View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12174_low_26 (Length: 242)
Name: NF12174_low_26
Description: NF12174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12174_low_26 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 13 - 225
Target Start/End: Complemental strand, 18152818 - 18152606
Alignment:
| Q |
13 |
aacctgtggatgctccagaatcttttcgattgctcgttcgagaactacgatctttggctctggaactgaatcatttccttgtatctgagaaagacttcca |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18152818 |
aacctgtggatgctccagaatcttttcgattgctcgttcgagaactacgatctttggctctggaactgaatcatttccttgtatctgagaaagacttcca |
18152719 |
T |
|
| Q |
113 |
gattcaaaggaaggaagtttaattggactgaatcagaaattttattctatgattgatcagtataaacatcaacaccttcgaattggatcagtttctcctg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18152718 |
gattcaaaggaaggaagtttaattggactgaatcagaaattttattctatgattgatcagtataaacatcaacaccttcgaattggatcagtttctcctg |
18152619 |
T |
|
| Q |
213 |
aacaaataagtgc |
225 |
Q |
| |
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||||||||||||| |
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| T |
18152618 |
aacaaataagtgc |
18152606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 32 - 225
Target Start/End: Original strand, 1785937 - 1786130
Alignment:
| Q |
32 |
atcttttcgattgctcgttcgagaactacgatctttggctctggaactgaatcatttccttgtatctgagaaagacttccagattcaaaggaaggaagtt |
131 |
Q |
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||||||| ||||| |||||||||||||||||||||| ||| ||||| ||||||||||||| ||| ||||||||||||||||||||||| || |||||| |
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| T |
1785937 |
atctttttgattgttcgttcgagaactacgatctttagctttggaatggaatcatttccttatatatgagaaagacttccagattcaaaataatgaagtt |
1786036 |
T |
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| Q |
132 |
taattggactgaatcagaaattttattctatgattgatcagtataaacatcaacaccttcgaattggatcagtttctcctgaacaaataagtgc |
225 |
Q |
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| T |
1786037 |
taattggacttaatcataagttttattctatgactgatcagtataaacatcaacaccttcgaattggatcaatttttcctagacaattaagtgc |
1786130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 51 - 225
Target Start/End: Original strand, 28371607 - 28371781
Alignment:
| Q |
51 |
cgagaactacgatctttggctctggaactgaatcatttccttgtatctgagaaagacttccagattcaaaggaaggaagtttaattggactgaatcagaa |
150 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28371607 |
cgagaactacgatctttggctctggaactgaatcatttccttgtatctgagaaagacttccagattcaaaggaaggaagtttaattggactgaatcagaa |
28371706 |
T |
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| Q |
151 |
attttattctatgattgatcagtataaacatcaacaccttcgaattggatcagtttctcctgaacaaataagtgc |
225 |
Q |
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| T |
28371707 |
attttattctatgattgatcagtataaacatcaacaccttcgaattggatcagtttctcctgaacaaataagtgc |
28371781 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 51 - 225
Target Start/End: Original strand, 28379429 - 28379603
Alignment:
| Q |
51 |
cgagaactacgatctttggctctggaactgaatcatttccttgtatctgagaaagacttccagattcaaaggaaggaagtttaattggactgaatcagaa |
150 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28379429 |
cgagaactacgatctttggctctggaactgaatcatttccttgtatctgagaaagacttccagattcaaaggaaggaagtttaattggactgaatcagaa |
28379528 |
T |
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| Q |
151 |
attttattctatgattgatcagtataaacatcaacaccttcgaattggatcagtttctcctgaacaaataagtgc |
225 |
Q |
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| T |
28379529 |
attttattctatgattgatcagtataaacatcaacaccttcgaattggatcagtttctcctgaacaaataagtgc |
28379603 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 17 - 224
Target Start/End: Complemental strand, 23937097 - 23936897
Alignment:
| Q |
17 |
tgtggatgctccagaatcttttcgattgctcgttcgagaactacgatctttggctctggaactgaatcatttccttgtatctgagaaagacttccagatt |
116 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
23937097 |
tgtggatgctccagaatctttttgattgctcgttcgagaactacaatctttg-------aactgaatcatttccttgtatctgagaaagacttccaaatt |
23937005 |
T |
|
| Q |
117 |
caaaggaaggaagtttaattggactgaatcagaaattttattctatgattgatcagtataaacatcaacaccttcgaattggatcagtttctcctgaaca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| | |
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| T |
23937004 |
caaaggaaggaagtttaattggactgaatcagaaattttattctatgattgatcagtataaagatcaacaccttcgagttggatcaatttctcctgaata |
23936905 |
T |
|
| Q |
217 |
aataagtg |
224 |
Q |
| |
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|||||||| |
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| T |
23936904 |
aataagtg |
23936897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 17 - 153
Target Start/End: Complemental strand, 18637965 - 18637829
Alignment:
| Q |
17 |
tgtggatgctccagaatcttttcgattgctcgttcgagaactacgatctttggctctggaactgaatcatttccttgtatctgagaaagacttccagatt |
116 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| | |||||||| || ||||||||| | ||||||||||||||||||| |||||||||||| |||||| |
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| T |
18637965 |
tgtggatgctccataatcttttcgattgctcgtgcaagaactacaatatttggctcttaagctgaatcatttccttgtatatgagaaagactttcagatt |
18637866 |
T |
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| Q |
117 |
caaaggaaggaagtttaattggactgaatcagaaatt |
153 |
Q |
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|||||||||||| |||||||||||||||||||||||| |
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| T |
18637865 |
caaaggaaggaaatttaattggactgaatcagaaatt |
18637829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 17 - 153
Target Start/End: Complemental strand, 18651399 - 18651263
Alignment:
| Q |
17 |
tgtggatgctccagaatcttttcgattgctcgttcgagaactacgatctttggctctggaactgaatcatttccttgtatctgagaaagacttccagatt |
116 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| | |||||||| || ||||||||| | ||||||||||||||||||| |||||||||||| |||||| |
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| T |
18651399 |
tgtggatgctccataatcttttcgattgctcgtgcaagaactacaatatttggctcttaagctgaatcatttccttgtatatgagaaagactttcagatt |
18651300 |
T |
|
| Q |
117 |
caaaggaaggaagtttaattggactgaatcagaaatt |
153 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |
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| T |
18651299 |
caaaggaaggaaatttaattggactgaatcagaaatt |
18651263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 18605050 - 18605115
Alignment:
| Q |
17 |
tgtggatgctccagaatcttttcgattgctcgttcgagaactacgatctttggctctggaactgaa |
82 |
Q |
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|
||||||||||||| ||||||||||||||||||| | |||||||| || | ||||||| || ||||| |
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| T |
18605050 |
tgtggatgctccataatcttttcgattgctcgtgcaagaactacaatatatggctcttgagctgaa |
18605115 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 18605124 - 18605161
Alignment:
| Q |
116 |
tcaaaggaaggaagtttaattggactgaatcagaaatt |
153 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||| |
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| T |
18605124 |
tcaaaggaaggaaatttaattggactgaatcataaatt |
18605161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 17 - 153
Target Start/End: Original strand, 38578397 - 38578533
Alignment:
| Q |
17 |
tgtggatgctccagaatcttttcgattgctcgttcgagaactacgatctttggctctggaactgaatcatttccttgtatctgagaaagacttccagatt |
116 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| | |||||||| || ||||||||| || |||||||||||||||||| |||||||||||| |||||| |
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|
| T |
38578397 |
tgtggatgctccataatcttttcgattgctcgtgcaagaactacaatatttggctcttgaggtgaatcatttccttgtatatgagaaagactttcagatt |
38578496 |
T |
|
| Q |
117 |
caaaggaaggaagtttaattggactgaatcagaaatt |
153 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
38578497 |
caaaggaatgaagtttaattgtactgaatcagaaatt |
38578533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 132
Target Start/End: Original strand, 222897 - 223009
Alignment:
| Q |
20 |
ggatgctccagaatcttttcgattgctcgttcgagaactacgatctttggctctggaactgaatcatttccttgtatctgagaaagacttccagattcaa |
119 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| || | |
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| T |
222897 |
ggatcctccagaatcttttcgagtgctcgttcgagaactacgatctttggctctagaactgaatcatttccttgtatctgaaaagaacttccaggttaat |
222996 |
T |
|
| Q |
120 |
aggaaggaagttt |
132 |
Q |
| |
|
||| ||||||||| |
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|
| T |
222997 |
agggaggaagttt |
223009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 142
Target Start/End: Complemental strand, 6532359 - 6532280
Alignment:
| Q |
63 |
tctttggctctggaactgaatcatttccttgtatctgagaaagacttccagattcaaaggaaggaagtttaattggactg |
142 |
Q |
| |
|
||||||||||| |||| |||| ||||||| |||||||| |||| |||||||||||||| || |||||| |||||||| |
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|
| T |
6532359 |
tctttggctcttgaacggaattgtttccttatatctgaggaagatttccagattcaaagaaaatgagtttatttggactg |
6532280 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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