View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12174_low_31 (Length: 240)
Name: NF12174_low_31
Description: NF12174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12174_low_31 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 16817804 - 16817624
Alignment:
| Q |
18 |
gtactcctatgttgatccaagtgaaataaagatggtagagtatcatgttggtgaagttgaatctgatgaagataaaccaacaacaaaaagacgcaggaac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16817804 |
gtactcctatgttgatccaagtgaaataaagatggtagagtatcatgttggtgaagttgaatctgatgaagataaaccaacaacaaaaagacgcaggaac |
16817705 |
T |
|
| Q |
118 |
ggcgcatagacatatctatcaagctagagacgtaaaacacacgctaaataggaggtagcctatttcatcaagctaatgact |
198 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16817704 |
ggtgcatagacatatctatcaagctagagacgtaaagcacacgctaaataggaggtagcctatttcatcaagctaatgact |
16817624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 16856961 - 16856781
Alignment:
| Q |
18 |
gtactcctatgttgatccaagtgaaataaagatggtagagtatcatgttggtgaagttgaatctgatgaagataaaccaacaacaaaaagacgcaggaac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16856961 |
gtactcctatgttgatccaagtgaaataaagatggtagagtatcatgttggtgaagttgaatctgatgaagataaaccaacaacaaaaagacgcaggaac |
16856862 |
T |
|
| Q |
118 |
ggcgcatagacatatctatcaagctagagacgtaaaacacacgctaaataggaggtagcctatttcatcaagctaatgact |
198 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16856861 |
ggtgcatagacatatctatcaagctagagacgtaaagcacacgctaaataggaggtagcctatttcatcaagctaatgact |
16856781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 16816275 - 16816235
Alignment:
| Q |
200 |
aagaatcattgagcaggagaaaacctattgatcatcgggac |
240 |
Q |
| |
|
|||||||| ||| |||||| ||||||||||||||||||||| |
|
|
| T |
16816275 |
aagaatcactgaacaggaggaaacctattgatcatcgggac |
16816235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 16855432 - 16855392
Alignment:
| Q |
200 |
aagaatcattgagcaggagaaaacctattgatcatcgggac |
240 |
Q |
| |
|
|||||||| ||| |||||| ||||||||||||||||||||| |
|
|
| T |
16855432 |
aagaatcactgaacaggaggaaacctattgatcatcgggac |
16855392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 8315451 - 8315631
Alignment:
| Q |
18 |
gtactcctatgttgatccaagtgaaataaagatggtagagtatcatgttggtgaagttgaatctgatgaagataaaccaacaacaaaaagacgcaggaac |
117 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||| | ||||||||||||||||| ||| ||| |||||||||| | |
|
|
| T |
8315451 |
gtactcttatgttgatccaagtgagataaatatggtagagtatcatgttggtgaaggcgggtctgatgaagataaacctacacaaaatagacgcaggagc |
8315550 |
T |
|
| Q |
118 |
ggcgcatagacatatctatcaagctagagacgtaaaacacacgctaaataggaggtagcctatttcatcaagctaatgact |
198 |
Q |
| |
|
| ||||||||||||| ||| || ||||||||||||| ||||||||||||| | |||||||| | |||||||||||| |
|
|
| T |
8315551 |
agtgcatagacatatccgtcagactttagacgtaaaacacgggctaaataggaggcaacctatttctttaagctaatgact |
8315631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 24319008 - 24319080
Alignment:
| Q |
124 |
tagacatatctatcaagctagagacgtaaaacacacgctaaataggaggtagcctatttcatcaagctaatga |
196 |
Q |
| |
|
||||||||||| ||| ||| | |||| |||||| |||| ||||||||| | |||||||| |||||||||||| |
|
|
| T |
24319008 |
tagacatatctgtcaggctcgggacgctaaacacgcgctgaataggaggcaacctatttcgtcaagctaatga |
24319080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University