View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12174_low_21 (Length: 297)
Name: NF12174_low_21
Description: NF12174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12174_low_21 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 279
Target Start/End: Complemental strand, 9411845 - 9411582
Alignment:
| Q |
16 |
ttctgctctctgtgagagaccaaccttgaggtctttgtcctttactaattattttgaaattaaaaacattgcaatgttgtatgaactcgttgggaactat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9411845 |
ttctgctctctgtgagagaccaaccttgaggtctttgtcctttactaattattttgaaattaaaaacattgcaatgttgtatgaactcgttgggaactat |
9411746 |
T |
|
| Q |
116 |
cctttacttagtgagattaaaatggaatacgaaacacttagtgagattagtatagaaaattctaattctttgatgaattttgctgtaaggccccaattga |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9411745 |
cctttacttagtgagattaaaatggaatacgcaccacttagtgagattagtatagaaaattctaattctttgatgaattttgctgtaaggccccaattga |
9411646 |
T |
|
| Q |
216 |
agtctctaggtttggttcgcaattggttaagagataaaaacatcaaaaggtttgcttccatttt |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9411645 |
agtctctaggtttggttcgcaattggttaagagataaaaacatcaaaaggtttgcttccatttt |
9411582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 167 - 279
Target Start/End: Complemental strand, 9586981 - 9586866
Alignment:
| Q |
167 |
atagaaaattctaattctttgatgaattttgctgtaaggccccaattgaagtctctaggtttggttcgcaat---tggttaagagataaaaacatcaaaa |
263 |
Q |
| |
|
||||| |||||||| | ||||| | || ||| |||||| || |||||||||||||| | ||||| ||||||| |||||||||||||||||||||| || |
|
|
| T |
9586981 |
atagagaattctaaatttttgaaggatattgttgtaagacctcaattgaagtctcttgatttgggtcgcaatcaatggttaagagataaaaacatcataa |
9586882 |
T |
|
| Q |
264 |
ggtttgcttccatttt |
279 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
9586881 |
tgtttgcttcaatttt |
9586866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 145
Target Start/End: Complemental strand, 7554831 - 7554786
Alignment:
| Q |
100 |
actcgttgggaactatcctttacttagtgagattaaaatggaatac |
145 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
7554831 |
actcgttaagaactatccttcacttagtgagattaaactggaatac |
7554786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 1601221 - 1601179
Alignment:
| Q |
16 |
ttctgctctctgtgagagaccaaccttgaggtctttgtccttt |
58 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||| |||||| |
|
|
| T |
1601221 |
ttctgctctccgtgagagaccaacattgaggtctttatccttt |
1601179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University