View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12174_low_28 (Length: 241)
Name: NF12174_low_28
Description: NF12174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12174_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 2794202 - 2794424
Alignment:
| Q |
1 |
atctcgtaaaaaagacactaannnnnnngaataaaaggattctaaataggtatggaaggaagggtatcattacatctaatagttatatgcagttcataga |
100 |
Q |
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| T |
2794202 |
atctcgtaaaaaagacactaatttttttgaataaaagaattctaaataggaatggaaggaagggtatcattacatctaatagttatatgcagttcataga |
2794301 |
T |
|
| Q |
101 |
ctgaattgaacagataaattggttgaattgtgaactaacactgccagcattcagttatttgtgcaattcggtcgaaatttcattgcgtccgaacagttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2794302 |
ctgaattgaacagataaattggttgaattgtgaactaacactgccagcattcagttttttgtgcaattcggtcgaaatttcattgcgtccgaacagttaa |
2794401 |
T |
|
| Q |
201 |
aaatagttgaactatggcctcag |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
2794402 |
aaatagttgaactatggcctcag |
2794424 |
T |
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