View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12174_low_20 (Length: 312)

Name: NF12174_low_20
Description: NF12174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12174_low_20
NF12174_low_20
[»] chr1 (3 HSPs)
chr1 (18-171)||(9799142-9799295)
chr1 (22-171)||(9790124-9790276)
chr1 (224-300)||(9799013-9799089)
[»] chr4 (2 HSPs)
chr4 (239-285)||(20246231-20246277)
chr4 (254-290)||(13985941-13985977)
[»] scaffold0014 (1 HSPs)
scaffold0014 (254-290)||(97940-97976)
[»] chr7 (1 HSPs)
chr7 (254-290)||(16254471-16254507)
[»] chr6 (1 HSPs)
chr6 (254-290)||(26129191-26129227)
[»] chr3 (2 HSPs)
chr3 (254-290)||(31197296-31197332)
chr3 (254-290)||(52770984-52771020)


Alignment Details
Target: chr1 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 9799295 - 9799142
Alignment:
Q  18 caaattaacttgtgctctaagtttcctttaccaagtaccttacatagaatagcacagcttatagagtttgttagttacagatgttatacagttagatagc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9799295 caaattaacttgtgctctaagtttcctttaccaagtaccttacatagaatagcacagcttatagagtttgttagttacagatgttatacagttagatagc 9799196  T
Q  118 ccctatataaacatatattgtaactaactcttatcattgaataacagaatatac 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9799195 ccctatataaacatatattgtaactaactcttatcattgaataacagaatatac 9799142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 22 - 171
Target Start/End: Complemental strand, 9790276 - 9790124
Alignment:
Q  22 ttaacttgtgctctaagtttcctttaccaagtaccttacatagaatagcacagcttatagagtttgttagttacagatgttatacagttag---atagcc 118  Q
    |||||||||||| ||||||||| |||||| ||||| |||||||||||||||| |||||||||||||| |||||||| ||||||||||||||   ||| ||    
T  9790276 ttaacttgtgctttaagtttcccttaccatgtaccctacatagaatagcacaacttatagagtttgtcagttacagctgttatacagttagatcatatcc 9790177  T
Q  119 cctatataaacatatattgtaactaactcttatcattgaataacagaatatac 171  Q
     ||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  9790176 tctatataaacatatattgtaactaactcacatcattgaataacagaatatac 9790124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 224 - 300
Target Start/End: Complemental strand, 9799089 - 9799013
Alignment:
Q  224 atcatcatcaagaagatgatgaacttcatgatggtatcaaagctcttttgagcactgctgcgcatcgctttcttctc 300  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9799089 atcatcatcaagaagatgatgaacttcatgatggtatcagagctcttttgagcactgctgcgcatcgctttcttctc 9799013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 285
Target Start/End: Complemental strand, 20246277 - 20246231
Alignment:
Q  239 atgatgaacttcatgatggtatcaaagctcttttgagcactgctgcg 285  Q
    |||| ||||||||||||||||||||| ||||||||||| ||| ||||    
T  20246277 atgacgaacttcatgatggtatcaaatctcttttgagctctgatgcg 20246231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 13985941 - 13985977
Alignment:
Q  254 atggtatcaaagctcttttgagcactgctgcgcatcg 290  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  13985941 atggtatcagagctcttttgagctctgctgcgcatcg 13985977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 97976 - 97940
Alignment:
Q  254 atggtatcaaagctcttttgagcactgctgcgcatcg 290  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  97976 atggtatcagagctcttttgagctctgctgcgcatcg 97940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 16254471 - 16254507
Alignment:
Q  254 atggtatcaaagctcttttgagcactgctgcgcatcg 290  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  16254471 atggtatcagagctcttttgagctctgctgcgcatcg 16254507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 26129191 - 26129227
Alignment:
Q  254 atggtatcaaagctcttttgagcactgctgcgcatcg 290  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  26129191 atggtatcagagctcttttgagctctgctgcgcatcg 26129227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 31197332 - 31197296
Alignment:
Q  254 atggtatcaaagctcttttgagcactgctgcgcatcg 290  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  31197332 atggtatcagagctcttttgagctctgctgcgcatcg 31197296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 52770984 - 52771020
Alignment:
Q  254 atggtatcaaagctcttttgagcactgctgcgcatcg 290  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  52770984 atggtatcagagctcttttgagctctgctgcgcatcg 52771020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University