View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12174_low_29 (Length: 241)
Name: NF12174_low_29
Description: NF12174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12174_low_29 |
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| [»] chr2 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 22827997 - 22828217
Alignment:
| Q |
19 |
gcaaacacttacaacatttcttggcaattcatgtggcacaaaggggtactaatttctctaattcataaactagcatgatcaatgattctcacatggacac |
118 |
Q |
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| T |
22827997 |
gcaaacacttacaacatttcttggcaattcatg--gcacaaaggggtactaatttctctaattcataaactagcatgatcaatgattctcacatggacac |
22828094 |
T |
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| Q |
119 |
acacacaaacccaaggtaggaaaactatttaaagaactcacatgtatttactgagatttgcttcaagcttctaagcttctacaccaaaccctagcccata |
218 |
Q |
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| T |
22828095 |
acacacaaacccaaggtaggaaaactatttaaagaactcacatgtatttactgagatttgcttcaagcttctaagcttctacaccaaaccctagcccata |
22828194 |
T |
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| Q |
219 |
gcttatcaccaacaactcgattc |
241 |
Q |
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| T |
22828195 |
gcttatcaccaacaactcgattc |
22828217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 19 - 233
Target Start/End: Complemental strand, 23307835 - 23307624
Alignment:
| Q |
19 |
gcaaacacttacaacatttcttggcaattcatgtggcacaaaggggtactaatttctctaattcataaactagcatgatcaatgattctcacatggacac |
118 |
Q |
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| T |
23307835 |
gcaaacactaacaacatttcttggcaattcatg--gcacaaaggggtactaatttctctaattcataaactagcatgatca-tgattctcacatggacac |
23307739 |
T |
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| Q |
119 |
acacacaaacccaaggtaggaaaactatttaaagaactcacatgtatttactgagatttgcttcaagcttctaagcttctacaccaaaccctagcccata |
218 |
Q |
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| T |
23307738 |
acgcacgaacccaaggtaggaaaactatctaaagaactcacatgtatttactgagatttgcttcaagctcctaagcttctacaccaaaccctagcccata |
23307639 |
T |
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| Q |
219 |
gcttatcaccaacaa |
233 |
Q |
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| T |
23307638 |
gcttatcaccaacaa |
23307624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 24089740 - 24089701
Alignment:
| Q |
119 |
acacacaaacccaaggtaggaaaactatttaaagaactcac |
159 |
Q |
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| T |
24089740 |
acacacaaacccaaggt-ggaaaactatctaaagaactcac |
24089701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 150 - 241
Target Start/End: Complemental strand, 380381 - 380290
Alignment:
| Q |
150 |
aagaactcacatgtatttactgagatttgcttcaagcttctaagcttctacaccaaaccctagcccatagcttatcaccaacaactcgattc |
241 |
Q |
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| T |
380381 |
aagaactcacatgtatttactgagatttgcttcaagctcctaagcttctacaccaaaccctagcccatagcttatcacaaacaactcgattc |
380290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 152 - 241
Target Start/End: Complemental strand, 3556036 - 3555947
Alignment:
| Q |
152 |
gaactcacatgtatttactgagatttgcttcaagcttctaagcttctacaccaaaccctagcccatagcttatcaccaacaactcgattc |
241 |
Q |
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| T |
3556036 |
gaactcacgtgtatttactgagatttgcttcaagctcctaagcttctacaccaaaccctaccccatagcttatcaccaacaactcgattc |
3555947 |
T |
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