View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12174_low_32 (Length: 238)
Name: NF12174_low_32
Description: NF12174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12174_low_32 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 55708640 - 55708416
Alignment:
| Q |
21 |
ttagacaacacaagttccaagaagttcaaaattaacagttcgaaactcactttaaatgggttttcaacggttgaggaaaaacctgagacgtttttaggca |
120 |
Q |
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| T |
55708640 |
ttagacaacacaagttccaagaagttcaaaattaacagttcgaaactcactttaaatgggttttcaacagttgaggaaaaacctgagacgtttttaggca |
55708541 |
T |
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| Q |
121 |
gtaacttcttttctagagcacgagtcaattctga-------aatatatcagcttcttttgaatggactcatccaagaaagaaagattgagaacttgatgc |
213 |
Q |
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| T |
55708540 |
gtaacttcttttctagagcacgagtcaattctgaaatagttaatatatcagcttcttttgaatggactcatccaagaaagaaagattgagaacttgatgc |
55708441 |
T |
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| Q |
214 |
tgatttgccattacaaatatcacta |
238 |
Q |
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| T |
55708440 |
tgatttgccattacaaatatcacta |
55708416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 120 - 237
Target Start/End: Complemental strand, 49444261 - 49444137
Alignment:
| Q |
120 |
agtaacttcttttctagagcacgagtcaattctgaaata-------tatcagcttcttttgaatggactcatccaagaaagaaagattgagaacttgatg |
212 |
Q |
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| T |
49444261 |
agtaccttcttttctagagcacgagtcaattctgaaatagctaatatatcagcttcttttgattggagttgttcaagaaaggaagaatgagaacttgatg |
49444162 |
T |
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| Q |
213 |
ctgatttgccattacaaatatcact |
237 |
Q |
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| T |
49444161 |
ctgattggccattacagatctcact |
49444137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 94
Target Start/End: Complemental strand, 49444401 - 49444329
Alignment:
| Q |
24 |
gacaacacaagttccaagaagttcaaaattaacagttcgaaactcacttt---aaatgggttttcaacggttga |
94 |
Q |
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| T |
49444401 |
gacaacacaagttcctagaagttcaaaattaacagctc-aaactcactttcgaaaatgggttttcaacagttga |
49444329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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