View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12174_low_24 (Length: 255)

Name: NF12174_low_24
Description: NF12174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12174_low_24
NF12174_low_24
[»] chr2 (6 HSPs)
chr2 (13-255)||(16815973-16816215)
chr2 (13-255)||(16855130-16855372)
chr2 (54-146)||(23008738-23008830)
chr2 (69-161)||(25533520-25533614)
chr2 (32-117)||(25923914-25923998)
chr2 (56-115)||(28922819-28922878)
[»] chr3 (8 HSPs)
chr3 (13-255)||(17142577-17142822)
chr3 (14-219)||(16227263-16227467)
chr3 (12-117)||(8766896-8767001)
chr3 (12-117)||(8771779-8771884)
chr3 (69-117)||(34275236-34275284)
chr3 (16-123)||(19166036-19166143)
chr3 (31-113)||(12769992-12770074)
chr3 (12-117)||(13586839-13586943)
[»] chr7 (6 HSPs)
chr7 (16-218)||(8315732-8315927)
chr7 (89-255)||(1586824-1586991)
chr7 (13-123)||(19202699-19202808)
chr7 (58-146)||(19155227-19155315)
chr7 (58-146)||(20754626-20754714)
chr7 (69-151)||(13251456-13251539)
[»] chr6 (6 HSPs)
chr6 (55-255)||(22571055-22571257)
chr6 (13-115)||(15455569-15455672)
chr6 (12-117)||(21844438-21844540)
chr6 (122-255)||(15455706-15455838)
chr6 (69-120)||(14072314-14072365)
chr6 (15-117)||(9869993-9870095)
[»] chr5 (8 HSPs)
chr5 (14-132)||(31213740-31213857)
chr5 (13-218)||(31598727-31598933)
chr5 (13-123)||(19054353-19054462)
chr5 (13-117)||(16783500-16783603)
chr5 (71-145)||(25405133-25405209)
chr5 (13-117)||(9826511-9826613)
chr5 (14-117)||(24319286-24319389)
chr5 (13-45)||(25405210-25405242)
[»] scaffold0711 (1 HSPs)
scaffold0711 (115-255)||(6272-6411)
[»] chr8 (6 HSPs)
chr8 (12-123)||(25231899-25232009)
chr8 (11-117)||(24721059-24721164)
chr8 (15-117)||(28857819-28857920)
chr8 (77-117)||(26828484-26828524)
chr8 (14-145)||(17964370-17964501)
chr8 (13-45)||(21320788-21320820)
[»] chr4 (4 HSPs)
chr4 (14-123)||(13130605-13130714)
chr4 (13-107)||(12609163-12609257)
chr4 (69-117)||(12402808-12402856)
chr4 (77-117)||(25097650-25097690)
[»] chr1 (2 HSPs)
chr1 (58-146)||(22790249-22790337)
chr1 (12-123)||(18828607-18828717)


Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 16815973 - 16816215
Alignment:
Q  13 gtgctcttgaatgtaagggtaaactagcctccaacgtaagtgctttgaaatgacttcctaagagtaaaataaaattaagcataaaaggaaaggttgtaaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  16815973 gtgctcttgaatgtaagggtaaactagcctccaacgtaagtgctttgaaatgacttcctaagagtaaaacaaaattaaacataaaaggaaaggttgtaaa 16816072  T
Q  113 tgtaaatgcaaggaataaaactttataagataaacttgagggttagtaatagatttaagaaatgaaattgatcagttaggaaatcttagcttagcagaaa 212  Q
    ||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16816073 tgtaaatgcaaagaataaaattttataagataaacttgaggattagtaatagatttaagaaatgaaattgatcagttaggaaatcttagcttagcagaaa 16816172  T
Q  213 ataaaaaagcatgaaaataaatcaatgagttgcctcccattca 255  Q
    ||||||||||| ||||||||||||||| |||||||||||||||    
T  16816173 ataaaaaagcaggaaaataaatcaatgggttgcctcccattca 16816215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 16855130 - 16855372
Alignment:
Q  13 gtgctcttgaatgtaagggtaaactagcctccaacgtaagtgctttgaaatgacttcctaagagtaaaataaaattaagcataaaaggaaaggttgtaaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  16855130 gtgctcttgaatgtaagggtaaactagcctccaacgtaagtgctttgaaatgacttcctaagagtaaaacaaaattaaacataaaaggaaaggttgtaaa 16855229  T
Q  113 tgtaaatgcaaggaataaaactttataagataaacttgagggttagtaatagatttaagaaatgaaattgatcagttaggaaatcttagcttagcagaaa 212  Q
    ||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16855230 tgtaaatgcaaagaataaaattttataagataaacttgaggattagtaatagatttaagaaatgaaattgatcagttaggaaatcttagcttagcagaaa 16855329  T
Q  213 ataaaaaagcatgaaaataaatcaatgagttgcctcccattca 255  Q
    ||||||||||| ||||||||||||||| |||||||||||||||    
T  16855330 ataaaaaagcaggaaaataaatcaatgggttgcctcccattca 16855372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 23008830 - 23008738
Alignment:
Q  54 gctttgaaatgacttcctaagagtaaaataaaatta-agcataaaaggaaaggttgtaaatgtaaatgcaaggaataaaactttataagataaa 146  Q
    |||||||||||| ||||||||| | ||| ||||||| ||||||||||||||| ||||||||||||||||||  ||||||  |||||||||||||    
T  23008830 gctttgaaatgatttcctaagacttaaacaaaattatagcataaaaggaaagtttgtaaatgtaaatgcaa-aaataaatttttataagataaa 23008738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 161
Target Start/End: Original strand, 25533520 - 25533614
Alignment:
Q  69 cctaagagtaaaataaaattaagcataaaaggaaaggttgtaaatgtaaatgcaagg--aataaaactttataagataa-acttgagggttagtaa 161  Q
    ||||||| ||||| ||| ||||||||||||||||||||||||||||||| |||||    ||||||  ||||||||| || ||||||||||||||||    
T  25533520 cctaagactaaaacaaatttaagcataaaaggaaaggttgtaaatgtaa-tgcaaaataaataaatttttataagaaaatacttgagggttagtaa 25533614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 25923914 - 25923998
Alignment:
Q  32 taaactagcctccaacgtaagtgctttgaaatgacttcctaagagtaaaataaaattaagcataaaaggaaaggttgtaaatgtaa 117  Q
    ||||||||||||   | ||| ||||||||| ||| | ||||||| ||||||||| | |||||||||| ||||||||||||||||||    
T  25923914 taaactagcctctgccttaaatgctttgaa-tgaatacctaagactaaaataaattgaagcataaaaagaaaggttgtaaatgtaa 25923998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 115
Target Start/End: Original strand, 28922819 - 28922878
Alignment:
Q  56 tttgaaatgacttcctaagagtaaaataaaattaagcataaaaggaaaggttgtaaatgt 115  Q
    |||||||||| | ||||| | ||||| ||| ||||| |||||||||||||||||||||||    
T  28922819 tttgaaatgaatacctaaaactaaaacaaatttaagtataaaaggaaaggttgtaaatgt 28922878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 6e-52; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 17142577 - 17142822
Alignment:
Q  13 gtgctcttgaatgtaagggtaaactagcctccaacgtaagtgctttgaaatgacttcctaagagtaaaataaa--attaagcataaaaggaaaggttgta 110  Q
    |||||||||||||||||||||||||||||||||  |||| |||||| |||| | ||||||||||||||| |||   | ||||||||||||||||||||||    
T  17142577 gtgctcttgaatgtaagggtaaactagcctccactgtaaatgctttaaaattatttcctaagagtaaaaaaaagcttaaagcataaaaggaaaggttgta 17142676  T
Q  111 aatgtaaatgc-aaggaataaaactttataagat-aaacttgagggttagtaatagatttaagaaatgaaattgatcagttaggaaatcttagcttagca 208  Q
    ||||||||||| || |||||||| |||||||||| |||||||||| ||||||| |||   |||||||||||||||| ||| |  |||||| | |||||||    
T  17142677 aatgtaaatgcaaaagaataaaattttataagataaaacttgaggattagtaacaga-aaaagaaatgaaattgattagtcaaaaaatctcaacttagca 17142775  T
Q  209 gaaaataaaaaagcatgaaaataaatcaatgagttgcctcccattca 255  Q
    ||||||||||| |||  |||| ||||||||| ||| |||||||||||    
T  17142776 gaaaataaaaatgcagaaaaagaaatcaatgggttacctcccattca 17142822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 14 - 219
Target Start/End: Original strand, 16227263 - 16227467
Alignment:
Q  14 tgctcttgaatgtaagggtaaactagcctccaacgtaagtgctttgaaatgacttcctaagagtaaaataaa--attaagcataaaaggaaaggttgtaa 111  Q
    ||||||||||||||||||||||||||||| || ||||| ||| ||||||||||||||||||| |||||||||   | || |||||||||||||||||||     
T  16227263 tgctcttgaatgtaagggtaaactagccttcaccgtaaatgc-ttgaaatgacttcctaagactaaaataaatgttaaaacataaaaggaaaggttgtat 16227361  T
Q  112 atgtaaatgc-aaggaataaaactttataagataaacttgagggttagtaatagatttaagaaatgaaattgatcagttaggaaatcttagcttagcaga 210  Q
    || ||||||| || ||||     ||||||||||||   ||||| |||| || ||||||||| |||||||||||| ||| ||||||||| ||||||| |||    
T  16227362 atctaaatgcaaaagaat--ttttttataagataatactgaggattagcaacagatttaag-aatgaaattgattagtcaggaaatctcagcttagtaga 16227458  T
Q  211 aaataaaaa 219  Q
    |||||||||    
T  16227459 aaataaaaa 16227467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 117
Target Start/End: Original strand, 8766896 - 8767001
Alignment:
Q  12 tgtgctcttgaatgtaagggtaaactagcctccaacgtaagtgctttgaaatgacttcctaagagtaaaataaaattaagcataaaaggaaaggttgtaa 111  Q
    |||||||||||||||| || ||||||||||||   | ||| ||||||||||||| | ||||||| ||||||||| |||||||||||||||||||||| ||    
T  8766896 tgtgctcttgaatgtatggataaactagcctctgccttaaatgctttgaaatgaatacctaagactaaaataaatttaagcataaaaggaaaggttgaaa 8766995  T
Q  112 atgtaa 117  Q
    ||||||    
T  8766996 atgtaa 8767001  T

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Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 117
Target Start/End: Original strand, 8771779 - 8771884
Alignment:
Q  12 tgtgctcttgaatgtaagggtaaactagcctccaacgtaagtgctttgaaatgacttcctaagagtaaaataaaattaagcataaaaggaaaggttgtaa 111  Q
    |||||||||||||||| || ||||||||||||   | ||| ||||||||||||| | ||||||| ||||| ||| |||||||||||||||||||||||||    
T  8771779 tgtgctcttgaatgtatggataaactagcctctgccttaaatgctttgaaatgaatacctaagactaaaacaaatttaagcataaaaggaaaggttgtaa 8771878  T
Q  112 atgtaa 117  Q
    ||||||    
T  8771879 atgtaa 8771884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 34275284 - 34275236
Alignment:
Q  69 cctaagagtaaaataaaattaagcataaaaggaaaggttgtaaatgtaa 117  Q
    ||||||| ||||| ||| |||||||||||||||||||||||||||||||    
T  34275284 cctaagactaaaacaaatttaagcataaaaggaaaggttgtaaatgtaa 34275236  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 19166143 - 19166036
Alignment:
Q  16 ctcttgaatgtaagggtaaactagcctccaacgtaagtgctttgaaatgacttcctaagagtaaaataaaattaagcataaaaggaaaggttgtaaatgt 115  Q
    ||||||||||||| ||||||||||||| |  | ||| | || ||||| || | ||||||| ||| | ||| ||||||||||||||||||||  || ||||    
T  19166143 ctcttgaatgtaaaggtaaactagccttcgccttaaattctctgaaaggaatacctaagactaatacaaatttaagcataaaaggaaaggtcttatatgt 19166044  T
Q  116 aaatgcaa 123  Q
    ||||||||    
T  19166043 aaatgcaa 19166036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 113
Target Start/End: Complemental strand, 12770074 - 12769992
Alignment:
Q  31 gtaaactagcctccaacgtaagtgctttgaaatgacttcctaagagtaaaataaaattaagcataaaaggaaaggttgtaaat 113  Q
    |||||||||||||||  |||| |||||| |||||| | ||||||| ||||| ||| ||||||  |||||||||| ||||||||    
T  12770074 gtaaactagcctccactgtaaatgctttaaaatgaatacctaagactaaaacaaatttaagcgcaaaaggaaagattgtaaat 12769992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 117
Target Start/End: Original strand, 13586839 - 13586943
Alignment:
Q  12 tgtgctcttgaatgtaagggtaaactagcctccaacgtaagtgctttgaaatgacttcctaagagtaaaataaaattaagcataaaaggaaaggttgtaa 111  Q
    |||||||||||||||| || ||||||||||||   | | | ||||||||| ||| | ||||||| ||||| ||| |||||||||||| ||||| ||| ||    
T  13586839 tgtgctcttgaatgtatggataaactagcctctgcctttaatgctttgaa-tgaatacctaagactaaaacaaatttaagcataaaatgaaagattgcaa 13586937  T
Q  112 atgtaa 117  Q
    ||||||    
T  13586938 atgtaa 13586943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 8315927 - 8315732
Alignment:
Q  16 ctcttgaatgtaagggtaaactagcctccaacgtaagtgctttgaaatgacttcctaagagtaaaataaaattaagcataaaaggaaaggttgtaaatgt 115  Q
    ||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||        || | ||||||||||| |||||||||||||||    
T  8315927 ctcttgaatgtaagggtaaactagcctccactgtaaatgctttgaaatgacttcctaaga--------aattaaagcataaaagaaaaggttgtaaatgt 8315836  T
Q  116 aaatgcaag-gaataaaactttataagataa-acttgagggttagtaatagatttaagaaatgaaattgatcagttaggaaatcttagcttagcagaaaa 213  Q
    |||||||||  ||||||| |||||||||||| |||||||| | ||||| ||   ||||||||||||||||| ||||||||| | | || |||||||||||    
T  8315835 aaatgcaagataataaaattttataagataatacttgaggatcagtaacag-gataagaaatgaaattgattagttaggaagtttcagtttagcagaaaa 8315737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 255
Target Start/End: Original strand, 1586824 - 1586991
Alignment:
Q  89 aagcataaaaggaaaggttgtaaatgtaaatgcaag-gaataaaactttataagataaa-cttgagggttagtaatagatttaagaaatgaaattgatca 186  Q
    ||||||||| ||||| ||| |||||||||||||||| |||||| | ||||||||||||| ||||||  |||||||  ||   || ||||||||||||| |    
T  1586824 aagcataaacggaaatgttataaatgtaaatgcaagagaataatattttataagataaaacttgagtattagtaaccgaaa-aacaaatgaaattgatta 1586922  T
Q  187 gttaggaaatcttagcttagcagaaaataaaaaagcatgaaaataaatcaatgagttgcctcccattca 255  Q
    || || |||||| ||||||||| |||||||||| |||  ||| |||||||||| ||||| |||||||||    
T  1586923 gtcagaaaatctcagcttagcaaaaaataaaaatgcagaaaagtaaatcaatgggttgcttcccattca 1586991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 123
Target Start/End: Original strand, 19202699 - 19202808
Alignment:
Q  13 gtgctcttgaatgtaagggtaaactagcctccaacgtaagtgctttgaaatgacttcctaagagtaaaataaaattaagcataaaaggaaaggttgtaaa 112  Q
    |||||||||||||||||||||||||||| ||   |  || |||||| ||||||   ||||||| ||||| |||||||||||||||||||||| | ||| |    
T  19202699 gtgctcttgaatgtaagggtaaactagcatcagtctaaaatgcttt-aaatgaacacctaagactaaaaaaaaattaagcataaaaggaaagttcgtata 19202797  T
Q  113 tgtaaatgcaa 123  Q
    |||||||||||    
T  19202798 tgtaaatgcaa 19202808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 146
Target Start/End: Complemental strand, 19155315 - 19155227
Alignment:
Q  58 tgaaatgacttcctaagagtaaaataaaattaagcataaaaggaaaggttgtaaatgtaaatgcaaggaataaaactttataagataaa 146  Q
    ||||||||||  | |||| ||||| ||| | ||||||||||||||||||||| |||||||||||||  ||| ||| |||||||||||||    
T  19155315 tgaaatgactatccaagattaaaacaaagtaaagcataaaaggaaaggttgtcaatgtaaatgcaaataatcaaattttataagataaa 19155227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 146
Target Start/End: Complemental strand, 20754714 - 20754626
Alignment:
Q  58 tgaaatgacttcctaagagtaaaataaaattaagcataaaaggaaaggttgtaaatgtaaatgcaaggaataaaactttataagataaa 146  Q
    ||||||||||  | |||| ||||| ||| | ||||||||||||||||||||| |||||||||||||  ||| ||| |||||||||||||    
T  20754714 tgaaatgactatccaagattaaaacaaagtaaagcataaaaggaaaggttgtcaatgtaaatgcaaataatcaaattttataagataaa 20754626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 151
Target Start/End: Complemental strand, 13251539 - 13251456
Alignment:
Q  69 cctaagagtaaaataaaattaagcataaaaggaaaggttgtaaatgtaaatgca--aggaataaaactttataagataaacttga 151  Q
    ||||||| ||||| ||| |||||||||| ||||||  |||||||||| ||||||  || |||||| |||||| ||||||||||||    
T  13251539 cctaagactaaaacaaatttaagcataagaggaaaacttgtaaatgt-aatgcaagagaaataaatctttattagataaacttga 13251456  T

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Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 55 - 255
Target Start/End: Original strand, 22571055 - 22571257
Alignment:
Q  55 ctttgaaatgacttcctaagagtaaaataaaattaa-gcataaaaggaaaggttgtaaatgtaaatgcaaggaataaaactttataagataaa-cttgag 152  Q
    ||||||||||||||||||||| |||||| ||||||| ||||||||| ||| ||||||||| ||||||||| |||||||| |||||||||||||    |||    
T  22571055 ctttgaaatgacttcctaagactaaaatcaaattaaagcataaaagtaaaagttgtaaatataaatgcaatgaataaaattttataagataaataccgag 22571154  T
Q  153 ggttagtaatagatttaagaaatgaaattgatcagttaggaaatcttagcttagcagaaaataaaaaagcatgaaaataaatcaatgagttgcctcccat 252  Q
      |||| || | |||||||||||||||||||   |||||||||||| |||||||||||||||||||| |||  ||||||||  |||| ||||  ||||||    
T  22571155 tattagcaacatatttaagaaatgaaattgaattgttaggaaatctcagcttagcagaaaataaaaatgcagaaaaataaactaatgggttgaatcccat 22571254  T
Q  253 tca 255  Q
    |||    
T  22571255 tca 22571257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 15455569 - 15455672
Alignment:
Q  13 gtgctcttgaatgtaagggtaaactagcctccaacgtaagtgctttgaaatgacttcctaagagtaaaataaaatt-aagcataaaaggaaaggttgtaa 111  Q
    |||||||||||||||||||||||||||||||||  ||||   ||||||||| ||||  ||||| | ||| |||||| ||||||||||| |||||||||||    
T  15455569 gtgctcttgaatgtaagggtaaactagcctccactgtaaacactttgaaattactttttaagactcaaacaaaattaaagcataaaagaaaaggttgtaa 15455668  T
Q  112 atgt 115  Q
    ||||    
T  15455669 atgt 15455672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 117
Target Start/End: Complemental strand, 21844540 - 21844438
Alignment:
Q  12 tgtgctcttgaatgtaagggtaaactagcctccaacgtaagtgctttgaaatgacttcctaagagtaaaataaaattaagcataaaaggaaaggttgtaa 111  Q
    |||||||||||||||| |   ||||||||||  | | ||| ||||||||||||| |  |||||| ||||| ||| |||||||||||||||||||||||||    
T  21844540 tgtgctcttgaatgtatg---aaactagcctgtaccttaactgctttgaaatgaataactaagactaaaacaaatttaagcataaaaggaaaggttgtaa 21844444  T
Q  112 atgtaa 117  Q
    ||||||    
T  21844443 atgtaa 21844438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 122 - 255
Target Start/End: Original strand, 15455706 - 15455838
Alignment:
Q  122 aaggaataaaactttataagataaa-cttgagggttagtaatagatttaagaaatgaaattgatcagttaggaaatcttagcttagcagaaaataaaaaa 220  Q
    ||||||||||| ||||||| ||||| ||||||| ||||||| |||   |||||||||| || || ||| ||||||||| | |||||||||||| | |||     
T  15455706 aaggaataaaattttataacataaaacttgaggattagtaacagaaa-aagaaatgaagttaattagtcaggaaatctcaccttagcagaaaa-ataaat 15455803  T
Q  221 gcatgaaaataaatcaatgagttgcctcccattca 255  Q
    |||  |||||||||||||| ||||||| |||||||    
T  15455804 gcagaaaaataaatcaatgggttgccttccattca 15455838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 120
Target Start/End: Complemental strand, 14072365 - 14072314
Alignment:
Q  69 cctaagagtaaaataaaattaagcataaaaggaaaggttgtaaatgtaaatg 120  Q
    ||||||| ||||| ||| ||||||||||||| |||||||||| |||||||||    
T  14072365 cctaagaataaaacaaatttaagcataaaagaaaaggttgtatatgtaaatg 14072314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 117
Target Start/End: Complemental strand, 9870095 - 9869993
Alignment:
Q  15 gctcttgaatgtaagggtaaactagcctccaacgtaagtgctttgaaatgacttcctaagagtaaaataaaattaagcataaaaggaaaggttgtaaatg 114  Q
    ||||||||||||| || |||||||| |||   | ||| | ||||||||||| |  |||||| ||||| ||| ||||||||||||||||| |||| | |||    
T  9870095 gctcttgaatgtatggataaactagtctctgccttaaatactttgaaatgaatatctaagactaaaacaaatttaagcataaaaggaaaagttgaacatg 9869996  T
Q  115 taa 117  Q
    |||    
T  9869995 taa 9869993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 14 - 132
Target Start/End: Original strand, 31213740 - 31213857
Alignment:
Q  14 tgctcttgaatgtaagggtaaactagcctccaacgtaagtgctttgaaatgacttcctaagagtaaaataaaattaagcataaaaggaaaggttgtaaat 113  Q
    ||||||||| || ||||||||||||||||||| | ||| ||||||||||||||| ||||||| ||||  |||||||||||||||||||||||||||||||    
T  31213740 tgctcttgagtggaagggtaaactagcctccaccataaatgctttgaaatgactacctaagaataaac-aaaattaagcataaaaggaaaggttgtaaat 31213838  T
Q  114 gtaaatgcaaggaataaaa 132  Q
    ||||||| || ||||||||    
T  31213839 gtaaatgtaaagaataaaa 31213857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 31598933 - 31598727
Alignment:
Q  13 gtgctcttgaatgtaagggtaaactagcctccaacgtaagtgctttgaaatgacttcctaagagtaaaataaa--attaagcataaaaggaaaggttgta 110  Q
    |||||||| ||||||||||||||||||| |||| ||||| ||| ||||||||||||||||||| ||||| |||   | |||||||||| |||||||||||    
T  31598933 gtgctcttaaatgtaagggtaaactagcatccaccgtaaatgc-ttgaaatgacttcctaagactaaaacaaatgttaaagcataaaatgaaaggttgta 31598835  T
Q  111 aatgtaaatgc-aaggaataaaactttataagataaacttgagggttagtaatagatttaagaaatgaaattgatcagttaggaaatcttagcttagcag 209  Q
     |||||||||| || |||||||| ||||||||||||   ||||| |||  || | |||| || |||||||||||| ||| | ||||||| ||||||||||    
T  31598834 tatgtaaatgcaaaagaataaaattttataagataatactgaggattaaaaacatattttag-aatgaaattgattagtcaagaaatctcagcttagcag 31598736  T
Q  210 aaaataaaa 218  Q
    |||| ||||    
T  31598735 aaaagaaaa 31598727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 123
Target Start/End: Original strand, 19054353 - 19054462
Alignment:
Q  13 gtgctcttgaatgtaagggtaaactagcctccaacgtaagtgctttgaaatgacttcctaagagtaaaataaaattaagcataaaaggaaaggttgtaaa 112  Q
    ||||||||||||||||||||||||||||||||  |  || ||||||||| ||| | |||| || ||||| ||| ||||||||||||||||||||||||||    
T  19054353 gtgctcttgaatgtaagggtaaactagcctccgcctaaaatgctttgaa-tgaatacctacgactaaaacaaatttaagcataaaaggaaaggttgtaaa 19054451  T
Q  113 tgtaaatgcaa 123  Q
    | |||||||||    
T  19054452 tataaatgcaa 19054462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 117
Target Start/End: Complemental strand, 16783603 - 16783500
Alignment:
Q  13 gtgctcttgaatgtaagggtaaactagcctccaacgtaagtgctttgaaatgacttcctaagagtaaaataaaattaagcataaaaggaaaggttgtaaa 112  Q
    ||||||||||||||||||||||||||||||||  |  || ||||||||| ||| | ||||||| ||||| ||  ||||||||||||||||||||||||||    
T  16783603 gtgctcttgaatgtaagggtaaactagcctccgcctaaaatgctttgaa-tgaatacctaagactaaaacaatgttaagcataaaaggaaaggttgtaaa 16783505  T
Q  113 tgtaa 117  Q
    |||||    
T  16783504 tgtaa 16783500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 71 - 145
Target Start/End: Complemental strand, 25405209 - 25405133
Alignment:
Q  71 taagagtaaaataaaattaagcataaaaggaaaggttgtaaatgtaaatgc--aaggaataaaactttataagataa 145  Q
    ||||| ||||| ||| |||||||||||||||||||||||||||||||||||  ||| ||||||| ||||| ||||||    
T  25405209 taagactaaaacaaatttaagcataaaaggaaaggttgtaaatgtaaatgcaaaagaaataaaattttattagataa 25405133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 117
Target Start/End: Original strand, 9826511 - 9826613
Alignment:
Q  13 gtgctcttgaatgtaagggtaaactagcctccaacgtaagtgctttgaaatgacttcctaagagtaaaataaaattaagcataaaaggaaaggttgtaaa 112  Q
    ||||||||||||||||||||||||||||||||| |  || |||||| |||| | |  |||||| ||||||||| |||| |||||||  |||||||||| |    
T  9826511 gtgctcttgaatgtaagggtaaactagcctccacctaaaatgcttt-aaataaataactaagactaaaataaatttaaacataaaa-taaaggttgtata 9826608  T
Q  113 tgtaa 117  Q
    |||||    
T  9826609 tgtaa 9826613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 117
Target Start/End: Complemental strand, 24319389 - 24319286
Alignment:
Q  14 tgctcttgaatgtaagggtaaactagcctccaacgtaagtgctttgaaatgacttcctaagagtaaaataaaattaagcataaaaggaaaggttgtaaat 113  Q
    ||||||||| |||| || |||||||||||    | ||| ||||||||||| | | || |||| ||||| ||| ||||||||||||| |||||||||||||    
T  24319389 tgctcttgattgtatggataaactagcctatgccttaaatgctttgaaataaataccaaagactaaaacaaatttaagcataaaagaaaaggttgtaaat 24319290  T
Q  114 gtaa 117  Q
    ||||    
T  24319289 gtaa 24319286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 25405242 - 25405210
Alignment:
Q  13 gtgctcttgaatgtaagggtaaactagcctcca 45  Q
    ||||||||||||||| |||||||||||||||||    
T  25405242 gtgctcttgaatgtaggggtaaactagcctcca 25405210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0711 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0711
Description:

Target: scaffold0711; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 115 - 255
Target Start/End: Complemental strand, 6411 - 6272
Alignment:
Q  115 taaatgcaaggaataaaactttataagataaacttgagggttagtaatagatttaagaaatgaaattgatcagttaggaaatcttagcttagcagaaaat 214  Q
    |||| |||| |||||||| |||||||||||||||||| | || |||| |||||||||||||||||||||| | | ||||||||| ||||||| |||||||    
T  6411 taaacgcaaagaataaaattttataagataaacttgacgatttgtaacagatttaagaaatgaaattgattattcaggaaatctcagcttagtagaaaat 6312  T
Q  215 aaaaaagcatgaaaataaatcaatgagttgcctcccattca 255  Q
    | ||||| | |||||||||| |||| |||||||||||||||    
T  6311 a-aaaagtaggaaaataaattaatgggttgcctcccattca 6272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 12 - 123
Target Start/End: Original strand, 25231899 - 25232009
Alignment:
Q  12 tgtgctcttgaatgtaagggtaaactagcctccaacgtaagtgctttgaaatgacttcctaagagtaaaataaaattaagcataaaaggaaaggttgtaa 111  Q
    ||||||||||||| |||||||||||||||||||  |  || ||||||||| ||| | ||||||| ||||| ||| ||||||||||||||||| |||||||    
T  25231899 tgtgctcttgaatataagggtaaactagcctccgcctaaaatgctttgaa-tgaatacctaagactaaaacaaatttaagcataaaaggaaatgttgtaa 25231997  T
Q  112 atgtaaatgcaa 123  Q
     |||||||||||    
T  25231998 ttgtaaatgcaa 25232009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 117
Target Start/End: Complemental strand, 24721164 - 24721059
Alignment:
Q  11 ctgtgctcttgaatgtaagggtaaactagcctccaacgtaagtgctttgaaatgacttcctaagagtaaaataaaattaagcataaaaggaaaggttgta 110  Q
    ||||||||||||||||| || ||||||||| |    | ||| ||||||||| ||| | ||||||| ||||||||| |||||||||||||| |||||||||    
T  24721164 ctgtgctcttgaatgtatggataaactagcttatgccttaaatgctttgaa-tgaatacctaagactaaaataaatttaagcataaaagggaaggttgta 24721066  T
Q  111 aatgtaa 117  Q
    |||||||    
T  24721065 aatgtaa 24721059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 28857819 - 28857920
Alignment:
Q  15 gctcttgaatgtaagggtaaactagcctccaacgtaagtgctttgaaatgacttcctaagagtaaaataaaattaagcataaaaggaaaggttgtaaatg 114  Q
    |||||||||||||||||||||||||| |||| | ||| || | |||||| |||  |||||| |||||  |||||||||||||| ||||||||  ||||||    
T  28857819 gctcttgaatgtaagggtaaactagcttccaccataaatgttatgaaataactctctaagactaaaa-caaattaagcataaatggaaaggtaataaatg 28857917  T
Q  115 taa 117  Q
    |||    
T  28857918 taa 28857920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 117
Target Start/End: Complemental strand, 26828524 - 26828484
Alignment:
Q  77 taaaataaaattaagcataaaaggaaaggttgtaaatgtaa 117  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  26828524 taaaataaatttaagcataaaaggaaaggttgtaaatgtaa 26828484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 145
Target Start/End: Original strand, 17964370 - 17964501
Alignment:
Q  14 tgctcttgaatgtaagggtaaact-agcctccaacgtaagtgctttgaaatgacttcctaagagtaaaataaaattaagcataaaaggaaaggttgtaaa 112  Q
    ||||||||||||||| |||||||| || |||| | ||||||| | |||||| |||  |||||| ||||| ||| ||||||||||| ||||||||| || |    
T  17964370 tgctcttgaatgtaacggtaaacttagactcccatgtaagtgttctgaaataactctctaagactaaaacaaa-ttaagcataaatggaaaggttatata 17964468  T
Q  113 tgtaaatgc-aaggaataaaactttataagataa 145  Q
    ||| ||||| ||| ||||||| |||||| |||||    
T  17964469 tgt-aatgcaaagaaataaaattttatatgataa 17964501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 21320788 - 21320820
Alignment:
Q  13 gtgctcttgaatgtaagggtaaactagcctcca 45  Q
    ||||||||||||||| |||||||||||||||||    
T  21320788 gtgctcttgaatgtaggggtaaactagcctcca 21320820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 123
Target Start/End: Complemental strand, 13130714 - 13130605
Alignment:
Q  14 tgctcttgaatgtaagggtaaactagcctccaacgtaagtgctttgaaatgacttcctaagagtaaaataaaattaagcataaaaggaaaggttgtaaat 113  Q
    ||||||||||||||||| ||||| |||||||   |||| | ||||||||||| | | ||||| ||||| ||| |||||||||||||| ||||||||| ||    
T  13130714 tgctcttgaatgtaaggataaaccagcctccgctgtaaattctttgaaatgaatacttaagactaaaacaaatttaagcataaaagggaaggttgtacat 13130615  T
Q  114 gtaaatgcaa 123  Q
    ||||||||||    
T  13130614 gtaaatgcaa 13130605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 12609163 - 12609257
Alignment:
Q  13 gtgctcttgaatgtaagggtaaactagcctccaacgtaagtgctttgaaatgacttcctaagagtaaaataaaattaagcataaaaggaaaggtt 107  Q
    ||||||||||||||||||||||||||||||||  |  ||| |||||||||||| | |||| || ||||| ||| ||||  |||||||||||||||    
T  12609163 gtgctcttgaatgtaagggtaaactagcctccgccaaaagcgctttgaaatgaatacctatgactaaaacaaatttaaatataaaaggaaaggtt 12609257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 12402856 - 12402808
Alignment:
Q  69 cctaagagtaaaataaaattaagcataaaaggaaaggttgtaaatgtaa 117  Q
    ||||||| ||||| ||| ||||| |||||||||||||||||||||||||    
T  12402856 cctaagactaaaacaaatttaagaataaaaggaaaggttgtaaatgtaa 12402808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 117
Target Start/End: Original strand, 25097650 - 25097690
Alignment:
Q  77 taaaataaaattaagcataaaaggaaaggttgtaaatgtaa 117  Q
    ||||||||| |||||||||||||||||||| ||||||||||    
T  25097650 taaaataaatttaagcataaaaggaaaggtcgtaaatgtaa 25097690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 58 - 146
Target Start/End: Original strand, 22790249 - 22790337
Alignment:
Q  58 tgaaatgacttcctaagagtaaaataaaattaagcataaaaggaaaggttgtaaatgtaaatgcaaggaataaaactttataagataaa 146  Q
    ||||||||||   ||||| ||||||||| | ||||||||||||||||||||||||||||| |||||  ||||||| |||||||||||||    
T  22790249 tgaaatgactatttaagactaaaataaattaaagcataaaaggaaaggttgtaaatgtaagtgcaaataataaaattttataagataaa 22790337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 123
Target Start/End: Original strand, 18828607 - 18828717
Alignment:
Q  12 tgtgctcttgaatgtaagggtaaactagcctccaacgtaag-tgctttgaaatgacttcctaagagtaaaataaaattaagcataaaaggaaaggttgta 110  Q
    |||||||||||||||||| ||||||||| ||||  |||||  ||||||||| ||| | || |||| ||||| ||| ||||||||||||||| ||||||||    
T  18828607 tgtgctcttgaatgtaagagtaaactaggctccc-cgtaaaatgctttgaa-tgaatacccaagactaaaacaaatttaagcataaaaggagaggttgta 18828704  T
Q  111 aatgtaaatgcaa 123  Q
    |||||||||||||    
T  18828705 aatgtaaatgcaa 18828717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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