View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12174_low_23 (Length: 256)
Name: NF12174_low_23
Description: NF12174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12174_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 51740587 - 51740358
Alignment:
| Q |
19 |
cgtcttccatctcttgtggttcaatagctgtatggttatttgagaacattttctcttcccctcttgctagaaaagacacaataattcctgatattattgt |
118 |
Q |
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| T |
51740587 |
cgtcttccatctcttgtggttcaatagctgtatggttatttgagaacattttctcttcccctcttgctagaaaagacacaataattcctgatattattgt |
51740488 |
T |
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| Q |
119 |
gttaagtactattgctactagcacaatgttgcaatcttctgcatttaaatcctgtatatacaataataaccaaattaagagttatcatttaataatacaa |
218 |
Q |
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| T |
51740487 |
gttaagtactattgctactagcacaacgttgcaatcttctgcatttaaatcctgtatatacaataataaccaaattaagagtaatcatttaataatacaa |
51740388 |
T |
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| Q |
219 |
atgaaactgcatgaattacctacctttgct |
248 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
51740387 |
atgaaactgcatgaattacctacctttgct |
51740358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 141
Target Start/End: Complemental strand, 10201380 - 10201260
Alignment:
| Q |
21 |
tcttccatctcttgtggttcaatagctgtatggttatttgagaacattttctcttcccctcttgctagaaaagacacaataattcctgatattattgtgt |
120 |
Q |
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| T |
10201380 |
tcttccatttcttgtggttcaattgttgtatggttgtttgaaaacattttctcttccccctttgctataaacgacacaattattcctgatattattgtgt |
10201281 |
T |
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| Q |
121 |
taagtactattgctactagca |
141 |
Q |
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| T |
10201280 |
ttaatactatcgatactagca |
10201260 |
T |
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