaca 9716  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 323
Target Start/End: Original strand, 18252366 - 18252434
Alignment:
Q  255 ttcattcaatatattttttgagagttttctcaatttctggtggattccagaacctcattttcacaggtt 323  Q
    |||||||||||   ||||  |||||||||||||||||| |||||||  ||||||  |||||||||||||    
T  18252366 ttcattcaataatattttaaagagttttctcaatttctagtggattatagaaccctattttcacaggtt 18252434  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 319
Target Start/End: Complemental strand, 2472803 - 2472763
Alignment:
Q  279 ttttctcaatttctggtggattccagaacctcattttcaca 319  Q
    |||||||||||||||||||||||| |||||  |||||||||    
T  2472803 ttttctcaatttctggtggattccggaaccctattttcaca 2472763  T

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