View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12174_low_36 (Length: 222)

Name: NF12174_low_36
Description: NF12174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12174_low_36
NF12174_low_36
[»] chr1 (13 HSPs)
chr1 (1-206)||(5100146-5100351)
chr1 (132-206)||(16648603-16648675)
chr1 (132-188)||(10136375-10136432)
chr1 (134-188)||(26926718-26926773)
chr1 (132-188)||(25844806-25844863)
chr1 (132-188)||(38622239-38622296)
chr1 (132-207)||(8138642-8138715)
chr1 (132-172)||(51040527-51040567)
chr1 (132-187)||(16036656-16036712)
chr1 (132-187)||(23191829-23191885)
chr1 (132-169)||(46697363-46697400)
chr1 (132-172)||(19798000-19798039)
chr1 (132-187)||(40166990-40167046)
[»] chr5 (22 HSPs)
chr5 (132-206)||(10759333-10759407)
chr5 (132-206)||(40150245-40150320)
chr5 (132-188)||(29166962-29167019)
chr5 (132-206)||(23757135-23757210)
chr5 (132-206)||(23822591-23822666)
chr5 (132-188)||(37646044-37646101)
chr5 (132-207)||(36424688-36424764)
chr5 (132-188)||(7452805-7452862)
chr5 (132-188)||(26668328-26668385)
chr5 (132-188)||(26939925-26939982)
chr5 (132-188)||(37247788-37247845)
chr5 (132-184)||(37536930-37536983)
chr5 (135-188)||(20180144-20180198)
chr5 (132-188)||(6154421-6154478)
chr5 (132-188)||(39519435-39519492)
chr5 (132-187)||(35678888-35678944)
chr5 (132-188)||(39524074-39524131)
chr5 (132-187)||(4872932-4872988)
chr5 (132-187)||(9725763-9725819)
chr5 (142-206)||(12104105-12104170)
chr5 (127-167)||(6511614-6511654)
chr5 (132-187)||(22832496-22832552)
[»] chr8 (12 HSPs)
chr8 (132-206)||(1808500-1808575)
chr8 (132-204)||(1909920-1909993)
chr8 (132-206)||(44924892-44924967)
chr8 (132-188)||(38181271-38181328)
chr8 (132-188)||(40124883-40124940)
chr8 (132-172)||(17021305-17021345)
chr8 (132-172)||(17551742-17551782)
chr8 (132-183)||(26780153-26780205)
chr8 (132-168)||(15950582-15950618)
chr8 (132-205)||(18875357-18875431)
chr8 (132-188)||(7002695-7002752)
chr8 (132-188)||(28564287-28564343)
[»] chr4 (25 HSPs)
chr4 (132-206)||(16422096-16422171)
chr4 (132-206)||(12822881-12822956)
chr4 (132-188)||(5270412-5270469)
chr4 (132-188)||(8694763-8694820)
chr4 (132-188)||(55252695-55252752)
chr4 (132-206)||(13060517-13060592)
chr4 (132-188)||(5925793-5925850)
chr4 (132-188)||(31274564-31274621)
chr4 (132-188)||(31728355-31728412)
chr4 (132-188)||(37263552-37263609)
chr4 (140-206)||(6943820-6943887)
chr4 (132-206)||(33467974-33468049)
chr4 (132-204)||(51698979-51699052)
chr4 (132-172)||(27183275-27183315)
chr4 (132-206)||(19907338-19907413)
chr4 (132-205)||(32081139-32081211)
chr4 (132-188)||(2820842-2820898)
chr4 (132-187)||(8028148-8028201)
chr4 (132-186)||(29349198-29349252)
chr4 (132-188)||(37258854-37258909)
chr4 (132-184)||(8029328-8029381)
chr4 (132-184)||(12875454-12875507)
chr4 (132-187)||(19103016-19103072)
chr4 (129-187)||(19107625-19107685)
chr4 (132-187)||(48275829-48275885)
[»] chr7 (15 HSPs)
chr7 (132-206)||(12802332-12802407)
chr7 (132-200)||(42625555-42625624)
chr7 (132-188)||(4931273-4931330)
chr7 (132-206)||(21672254-21672329)
chr7 (132-180)||(23151683-23151732)
chr7 (132-188)||(44508285-44508342)
chr7 (127-206)||(3046618-3046698)
chr7 (132-183)||(10392081-10392133)
chr7 (132-187)||(12257071-12257127)
chr7 (132-182)||(23247554-23247605)
chr7 (132-188)||(2595820-2595877)
chr7 (132-188)||(3881021-3881078)
chr7 (134-171)||(8269360-8269397)
chr7 (132-184)||(26342255-26342308)
chr7 (132-187)||(26286146-26286202)
[»] scaffold0352 (1 HSPs)
scaffold0352 (132-188)||(8159-8216)
[»] chr6 (14 HSPs)
chr6 (132-188)||(20747286-20747343)
chr6 (132-208)||(33686613-33686690)
chr6 (132-206)||(22694356-22694431)
chr6 (138-204)||(2699087-2699154)
chr6 (132-206)||(11533673-11533748)
chr6 (132-206)||(11559183-11559258)
chr6 (132-194)||(11569675-11569738)
chr6 (132-188)||(17600427-17600484)
chr6 (132-188)||(6406849-6406906)
chr6 (132-188)||(11429007-11429064)
chr6 (132-188)||(17963547-17963604)
chr6 (132-187)||(12797772-12797828)
chr6 (132-188)||(16835150-16835207)
chr6 (132-188)||(12405349-12405406)
[»] chr3 (19 HSPs)
chr3 (132-199)||(46965062-46965130)
chr3 (132-206)||(20175440-20175515)
chr3 (132-206)||(20521011-20521086)
chr3 (132-188)||(757353-757410)
chr3 (132-188)||(18473056-18473113)
chr3 (132-185)||(12970800-12970854)
chr3 (132-188)||(7570204-7570261)
chr3 (132-188)||(18468262-18468319)
chr3 (132-188)||(23660478-23660535)
chr3 (132-188)||(23665110-23665167)
chr3 (132-187)||(3656247-3656303)
chr3 (137-188)||(32473133-32473185)
chr3 (132-188)||(55326827-55326883)
chr3 (137-206)||(3426125-3426195)
chr3 (132-181)||(12964879-12964929)
chr3 (132-188)||(27709978-27710035)
chr3 (132-187)||(38891166-38891222)
chr3 (132-187)||(55432275-55432330)
chr3 (132-188)||(14437682-14437736)
[»] chr2 (19 HSPs)
chr2 (132-199)||(12361295-12361363)
chr2 (132-206)||(20101621-20101696)
chr2 (132-206)||(25496355-25496430)
chr2 (132-188)||(9179715-9179772)
chr2 (132-206)||(12797980-12798055)
chr2 (132-206)||(25477260-25477335)
chr2 (132-188)||(1933998-1934055)
chr2 (132-188)||(17967953-17968010)
chr2 (132-188)||(17974340-17974397)
chr2 (132-188)||(18345466-18345523)
chr2 (132-188)||(30651964-30652021)
chr2 (132-188)||(9184406-9184463)
chr2 (132-188)||(19891496-19891553)
chr2 (132-187)||(42925666-42925722)
chr2 (132-186)||(19896998-19897053)
chr2 (132-206)||(29678728-29678803)
chr2 (132-187)||(28604135-28604191)
chr2 (132-187)||(31329112-31329168)
chr2 (132-187)||(31335833-31335889)
[»] scaffold0002 (2 HSPs)
scaffold0002 (132-206)||(442911-442986)
scaffold0002 (132-188)||(5114-5171)
[»] scaffold0054 (1 HSPs)
scaffold0054 (132-188)||(30227-30284)
[»] scaffold0240 (1 HSPs)
scaffold0240 (132-206)||(5019-5094)
[»] scaffold0011 (1 HSPs)
scaffold0011 (132-187)||(64885-64940)
[»] scaffold0057 (1 HSPs)
scaffold0057 (132-206)||(36171-36246)
[»] scaffold0690 (1 HSPs)
scaffold0690 (132-180)||(6282-6331)


Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 5100351 - 5100146
Alignment:
Q  1 aatgttgaaataaataaataaagttgcaggaataaaacatttcatataggaggcttaatacctgctactcacaataagattaaaagttaatttagattct 100  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  5100351 aatggtgaaataaataaataaagttgcaggaaaaaaacatttcatataggaggcttaatacttgctcctcacaataagattaaaagttaatttagattct 5100252  T
Q  101 aaaatcaaattaaagcagatattgaataatattttcaattcacacaacattaaatcaaagtataattacttgtgtttaatcttccaatgtattttccaaa 200  Q
    |||||||||||||||| ||||| ||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||| ||||||||||     
T  5100251 aaaatcaaattaaagcggatatcgaataatattttcaattcacataacattagattaaagtataattacttgtgtttaatcttccaatttattttccaac 5100152  T
Q  201 atcaca 206  Q
    ||||||    
T  5100151 atcaca 5100146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 16648675 - 16648603
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattacttgtgtttaatcttccaatgtattttccaaaatcaca 206  Q
    ||||||||| ||||||||||| ||||||||||||||||  ||||||||||||| ||| |||||||||||||||||    
T  16648675 ttttcaatttacacaacattagatcaaagtataattac--gtgtttaatcttctaatttattttccaaaatcaca 16648603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 10136375 - 10136432
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaat 188  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  10136375 ttttcaattcacacaacattagatcaaagtataattacttggtgtttaatcttccaat 10136432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 26926773 - 26926718
Alignment:
Q  134 ttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaat 188  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  26926773 ttcaattcacacaacattaaatcaaagtataattagttggtgtttaatcttccaat 26926718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 25844806 - 25844863
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaat 188  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||    
T  25844806 ttttcaattcacacaacattagatcaaagtataattacttggtgtttaatctttcaat 25844863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 38622239 - 38622296
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattacttg-tgtttaatcttccaat 188  Q
    ||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||    
T  38622239 ttttcaattcacacaacattagatcaaagtataattacttgatttttaatcttccaat 38622296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 207
Target Start/End: Original strand, 8138642 - 8138715
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattacttgtgtttaatcttccaatgtattttccaaaatcacat 207  Q
    |||||||||||||||| |||| |||||||||||||||||  | |||||||||||||| | | |||||| |||||||    
T  8138642 ttttcaattcacacaatattatatcaaagtataattact--tatttaatcttccaatttttcttccaagatcacat 8138715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 51040567 - 51040527
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattacttg 172  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  51040567 ttttcaattcacacaacattagatcaaagtataattacttg 51040527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 16036656 - 16036712
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaa 187  Q
    |||||||||||||||||| || |||||||| || |||||| ||||||||||||||||    
T  16036656 ttttcaattcacacaacactagatcaaagtttagttacttggtgtttaatcttccaa 16036712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 187
Target Start/End: Complemental strand, 23191885 - 23191829
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaa 187  Q
    |||||||||||||||||| || |||||||| |||| |||| ||||||||||||||||    
T  23191885 ttttcaattcacacaacactagatcaaagtttaataacttggtgtttaatcttccaa 23191829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 46697363 - 46697400
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattac 169  Q
    |||||||||||||||||| ||||||||||| |||||||    
T  46697363 ttttcaattcacacaacactaaatcaaagtctaattac 46697400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 19798039 - 19798000
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattacttg 172  Q
    ||||||||||||||||||||| |||||| ||||||||||||    
T  19798039 ttttcaattcacacaacattagatcaaa-tataattacttg 19798000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 40166990 - 40167046
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaa 187  Q
    |||||||||||||||| | || |||||||| |||| |||| ||||||||||||||||    
T  40166990 ttttcaattcacacaatactagatcaaagtttaataacttggtgtttaatcttccaa 40167046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 10759407 - 10759333
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattacttgtgtttaatcttccaatgtattttccaaaatcaca 206  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||    
T  10759407 tttttaattcacacaacattaaatcaaaatataattacttgtgtttaatcttccaatttattttccaacatcaca 10759333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 40150245 - 40150320
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaatgtattttccaaaatcaca 206  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||| ||| ||||||    
T  40150245 ttttcaattcacacaacattagatcaaagtataattacttggtgtttaatcttccaatttatttttcaacatcaca 40150320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 29167019 - 29166962
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaat 188  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29167019 ttttcaattcacacaacattaaatcaaagtataattacttggtgtttaatcttccaat 29166962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 23757210 - 23757135
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaatgtattttccaaaatcaca 206  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| | | |||||| ||||||    
T  23757210 ttttcaattcacacaacattaaatctaagtataattacttggtgtttaatcttccaatttttcttccaacatcaca 23757135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 23822666 - 23822591
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaatgtattttccaaaatcaca 206  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| | | |||||| ||||||    
T  23822666 ttttcaattcacacaacattaaatctaagtataattacttggtgtttaatcttccaatttttcttccaacatcaca 23822591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 37646101 - 37646044
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattacttg-tgtttaatcttccaat 188  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  37646101 ttttcaattcacacaacattagatcaaagtataattacttgatgtttaatcttccaat 37646044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 132 - 207
Target Start/End: Original strand, 36424688 - 36424764
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaatgtattttccaaaatcacat 207  Q
    ||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||| | || ||||| |||||||    
T  36424688 ttttcaattcacacaacattagatcatagtataattacttggtgtttaatcttccaattttttatccaacatcacat 36424764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 7452805 - 7452862
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattac-ttgtgtttaatcttccaat 188  Q
    ||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||    
T  7452805 ttttcaattcacacaacattagatcagagtataattactttgtgtttaatcttccaat 7452862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 26668328 - 26668385
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaat 188  Q
    ||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||    
T  26668328 ttttcaattcacacaacattagatcaaagtataattatttggtgtttaatcttccaat 26668385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 26939925 - 26939982
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaat 188  Q
    ||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||    
T  26939925 ttttcaattcacacaacattagatcaaagtataattatttggtgtttaatcttccaat 26939982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 37247845 - 37247788
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaat 188  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||    
T  37247845 ttttcaattcacacaacattagatcaaagtataattacttggtgtttaatctttcaat 37247788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 132 - 184
Target Start/End: Complemental strand, 37536983 - 37536930
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattacttg-tgtttaatcttc 184  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  37536983 ttttcaattcacacaacattatatcaaagtataattacttgatgtttaatcttc 37536930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 20180198 - 20180144
Alignment:
Q  135 tcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaat 188  Q
    |||||||||||||||||| || ||||||||||||||| |||||||||||||||||    
T  20180198 tcaattcacacaacattagattaaagtataattacttggtgtttaatcttccaat 20180144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 6154478 - 6154421
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattacttg-tgtttaatcttccaat 188  Q
    ||||||||||||||||||||| |||||| |||||||||||| |||||||| |||||||    
T  6154478 ttttcaattcacacaacattagatcaaaatataattacttgatgtttaattttccaat 6154421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 39519435 - 39519492
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaat 188  Q
    ||||||||||||||||||||| ||||||||||| |||||| |||||||||||| ||||    
T  39519435 ttttcaattcacacaacattagatcaaagtatatttacttggtgtttaatctttcaat 39519492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 187
Target Start/End: Complemental strand, 35678944 - 35678888
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattacttg-tgtttaatcttccaa 187  Q
    |||||||||||||||||| || |||||||| |||||||||| |||||||||||||||    
T  35678944 ttttcaattcacacaacactagatcaaagtttaattacttgatgtttaatcttccaa 35678888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 39524074 - 39524131
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaat 188  Q
    ||||||||||||||||||||| ||||||||||| ||| || |||||||||||| ||||    
T  39524074 ttttcaattcacacaacattagatcaaagtatatttatttggtgtttaatctttcaat 39524131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 4872932 - 4872988
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaa 187  Q
    |||||||||||||||||| ||||||||||| |||| | || ||||||||||||||||    
T  4872932 ttttcaattcacacaacactaaatcaaagtttaataatttggtgtttaatcttccaa 4872988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 187
Target Start/End: Complemental strand, 9725819 - 9725763
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaa 187  Q
    |||||||||||||||||| || |||||||| |||| |||| ||||||||||||||||    
T  9725819 ttttcaattcacacaacactatatcaaagtttaataacttggtgtttaatcttccaa 9725763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 12104105 - 12104170
Alignment:
Q  142 acacaacattaaatcaaagtataattactt-gtgtttaatcttccaatgtattttccaaaatcaca 206  Q
    ||||||||||| |||||||||||||||||| |||||| |||||| ||| | | |||||| ||||||    
T  12104105 acacaacattagatcaaagtataattacttggtgtttcatcttctaatttttcttccaacatcaca 12104170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 6511654 - 6511614
Alignment:
Q  127 taatattttcaattcacacaacattaaatcaaagtataatt 167  Q
    |||| ||||||||||||||||||||| |||||| |||||||    
T  6511654 taattttttcaattcacacaacattagatcaaaatataatt 6511614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 187
Target Start/End: Complemental strand, 22832552 - 22832496
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaa 187  Q
    |||||||||||||||||| ||||||| | | ||||| ||| ||||||||||||||||    
T  22832552 ttttcaattcacacaacactaaatcataatctaattccttggtgtttaatcttccaa 22832496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 1808500 - 1808575
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaatgtattttccaaaatcaca 206  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||| ||||||    
T  1808500 ttttcaattcacacaacattagatcaaagtataattacttggtgtttaatcttccaatttattttccaacatcaca 1808575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 132 - 204
Target Start/End: Complemental strand, 1909993 - 1909920
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaatgtattttccaaaatca 204  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||| ||||    
T  1909993 ttttcaattcacacaacattagatcaaagtataattacttggtgtttaatcttccaatttattttccaacatca 1909920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 44924967 - 44924892
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataatt-acttgtgtttaatcttccaatgtattttccaaaatcaca 206  Q
    |||||||||||||||| |||| |||||||||||||| | | ||||||||||||||||| |||||||||| ||||||    
T  44924967 ttttcaattcacacaagattagatcaaagtataattgattagtgtttaatcttccaatttattttccaacatcaca 44924892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 38181328 - 38181271
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattacttg-tgtttaatcttccaat 188  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||    
T  38181328 ttttcaattcacacaacattagatcaaagtataattacttgatgtttaatgttccaat 38181271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 40124940 - 40124883
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaat 188  Q
    ||||||||||||||||||||| ||||||||||| |||||| |||||||||||| ||||    
T  40124940 ttttcaattcacacaacattagatcaaagtatatttacttggtgtttaatctttcaat 40124883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 17021305 - 17021345
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattacttg 172  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  17021305 ttttcaattcacacaacattagatcaaagtataattacttg 17021345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 17551742 - 17551782
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattacttg 172  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  17551742 ttttcaattcacacaacattagatcaaagtataattacttg 17551782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 183
Target Start/End: Original strand, 26780153 - 26780205
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatctt 183  Q
    |||||||||||||||||||||||| | ||||||||||||| ||||||||||||    
T  26780153 ttttcaattcacacaacattaaattagagtataattacttagtgtttaatctt 26780205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 15950618 - 15950582
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataatta 168  Q
    ||||||||||||||||||||| |||||||||||||||    
T  15950618 ttttcaattcacacaacattagatcaaagtataatta 15950582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 205
Target Start/End: Complemental strand, 18875431 - 18875357
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattact-tgtgtttaatcttccaatgtattttccaaaatcac 205  Q
    ||||||||||||||||||||| |||||| | ||||||||  || |||||||||||||| | | |||||| |||||    
T  18875431 ttttcaattcacacaacattagatcaaaatttaattactcagtatttaatcttccaatttttcttccaacatcac 18875357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 7002695 - 7002752
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaat 188  Q
    |||||||||||||||| | || |||||||| ||||||||| |||||||||||| ||||    
T  7002695 ttttcaattcacacaatactagatcaaagtctaattacttggtgtttaatctttcaat 7002752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 28564343 - 28564287
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattacttgtgtttaatcttccaat 188  Q
    ||||||||  ||||||||||| |||||||||||||   | |||||||||||||||||    
T  28564343 ttttcaatgtacacaacattagatcaaagtataatatttggtgtttaatcttccaat 28564287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 16422096 - 16422171
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaatgtattttccaaaatcaca 206  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||| ||||||    
T  16422096 ttttcaattcacacaacattagatcaaagtataattacttggtgtttaatcttccaatttattttccaacatcaca 16422171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 12822956 - 12822881
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaatgtattttccaaaatcaca 206  Q
    ||||||||||||||||||||| ||||||||||||||| || |||||| |||||||||| |||||||||| ||||||    
T  12822956 ttttcaattcacacaacattagatcaaagtataattatttggtgtttgatcttccaatttattttccaacatcaca 12822881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 5270469 - 5270412
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaat 188  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  5270469 ttttcaattcacacaacattagatcaaagtataattacttggtgtttaatcttccaat 5270412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 8694763 - 8694820
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaat 188  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  8694763 ttttcaattcacacaacattagatcaaagtataattacttggtgtttaatcttccaat 8694820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 55252695 - 55252752
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattacttg-tgtttaatcttccaat 188  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  55252695 ttttcaattcacacaacattaaatcaaagtataattacttgatgtttagtcttccaat 55252752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 13060517 - 13060592
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaatgtattttccaaaatcaca 206  Q
    |||||||||||||||| |||| |||||||||||||||||| | ||||||||||||||| |||||| ||| ||||||    
T  13060517 ttttcaattcacacaatattagatcaaagtataattacttggggtttaatcttccaatttatttttcaacatcaca 13060592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 5925850 - 5925793
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaat 188  Q
    ||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||    
T  5925850 ttttcaattcacacaacattatatcaaagtataattacttggtatttaatcttccaat 5925793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 31274564 - 31274621
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaat 188  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||    
T  31274564 ttttcaattcacacaacattagatcaaagtataattacttggtgtttaatctttcaat 31274621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 31728412 - 31728355
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaat 188  Q
    ||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||    
T  31728412 ttttcaattcacacaacattagatcaaattataattacttggtgtttaatcttccaat 31728355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 37263609 - 37263552
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaat 188  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||    
T  37263609 ttttcaattcacacaacattagatcaaagtataattacttggtgtttaatctttcaat 37263552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 140 - 206
Target Start/End: Original strand, 6943820 - 6943887
Alignment:
Q  140 tcacacaacattaaatcaaagtataattacttg-tgtttaatcttccaatgtattttccaaaatcaca 206  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||| | | |||||| ||||||    
T  6943820 tcacacaacagtaaatcaaagtataattacttgatgtttaatcttccaatttttcttccaacatcaca 6943887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 33468049 - 33467974
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaatgtattttccaaaatcaca 206  Q
    ||||||||| ||||||||||| |||||||||||||||||| |||||||||||| |||| | | |||||| ||||||    
T  33468049 ttttcaatttacacaacattagatcaaagtataattacttggtgtttaatctttcaatttttcttccaacatcaca 33467974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 51698979 - 51699052
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaatgtattttccaaaatca 204  Q
    |||||||||||| ||||||||  |||||||||||||| || |||||||||||| |||| |||||||||| ||||    
T  51698979 ttttcaattcacgcaacattagttcaaagtataattatttggtgtttaatctttcaatttattttccaacatca 51699052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 27183275 - 27183315
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattacttg 172  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  27183275 ttttcaattcacacaacattatatcaaagtataattacttg 27183315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 19907338 - 19907413
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaatgtattttccaaaatcaca 206  Q
    |||||||||||||||||| || |||||| ||||||||||| |||||||||||| |||| | | |||||| ||||||    
T  19907338 ttttcaattcacacaacactagatcaaaatataattacttggtgtttaatctttcaatttttcttccaacatcaca 19907413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 205
Target Start/End: Complemental strand, 32081211 - 32081139
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattact--tgtgtttaatcttccaatgtattttccaaaatcac 205  Q
    |||||||||||||||   ||| |||||||||||||||||  | |||||||||||||||| |||||||||| |||||    
T  32081211 ttttcaattcacaca---ttagatcaaagtataattactattatgtttaatcttccaatttattttccaacatcac 32081139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 2820842 - 2820898
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaat 188  Q
    |||||||||||||||||| || |||||| ||||||||||| |||||||||||||||||    
T  2820842 ttttcaattcacacaacactagatcaaa-tataattacttggtgtttaatcttccaat 2820898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 187
Target Start/End: Complemental strand, 8028201 - 8028148
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattacttgtgtttaatcttccaa 187  Q
    ||||||||||||||||||||  |||||||| ||||||||  |||||||||||||||    
T  8028201 ttttcaattcacacaacattcgatcaaagtttaattact--tgtttaatcttccaa 8028148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 29349252 - 29349198
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttcca 186  Q
    |||||||||||| ||||| ||| ||||||||||||||||| |||||||||||||||    
T  29349252 ttttcaattcactcaacactaa-tcaaagtataattacttagtgtttaatcttcca 29349198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 37258909 - 37258854
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaat 188  Q
    ||||||||||||||||||||| |||||||  ||||||||| |||||||||||| ||||    
T  37258909 ttttcaattcacacaacattagatcaaag--taattacttggtgtttaatctttcaat 37258854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 184
Target Start/End: Complemental strand, 8029381 - 8029328
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttc 184  Q
    |||||||||||||||| | || |||||||| ||||||||| |||||||||||||    
T  8029381 ttttcaattcacacaatactagatcaaagtttaattacttggtgtttaatcttc 8029328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 12875454 - 12875507
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttc 184  Q
    |||||||||||||||||| || || ||||| ||||||||| |||||||||||||    
T  12875454 ttttcaattcacacaacactagatgaaagtctaattacttggtgtttaatcttc 12875507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 19103016 - 19103072
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaa 187  Q
    |||||||||||||||||| || |||||||| |||| |||| | ||||||||||||||    
T  19103016 ttttcaattcacacaacactagatcaaagtttaataacttggagtttaatcttccaa 19103072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 19107625 - 19107685
Alignment:
Q  129 atattttcaattcacacaaca-ttaaatcaaagtataattactt-gtgtttaatcttccaa 187  Q
    ||||||||||||||||||| | ||| |||||||| |||| |||| ||||||||||||||||    
T  19107625 atattttcaattcacacaatacttagatcaaagtttaataacttggtgtttaatcttccaa 19107685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 187
Target Start/End: Complemental strand, 48275885 - 48275829
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattacttg-tgtttaatcttccaa 187  Q
    ||||||||||||||||||  | |||||||| |||| ||||| |||||||||||||||    
T  48275885 ttttcaattcacacaacacaagatcaaagtttaataacttgatgtttaatcttccaa 48275829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 12802332 - 12802407
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaatgtattttccaaaatcaca 206  Q
    ||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||| |||||||||| ||||||    
T  12802332 ttttcaattcacacaacattagattaaagtataattacttggtgtttaatcttccaatttattttccaacatcaca 12802407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 132 - 200
Target Start/End: Complemental strand, 42625624 - 42625555
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaatgtattttccaaa 200  Q
    ||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||| |||||| ||||    
T  42625624 ttttcaattcacataacattagatcaaagtataattacttggtgtttaatcttccaatttatttttcaaa 42625555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 4931273 - 4931330
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaat 188  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||    
T  4931273 ttttcaattcacacaacattatatcaaagtataattacttggtgtttaatctttcaat 4931330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 21672254 - 21672329
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaatgtattttccaaaatcaca 206  Q
    ||||||||||||||||| ||| |||||||||||||||||| ||||||| ||||||||| | | |||||| ||||||    
T  21672254 ttttcaattcacacaacgttagatcaaagtataattacttggtgtttattcttccaatttttcttccaacatcaca 21672329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 23151732 - 23151683
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattacttg-tgtttaat 180  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  23151732 ttttcaattcacacaacattagatcaaagtataattacttgatgtttaat 23151683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 44508342 - 44508285
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattacttg-tgtttaatcttccaat 188  Q
    |||||||||||||||| |||| ||||||||||||||||||| | ||||||||||||||    
T  44508342 ttttcaattcacacaatattagatcaaagtataattacttgatatttaatcttccaat 44508285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 206
Target Start/End: Original strand, 3046618 - 3046698
Alignment:
Q  127 taatattttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaatgtattttccaaaatcaca 206  Q
    |||| ||||||||||||||||| ||| |||||| ||||||||||| |||||||||||| |||| | | |||||| ||||||    
T  3046618 taattttttcaattcacacaactttatatcaaattataattacttggtgtttaatctttcaatttttcttccaacatcaca 3046698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 183
Target Start/End: Complemental strand, 10392133 - 10392081
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatctt 183  Q
    |||||||||||||||||| || |||||||||||||||||| ||||||||||||    
T  10392133 ttttcaattcacacaacactagatcaaagtataattacttggtgtttaatctt 10392081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 12257071 - 12257127
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaa 187  Q
    ||||||||| ||||||||||||||||||||||||||| || ||| ||||||||||||    
T  12257071 ttttcaatttacacaacattaaatcaaagtataattatttggtgattaatcttccaa 12257127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 182
Target Start/End: Complemental strand, 23247605 - 23247554
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatct 182  Q
    ||||||||||||| ||||||| |||||||||||||||||| |||||||||||    
T  23247605 ttttcaattcacataacattagatcaaagtataattacttggtgtttaatct 23247554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 2595820 - 2595877
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaat 188  Q
    ||||||||||||||||||||| || ||||| |||||| || |||||||||||||||||    
T  2595820 ttttcaattcacacaacattagattaaagtgtaattatttggtgtttaatcttccaat 2595877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 3881021 - 3881078
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaat 188  Q
    |||||||||||| ||| |||| |||||||||||||||||| || ||||||||||||||    
T  3881021 ttttcaattcacgcaatattagatcaaagtataattacttggtatttaatcttccaat 3881078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 8269360 - 8269397
Alignment:
Q  134 ttcaattcacacaacattaaatcaaagtataattactt 171  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  8269360 ttcaattcacacaatattagatcaaagtataattactt 8269397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 26342255 - 26342308
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattacttg-tgtttaatcttc 184  Q
    ||||||||||||| || ||||||| |||||||||||||||| | ||||||||||    
T  26342255 ttttcaattcacataatattaaattaaagtataattacttgatatttaatcttc 26342308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 187
Target Start/End: Complemental strand, 26286202 - 26286146
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattacttg-tgtttaatcttccaa 187  Q
    ||||||||| | |||||| || |||||||| |||||||||| |||||||||||||||    
T  26286202 ttttcaatttatacaacactagatcaaagtttaattacttggtgtttaatcttccaa 26286146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 8159 - 8216
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaat 188  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8159 ttttcaattcacacaacattaaatcaaagtataattacttggtgtttaatcttccaat 8216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 20747343 - 20747286
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattacttg-tgtttaatcttccaat 188  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  20747343 ttttcaattcacacaacattaaatcaaagtataattacttgatgtttaatcttccaat 20747286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 132 - 208
Target Start/End: Complemental strand, 33686690 - 33686613
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattacttg-tgtttaatcttccaatgtattttccaaaatcacatt 208  Q
    |||||||||||||||| |||| ||||||||||||||| ||| |||||||||||||||| |||||||||| ||||||||    
T  33686690 ttttcaattcacacaaaattagatcaaagtataattatttgatgtttaatcttccaatttattttccaacatcacatt 33686613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 22694431 - 22694356
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaatgtattttccaaaatcaca 206  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| | | |||||| ||||||    
T  22694431 ttttcaattcacacaacattagatcaaagtataattacttggtgtttaatcttccaatttttcttccaacatcaca 22694356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 138 - 204
Target Start/End: Complemental strand, 2699154 - 2699087
Alignment:
Q  138 attcacacaacattaaatcaaagtataattacttg-tgtttaatcttccaatgtattttccaaaatca 204  Q
    ||||||||||||||| || |||||||||||||||| |||||||||||||||| |||||||||| ||||    
T  2699154 attcacacaacattagattaaagtataattacttgatgtttaatcttccaatttattttccaacatca 2699087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 11533748 - 11533673
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaatgtattttccaaaatcaca 206  Q
    ||||||||||||||||||||| |||||| ||||||||||| ||||||||||||| ||| |||| ||||| ||||||    
T  11533748 ttttcaattcacacaacattagatcaaactataattacttggtgtttaatcttctaatttattctccaacatcaca 11533673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 11559258 - 11559183
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaatgtattttccaaaatcaca 206  Q
    ||||||||||||||||||||| |||||| ||||||||||| ||||||||||||| ||| |||| ||||| ||||||    
T  11559258 ttttcaattcacacaacattagatcaaactataattacttggtgtttaatcttctaatttattctccaacatcaca 11559183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 132 - 194
Target Start/End: Complemental strand, 11569738 - 11569675
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaatgtattt 194  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||| |||||    
T  11569738 ttttcaattcacacaacattagatcaaagtataattacttggtgtttaatcttctaatttattt 11569675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 17600427 - 17600484
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaat 188  Q
    ||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||    
T  17600427 ttttcaattcacacaacattagatcaaagtatgattacttggtgtttaatcttccaat 17600484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 6406906 - 6406849
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaat 188  Q
    |||||||||||||||||| || |||||||||||||||||| |||||||||||| ||||    
T  6406906 ttttcaattcacacaacaatagatcaaagtataattacttggtgtttaatctttcaat 6406849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 11429007 - 11429064
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataatta-cttgtgtttaatcttccaat 188  Q
    |||||||||||| |||||||| ||||||||||||||| || |||||||||||||||||    
T  11429007 ttttcaattcacgcaacattagatcaaagtataattatctggtgtttaatcttccaat 11429064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 17963604 - 17963547
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaat 188  Q
    ||||||||||||||| ||||| ||||||||||| |||||| |||||||||||||||||    
T  17963604 ttttcaattcacacatcattagatcaaagtatagttacttggtgtttaatcttccaat 17963547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 187
Target Start/End: Complemental strand, 12797828 - 12797772
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaa 187  Q
    |||||||||||||||||| || |||||||| ||||||||| ||||||||||||||||    
T  12797828 ttttcaattcacacaacactagatcaaagtctaattacttggtgtttaatcttccaa 12797772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 16835207 - 16835150
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaat 188  Q
    |||| |||||||||||||||| ||||||||||| |||||| |||||||||||| ||||    
T  16835207 tttttaattcacacaacattagatcaaagtatatttacttggtgtttaatctttcaat 16835150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 12405406 - 12405349
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattacttg-tgtttaatcttccaat 188  Q
    |||| |||| ||||||||||| |||||| |||||||| ||| ||||||||||||||||    
T  12405406 tttttaattaacacaacattagatcaaaatataattagttgatgtttaatcttccaat 12405349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 3e-19; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 132 - 199
Target Start/End: Original strand, 46965062 - 46965130
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaatgtattttccaa 199  Q
    ||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||| ||||||||||    
T  46965062 ttttcaattcacacaacattagatcaaagtataattatttggtgtttaatcttccaatttattttccaa 46965130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 20175440 - 20175515
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaatgtattttccaaaatcaca 206  Q
    ||||||||| ||||||||||| |||||||||||||||||| |||||||||||| |||| |||||||||| ||||||    
T  20175440 ttttcaattaacacaacattagatcaaagtataattacttggtgtttaatctttcaatttattttccaacatcaca 20175515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 20521011 - 20521086
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaatgtattttccaaaatcaca 206  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| | | |||||| ||||||    
T  20521011 ttttcaattcacacaacattagatcaaagtataattacttggtgtttaatcttccaatttttcttccaacatcaca 20521086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 757410 - 757353
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaat 188  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  757410 ttttcaattcacacaacattagatcaaagtataattacttggtgtttaatcttccaat 757353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 18473056 - 18473113
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattac-ttgtgtttaatcttccaat 188  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  18473056 ttttcaattcacacaacattagatcaaagtataattactttgtgtttaatcttccaat 18473113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 185
Target Start/End: Complemental strand, 12970854 - 12970800
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttcc 185  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  12970854 ttttcaattcacacaacattaaatcaacgtataattacttggtgtttaatcttcc 12970800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 7570261 - 7570204
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaat 188  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||    
T  7570261 ttttcaattcacacaacattagatcaaagtataattacttggtgtttaatctttcaat 7570204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 18468262 - 18468319
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaat 188  Q
    ||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||    
T  18468262 ttttcaattcacacaacattagatcaaactataattacttggtgtttaatcttccaat 18468319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 23660535 - 23660478
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaat 188  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||    
T  23660535 ttttcaattcacacaacattagatcaaagtataattacttggtgtttaatctttcaat 23660478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 23665167 - 23665110
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaat 188  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||    
T  23665167 ttttcaattcacacaacattagatcaaagtataattacttggtgtttaatctttcaat 23665110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 187
Target Start/End: Complemental strand, 3656303 - 3656247
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaa 187  Q
    |||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||    
T  3656303 ttttcaattcacacaacactaaatcaaagtttaattacttggtgtttaatcttccaa 3656247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 188
Target Start/End: Complemental strand, 32473185 - 32473133
Alignment:
Q  137 aattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaat 188  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  32473185 aattcacacaacattagatcaaagtataattacttggtgtttaatcttccaat 32473133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 55326827 - 55326883
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaat 188  Q
    ||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||    
T  55326827 ttttcaattcacacaacattagatcaaa-tataattacttggtgtttaatcttccaat 55326883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 206
Target Start/End: Original strand, 3426125 - 3426195
Alignment:
Q  137 aattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaatgtattttccaaaatcaca 206  Q
    |||||||||||||| | || ||||||||||||||| ||||||||||||  ||| |||||||||| ||||||    
T  3426125 aattcacacaacataagattaaagtataattacttggtgtttaatctttaaatttattttccaacatcaca 3426195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 12964929 - 12964879
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatc 181  Q
    |||||||||||  ||||||||||||||||||||||||||| ||||||||||    
T  12964929 ttttcaattcatgcaacattaaatcaaagtataattacttggtgtttaatc 12964879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 27709978 - 27710035
Alignment:
Q  132 ttttcaattcacacaacatt-aaatcaaagtataattactt-gtgtttaatcttccaat 188  Q
    |||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||    
T  27709978 ttttcaattcacacaacattaaaatcaaagtataa-tacttggtgtttaatcttccaat 27710035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 38891166 - 38891222
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattact-tgtgtttaatcttccaa 187  Q
    ||||||||||||| ||||||| |||||||| ||||||||  ||||||||||||||||    
T  38891166 ttttcaattcacaaaacattagatcaaagtttaattactcggtgtttaatcttccaa 38891222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 55432275 - 55432330
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaa 187  Q
    ||||||||||||||| ||||| |||||| ||||||||||| ||||||||||||||||    
T  55432275 ttttcaattcacacagcattagatcaaa-tataattacttggtgtttaatcttccaa 55432330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 14437736 - 14437682
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaat 188  Q
    ||||||||||||||||||    |||||||||||||||||| |||||||||||||||||    
T  14437736 ttttcaattcacacaacag---atcaaagtataattacttggtgtttaatcttccaat 14437682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 3e-19; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 132 - 199
Target Start/End: Original strand, 12361295 - 12361363
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaatgtattttccaa 199  Q
    ||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||| ||||||||||    
T  12361295 ttttcaattcacacaacattagatcaaagtataattatttggtgtttaatcttccaatttattttccaa 12361363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 20101696 - 20101621
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaatgtattttccaaaatcaca 206  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| | | |||||| ||||||    
T  20101696 ttttcaattcacacaacattagatcaaagtataattacttggtgtttaatcttccaatttttcttccaacatcaca 20101621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 25496430 - 25496355
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaatgtattttccaaaatcaca 206  Q
    |||||||||||||||| |||| ||||||||||||||| || ||||||||||||||||| |||||||||| ||||||    
T  25496430 ttttcaattcacacaatattagatcaaagtataattatttggtgtttaatcttccaatttattttccaacatcaca 25496355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 9179772 - 9179715
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaat 188  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  9179772 ttttcaattcacacaacattagatcaaagtataattacttggtgtttaatcttccaat 9179715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 12797980 - 12798055
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaatgtattttccaaaatcaca 206  Q
    ||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||| | | |||||| ||||||    
T  12797980 ttttcaattcacacaacattagatcaaagtataattatttggtgtttaatcttccaatttttcttccaacatcaca 12798055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 25477335 - 25477260
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattacttg-tgtttaatcttccaatgtattttccaaaatcaca 206  Q
    |||| ||||| |||||||||||||||||||||||||| ||| |||||||||||||||| |||||| ||| ||||||    
T  25477335 tttttaattcgcacaacattaaatcaaagtataattatttgatgtttaatcttccaatttatttttcaacatcaca 25477260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 1934055 - 1933998
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaat 188  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||    
T  1934055 ttttcaattcacacaacattagatcaaagtataattacttggtgtttaatctttcaat 1933998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 17968010 - 17967953
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattacttg-tgtttaatcttccaat 188  Q
    |||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  17968010 tttttaattcacacaacattagatcaaagtataattacttgatgtttaatcttccaat 17967953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 17974397 - 17974340
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattacttg-tgtttaatcttccaat 188  Q
    ||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||    
T  17974397 ttttcaattcacacaacattagatcaaagtataattatttgatgtttaatcttccaat 17974340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 18345466 - 18345523
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaat 188  Q
    |||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  18345466 tttttaattcacacaacattagatcaaagtataattacttggtgtttaatcttccaat 18345523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 30651964 - 30652021
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaat 188  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||    
T  30651964 ttttcaattcacacaacattagatcaaagtataattacttggtgtttaatctttcaat 30652021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 9184463 - 9184406
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaat 188  Q
    ||||||||||||||||||||| |||||||| |||||| || |||||||||||||||||    
T  9184463 ttttcaattcacacaacattagatcaaagtttaattatttggtgtttaatcttccaat 9184406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 19891553 - 19891496
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattac-ttgtgtttaatcttccaat 188  Q
    |||||||||||||||| |||| |||||||||||||||| | |||||||||||||||||    
T  19891553 ttttcaattcacacaagattagatcaaagtataattacatggtgtttaatcttccaat 19891496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 187
Target Start/End: Complemental strand, 42925722 - 42925666
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaa 187  Q
    |||||||||||||||||| || |||||||| ||||||||| ||||||||||||||||    
T  42925722 ttttcaattcacacaacactagatcaaagtttaattacttggtgtttaatcttccaa 42925666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 19896998 - 19897053
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattacttg-tgtttaatcttcca 186  Q
    ||||||||||||||||||||| |||||| |||||||||||| | ||||||||||||    
T  19896998 ttttcaattcacacaacattatatcaaaatataattacttgatatttaatcttcca 19897053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 29678728 - 29678803
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaatgtattttccaaaatcaca 206  Q
    ||||||||||||||||||||| |||||| ||||||| ||| || |||||||||||||| | | |||||| ||||||    
T  29678728 ttttcaattcacacaacattagatcaaaatataattccttagtatttaatcttccaatttttcttccaacatcaca 29678803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 28604135 - 28604191
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaa 187  Q
    |||||||||||||||||| || |||||| | ||||||||| ||||||||||||||||    
T  28604135 ttttcaattcacacaacactagatcaaaatttaattacttggtgtttaatcttccaa 28604191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 31329112 - 31329168
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaa 187  Q
    |||||||||||||||||| || |||||||| |||| |||| ||||||||||||||||    
T  31329112 ttttcaattcacacaacactagatcaaagtttaataacttggtgtttaatcttccaa 31329168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 31335833 - 31335889
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaa 187  Q
    |||||||||||||||||| || |||||||| |||| |||| ||||||||||||||||    
T  31335833 ttttcaattcacacaacactagatcaaagtttaataacttggtgtttaatcttccaa 31335889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 442986 - 442911
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaatgtattttccaaaatcaca 206  Q
    ||||||||||||||||||||| ||||||||||||||| ||  |||||||||||||||| |||||||||| ||||||    
T  442986 ttttcaattcacacaacattagatcaaagtataattatttaatgtttaatcttccaatttattttccaacatcaca 442911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 5114 - 5171
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaat 188  Q
    ||||||||||||||||||||| ||||||||||| | |||| |||||||||||| ||||    
T  5114 ttttcaattcacacaacattagatcaaagtatattaacttggtgtttaatctttcaat 5171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 30227 - 30284
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaat 188  Q
    ||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||    
T  30227 ttttcaattcacacaacattagatcaaaatataattacttggtgtttaatcttccaat 30284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 5019 - 5094
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattac-ttgtgtttaatcttccaatgtattttccaaaatcaca 206  Q
    ||||||||||||||||||||| |||||||||||||||| | |||||||||||| |||| | | |||||| ||||||    
T  5019 ttttcaattcacacaacattagatcaaagtataattacgtggtgtttaatctttcaatttttcttccaacatcaca 5094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 132 - 187
Target Start/End: Complemental strand, 64940 - 64885
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattacttgtgtttaatcttccaa 187  Q
    |||| ||||||||||||| || |||||||| |||||||||||||||||||||||||    
T  64940 tttttaattcacacaacactagatcaaagtttaattacttgtgtttaatcttccaa 64885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 36171 - 36246
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaatcttccaatgtattttccaaaatcaca 206  Q
    ||||||||||| ||||||||| |||||| |||||||| || |||||||||||| |||| |||||| ||| ||||||    
T  36171 ttttcaattcatacaacattagatcaaaatataattatttggtgtttaatctttcaatttatttttcaacatcaca 36246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 6282 - 6331
Alignment:
Q  132 ttttcaattcacacaacattaaatcaaagtataattactt-gtgtttaat 180  Q
    ||||||||||||| ||||||| ||| |||||||||||||| |||||||||    
T  6282 ttttcaattcacataacattagatcgaagtataattacttggtgtttaat 6331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University