View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12174_low_6 (Length: 563)

Name: NF12174_low_6
Description: NF12174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12174_low_6
NF12174_low_6
[»] chr8 (8 HSPs)
chr8 (1-551)||(30172644-30173192)
chr8 (111-141)||(5290566-5290596)
chr8 (111-149)||(12972773-12972811)
chr8 (100-154)||(40356783-40356837)
chr8 (105-142)||(6918955-6918992)
chr8 (105-154)||(26717169-26717218)
chr8 (110-154)||(4510940-4510984)
chr8 (113-149)||(6966825-6966861)
[»] chr1 (6 HSPs)
chr1 (115-155)||(4180714-4180754)
chr1 (111-157)||(46712282-46712328)
chr1 (100-150)||(870961-871011)
chr1 (118-151)||(41638432-41638465)
chr1 (114-142)||(42550165-42550193)
chr1 (111-143)||(50764489-50764521)
[»] chr7 (4 HSPs)
chr7 (95-142)||(45078217-45078264)
chr7 (114-157)||(5369807-5369850)
chr7 (100-155)||(39362040-39362095)
chr7 (110-155)||(29574715-29574760)
[»] chr6 (3 HSPs)
chr6 (105-154)||(2732338-2732387)
chr6 (111-149)||(31668800-31668838)
chr6 (110-142)||(3217304-3217336)
[»] chr5 (9 HSPs)
chr5 (114-154)||(34198347-34198387)
chr5 (96-143)||(29365542-29365589)
chr5 (111-149)||(26516215-26516253)
chr5 (100-145)||(6738511-6738556)
chr5 (111-140)||(7096242-7096271)
chr5 (100-145)||(10391274-10391319)
chr5 (110-150)||(1191489-1191529)
chr5 (111-143)||(20982250-20982282)
chr5 (110-149)||(28776891-28776931)
[»] chr4 (5 HSPs)
chr4 (95-154)||(23819002-23819061)
chr4 (110-153)||(28582023-28582066)
chr4 (119-154)||(30207693-30207728)
chr4 (112-149)||(54414866-54414903)
chr4 (110-142)||(43932357-43932389)
[»] chr3 (6 HSPs)
chr3 (110-149)||(28842971-28843010)
chr3 (105-147)||(16790465-16790507)
chr3 (99-145)||(49772771-49772817)
chr3 (111-144)||(33307695-33307728)
chr3 (119-155)||(5407580-5407616)
chr3 (111-143)||(41028966-41028998)
[»] chr2 (4 HSPs)
chr2 (111-158)||(17952816-17952863)
chr2 (100-154)||(10150667-10150721)
chr2 (100-149)||(44606192-44606241)
chr2 (119-151)||(37053509-37053541)
[»] scaffold0654 (1 HSPs)
scaffold0654 (111-149)||(6752-6790)
[»] scaffold0014 (1 HSPs)
scaffold0014 (111-149)||(116671-116709)


Alignment Details
Target: chr8 (Bit Score: 532; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 1 - 551
Target Start/End: Original strand, 30172644 - 30173192
Alignment:
Q  1 aactctgctccaacccacgccgaagaagcttctgttgataatcgtattccagctacaatcattaccggttttctcggctctggaaaggtgctactttatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30172644 aactctgctccaacccacgccgaagaagcttctgttgataatcgtattccagctacaatcattaccggttttctcggctctggaaaggtgctactttatt 30172743  T
Q  101 tttattatgaaaatagcttatacataagcacttgtatgataagtgcttaattaaatttagtttataatcgagttttctgtactgcagaccactcttctga 200  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30172744 tttattatcaaaatagcttatacataagcacttgtatgataagtgcttaattaaatttagtttataatcgagttttctgtactgcagaccactcttctga 30172843  T
Q  201 atcatattctcacatcccaacatggcaagcggatagctgtcattgaaaatgaggtatcgagtttgttttgtagagaaattgtaaaatgagggaagaattt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  30172844 atcatattctcacatcccaacatggcaagcggatagctgtcattgaaaatgaggtatcgagtttgttttgtagataaattgtaaaatgagggaagaattt 30172943  T
Q  301 gattgtcttattataatacggatttacagtttttcatgaaattattttgttgtgaataatgcagtttggtgaggttgatattgatggatcactggttgct 400  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30172944 gattgtct--ttataatacggatttacagtttttcatgaaattattttgttgtgaataatgcagtttggtgaggttgatattgatggatcactggttgct 30173041  T
Q  401 agccattcttctgtgaatggtgaagacattatcatggtcaataatggctgcctatgctgcactgtgcgaggagatctagttaaaatgctgttggagttgg 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30173042 agccattcttctgtgaatggtgaagacattatcatggtcaataatggctgcctatgctgcactgtgcgaggagatctagttaaaatgctgttggagttgg 30173141  T
Q  501 ttaggaagaaaagagacaaatttgatcacattgttattgaaaccacaggtt 551  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30173142 ttaggaagaaaagagacaaatttgatcacattgttattgaaaccacaggtt 30173192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 111 - 141
Target Start/End: Complemental strand, 5290596 - 5290566
Alignment:
Q  111 aaatagcttatacataagcacttgtatgata 141  Q
    |||||||||||||||||||||||||||||||    
T  5290596 aaatagcttatacataagcacttgtatgata 5290566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 111 - 149
Target Start/End: Complemental strand, 12972811 - 12972773
Alignment:
Q  111 aaatagcttatacataagcacttgtatgataagtgctta 149  Q
    ||||||||||||||||||||||| |||||||| ||||||    
T  12972811 aaatagcttatacataagcacttatatgataaatgctta 12972773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 154
Target Start/End: Complemental strand, 40356837 - 40356783
Alignment:
Q  100 ttttattatgaaaatagcttatacataagcacttgtatgataagtgcttaattaa 154  Q
    |||||||||  |||||||||||| |||||||||| ||||| ||||| ||||||||    
T  40356837 ttttattatataaatagcttatagataagcacttatatgacaagtgtttaattaa 40356783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 6918992 - 6918955
Alignment:
Q  105 ttatgaaaatagcttatacataagcacttgtatgataa 142  Q
    |||| |||||||||||||||||||||||| ||||||||    
T  6918992 ttataaaaatagcttatacataagcacttatatgataa 6918955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 154
Target Start/End: Complemental strand, 26717218 - 26717169
Alignment:
Q  105 ttatgaaaatagcttatacataagcacttgtatgataagtgcttaattaa 154  Q
    |||| ||| |||||||| || |||||||| ||||||||||||||||||||    
T  26717218 ttataaaattagcttattcagaagcacttatatgataagtgcttaattaa 26717169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 110 - 154
Target Start/End: Complemental strand, 4510984 - 4510940
Alignment:
Q  110 aaaatagcttatacataagcacttgtatgataagtgcttaattaa 154  Q
    ||||||||||||| ||||||| ||| |||||||| ||||||||||    
T  4510984 aaaatagcttataaataagcaattgcatgataagcgcttaattaa 4510940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 113 - 149
Target Start/End: Complemental strand, 6966861 - 6966825
Alignment:
Q  113 atagcttatacataagcacttgtatgataagtgctta 149  Q
    |||||||||||||||||| || |||||||||||||||    
T  6966861 atagcttatacataagcatttatatgataagtgctta 6966825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 4180714 - 4180754
Alignment:
Q  115 agcttatacataagcacttgtatgataagtgcttaattaaa 155  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  4180714 agcttatacataagcacttatatgataagtgcttaattaaa 4180754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 111 - 157
Target Start/End: Complemental strand, 46712328 - 46712282
Alignment:
Q  111 aaatagcttatacataagcacttgtatgataagtgcttaattaaatt 157  Q
    ||||||||||||| ||||||||||| ||||||||| |||||||||||    
T  46712328 aaatagcttatacctaagcacttgtgtgataagtgtttaattaaatt 46712282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 871011 - 870961
Alignment:
Q  100 ttttattatgaaaatagcttatacataagcacttgtatgataagtgcttaa 150  Q
    |||| |||| ||||||| |||||||||||||||| ||||||||| ||||||    
T  871011 ttttgttataaaaatagtttatacataagcacttatatgataagcgcttaa 870961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 151
Target Start/End: Original strand, 41638432 - 41638465
Alignment:
Q  118 ttatacataagcacttgtatgataagtgcttaat 151  Q
    |||||||||||||||| |||||||||||||||||    
T  41638432 ttatacataagcacttatatgataagtgcttaat 41638465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 114 - 142
Target Start/End: Complemental strand, 42550193 - 42550165
Alignment:
Q  114 tagcttatacataagcacttgtatgataa 142  Q
    |||||||||||||||||||||||||||||    
T  42550193 tagcttatacataagcacttgtatgataa 42550165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 111 - 143
Target Start/End: Original strand, 50764489 - 50764521
Alignment:
Q  111 aaatagcttatacataagcacttgtatgataag 143  Q
    |||||||||||||||||||| ||||||||||||    
T  50764489 aaatagcttatacataagcaattgtatgataag 50764521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 95 - 142
Target Start/End: Complemental strand, 45078264 - 45078217
Alignment:
Q  95 tttatttttattatgaaaatagcttatacataagcacttgtatgataa 142  Q
    ||||||||| |||| |||||||||||||||||||||||| ||||||||    
T  45078264 tttatttttgttataaaaatagcttatacataagcacttatatgataa 45078217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 157
Target Start/End: Original strand, 5369807 - 5369850
Alignment:
Q  114 tagcttatacataagcacttgtatgataagtgcttaattaaatt 157  Q
    |||||||||||||||||||| | || ||||||||||||||||||    
T  5369807 tagcttatacataagcacttatttgctaagtgcttaattaaatt 5369850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 155
Target Start/End: Complemental strand, 39362095 - 39362040
Alignment:
Q  100 ttttattatgaaaatagcttatacataagcacttgtatgataagtgcttaattaaa 155  Q
    |||||||||||||||||||||||||||||  ||| |   |||||||||||||||||    
T  39362095 ttttattatgaaaatagcttatacataagtgcttatgctataagtgcttaattaaa 39362040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 155
Target Start/End: Original strand, 29574715 - 29574760
Alignment:
Q  110 aaaatagcttatacataagcacttgtatgataagtgcttaattaaa 155  Q
    ||||||||||||||||||||| || ||||||||  |||||||||||    
T  29574715 aaaatagcttatacataagcatttatatgataaacgcttaattaaa 29574760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 105 - 154
Target Start/End: Original strand, 2732338 - 2732387
Alignment:
Q  105 ttatgaaaatagcttatacataagcacttgtatgataagtgcttaattaa 154  Q
    |||| |||||||||||||||||| |||||| |||||| ||||||||||||    
T  2732338 ttataaaaatagcttatacataaacacttgcatgataggtgcttaattaa 2732387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 111 - 149
Target Start/End: Original strand, 31668800 - 31668838
Alignment:
Q  111 aaatagcttatacataagcacttgtatgataagtgctta 149  Q
    ||||||||||||||||||||||| |||||||| ||||||    
T  31668800 aaatagcttatacataagcacttatatgataattgctta 31668838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 3217304 - 3217336
Alignment:
Q  110 aaaatagcttatacataagcacttgtatgataa 142  Q
    |||||||||||||||||||||||| ||||||||    
T  3217304 aaaatagcttatacataagcacttatatgataa 3217336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 154
Target Start/End: Complemental strand, 34198387 - 34198347
Alignment:
Q  114 tagcttatacataagcacttgtatgataagtgcttaattaa 154  Q
    |||||| ||||||||||||| ||||||||||||||||||||    
T  34198387 tagcttgtacataagcacttatatgataagtgcttaattaa 34198347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 143
Target Start/End: Complemental strand, 29365589 - 29365542
Alignment:
Q  96 ttatttttattatgaaaatagcttatacataagcacttgtatgataag 143  Q
    |||||||||| || |||||||||||||||| ||||||| |||||||||    
T  29365589 ttatttttatcataaaaatagcttatacatgagcacttatatgataag 29365542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 111 - 149
Target Start/End: Complemental strand, 26516253 - 26516215
Alignment:
Q  111 aaatagcttatacataagcacttgtatgataagtgctta 149  Q
    ||||||||||||||||||||||| ||||||||| |||||    
T  26516253 aaatagcttatacataagcacttatatgataagcgctta 26516215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 145
Target Start/End: Original strand, 6738511 - 6738556
Alignment:
Q  100 ttttattatgaaaatagcttatacataagcacttgtatgataagtg 145  Q
    |||||||||  |||||||||||||||||| |||| |||||||||||    
T  6738511 ttttattattgaaatagcttatacataagtacttatatgataagtg 6738556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 140
Target Start/End: Original strand, 7096242 - 7096271
Alignment:
Q  111 aaatagcttatacataagcacttgtatgat 140  Q
    ||||||||||||||||||||||||||||||    
T  7096242 aaatagcttatacataagcacttgtatgat 7096271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 145
Target Start/End: Complemental strand, 10391319 - 10391274
Alignment:
Q  100 ttttattatgaaaatagcttatacataagcacttgtatgataagtg 145  Q
    |||| |||| |||||||||||||| ||||||||| |||||||||||    
T  10391319 ttttgttataaaaatagcttatacgtaagcacttatatgataagtg 10391274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 1191529 - 1191489
Alignment:
Q  110 aaaatagcttatacataagcacttgtatgataagtgcttaa 150  Q
    |||| ||||||||||||||| ||| ||||||||||||||||    
T  1191529 aaaaaagcttatacataagcgcttatatgataagtgcttaa 1191489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 111 - 143
Target Start/End: Original strand, 20982250 - 20982282
Alignment:
Q  111 aaatagcttatacataagcacttgtatgataag 143  Q
    ||||||||||||||||||||||| |||||||||    
T  20982250 aaatagcttatacataagcacttatatgataag 20982282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 110 - 149
Target Start/End: Complemental strand, 28776931 - 28776891
Alignment:
Q  110 aaaatagcttatacataagcacttgt-atgataagtgctta 149  Q
    |||||||||||||||||||||||| | ||||||||||||||    
T  28776931 aaaatagcttatacataagcacttatcatgataagtgctta 28776891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 154
Target Start/End: Complemental strand, 23819061 - 23819002
Alignment:
Q  95 tttatttttattatgaaaatagcttatacataagcacttgtatgataagtgcttaattaa 154  Q
    ||||| ||| ||||| ||||| ||||||||||| |||||||||||||| |||| ||||||    
T  23819061 tttatatttgttatggaaataacttatacataaacacttgtatgataaatgctaaattaa 23819002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 153
Target Start/End: Original strand, 28582023 - 28582066
Alignment:
Q  110 aaaatagcttatacataagcacttgtatgataagtgcttaatta 153  Q
    ||||||| |||||||||| ||||| |||||||||||||||||||    
T  28582023 aaaatagtttatacataaacacttctatgataagtgcttaatta 28582066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 154
Target Start/End: Original strand, 30207693 - 30207728
Alignment:
Q  119 tatacataagcacttgtatgataagtgcttaattaa 154  Q
    ||||||||||||||| ||||||||||||||||||||    
T  30207693 tatacataagcacttatatgataagtgcttaattaa 30207728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 54414903 - 54414866
Alignment:
Q  112 aatagcttatacataagcacttgtatgataagtgctta 149  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  54414903 aatagcttatacataagcacttatatgataagcgctta 54414866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 43932389 - 43932357
Alignment:
Q  110 aaaatagcttatacataagcacttgtatgataa 142  Q
    ||||||| |||||||||||||||||||||||||    
T  43932389 aaaatagtttatacataagcacttgtatgataa 43932357  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 149
Target Start/End: Original strand, 28842971 - 28843010
Alignment:
Q  110 aaaatagcttatacataagcacttgtatgataagtgctta 149  Q
    |||||||||||||||||||||||| ||||||||| |||||    
T  28842971 aaaatagcttatacataagcacttatatgataagcgctta 28843010  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 105 - 147
Target Start/End: Original strand, 16790465 - 16790507
Alignment:
Q  105 ttatgaaaatagcttatacataagcacttgtatgataagtgct 147  Q
    |||| |||||||||||||||||||||||| |||||||| ||||    
T  16790465 ttataaaaatagcttatacataagcacttatatgataaatgct 16790507  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 145
Target Start/End: Original strand, 49772771 - 49772817
Alignment:
Q  99 tttttattatgaaaatagcttatacataagcacttgtatgataagtg 145  Q
    |||||||||  |||||||||||||||||| ||||| |||||||||||    
T  49772771 tttttattacaaaaatagcttatacataaacacttatatgataagtg 49772817  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 144
Target Start/End: Original strand, 33307695 - 33307728
Alignment:
Q  111 aaatagcttatacataagcacttgtatgataagt 144  Q
    ||||||||||||||||||||||| ||||||||||    
T  33307695 aaatagcttatacataagcacttatatgataagt 33307728  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 119 - 155
Target Start/End: Original strand, 5407580 - 5407616
Alignment:
Q  119 tatacataagcacttgtatgataagtgcttaattaaa 155  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  5407580 tatacataagcacttatataataagtgcttaattaaa 5407616  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 111 - 143
Target Start/End: Original strand, 41028966 - 41028998
Alignment:
Q  111 aaatagcttatacataagcacttgtatgataag 143  Q
    ||||||||||||||||||||||| |||||||||    
T  41028966 aaatagcttatacataagcacttatatgataag 41028998  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 158
Target Start/End: Original strand, 17952816 - 17952863
Alignment:
Q  111 aaatagcttatacataagcacttgtatgataagtgcttaattaaattt 158  Q
    |||||||||||| |||||| ||| |||||||||||||| |||||||||    
T  17952816 aaatagcttatatataagctcttatatgataagtgctttattaaattt 17952863  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 154
Target Start/End: Complemental strand, 10150721 - 10150667
Alignment:
Q  100 ttttattatgaaaatagcttatacataagcacttgtatgataagtgcttaattaa 154  Q
    |||||||||  ||||| ||||||||||| ||||| ||| ||||||||||||||||    
T  10150721 ttttattatagaaataacttatacataaacacttatataataagtgcttaattaa 10150667  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 149
Target Start/End: Original strand, 44606192 - 44606241
Alignment:
Q  100 ttttattatgaaaatagcttatacataagcacttgtatgataagtgctta 149  Q
    |||| ||||||||||||||||||||||| ||||| ||| ||||| |||||    
T  44606192 ttttgttatgaaaatagcttatacataaacacttatataataagcgctta 44606241  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 119 - 151
Target Start/End: Complemental strand, 37053541 - 37053509
Alignment:
Q  119 tatacataagcacttgtatgataagtgcttaat 151  Q
    ||||||||||||||| |||||||||||||||||    
T  37053541 tatacataagcacttatatgataagtgcttaat 37053509  T

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Target: scaffold0654 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 111 - 149
Target Start/End: Original strand, 6752 - 6790
Alignment:
Q  111 aaatagcttatacataagcacttgtatgataagtgctta 149  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  6752 aaatagtttatacataagcacttatatgataagtgctta 6790  T

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Target: scaffold0014 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 111 - 149
Target Start/End: Original strand, 116671 - 116709
Alignment:
Q  111 aaatagcttatacataagcacttgtatgataagtgctta 149  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  116671 aaatagtttatacataagcacttatatgataagtgctta 116709  T

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