View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12174_low_9 (Length: 533)
Name: NF12174_low_9
Description: NF12174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12174_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 16 - 481
Target Start/End: Complemental strand, 47502541 - 47502060
Alignment:
| Q |
16 |
tgtgtactatatttgtattgattagtgaagattggggaca------------ttatgattgtgtgtacctgcggcaggtgtaatgcaaacaagaccagtg |
103 |
Q |
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| T |
47502541 |
tgtgtactatatttgtattgattagtgaagattggggacaaagtatgtgacattatgattgtgtgtacctgcggcaggtgtaatgcaaacaagaccagtg |
47502442 |
T |
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| Q |
104 |
atcatgccctgtacggcgccaaacacagtaggcttgccaaagtagaaggtatcaagcatgacccataccatgatgctagcagcagtacacacgtgtgtgt |
203 |
Q |
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| T |
47502441 |
atcatgccctgtacggcgccaaacacagtaggcttgccaaagtagaaggtatcaagcatgacccataccgtgatgctagcagcagtacacacgtgtgtgt |
47502342 |
T |
|
| Q |
204 |
taaggatagcaagagatgcaatggtactagccacaaatggagctccaccgttgaatccactccaacccatccaaagcagtcctgcgcctgcaagcaccat |
303 |
Q |
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| T |
47502341 |
taaggatagcaagagatgcaatggtactagccacaaatggagctccaccgttgaatccactccaacccatccaaagcagtcctgcgcctgcaagcaccat |
47502242 |
T |
|
| Q |
304 |
tatcatgttatttgttgctgctggaaatgtttccctgtccttgtctgctcgaggacccacctattgatcatacaccatcatcacatgcaaaaagtcagtc |
403 |
Q |
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| T |
47502241 |
tatcatgttatttgttgctgctggaaatgtttccctgtccttgtctgctcgaggacccacctattgatcatacaccatcatcacatgcaaaaagtcagtc |
47502142 |
T |
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| Q |
404 |
tttaaaaattaatcaatttaagtacttgttgattttgaaactttaaaataa----cacaagtctataaccacccatattatc |
481 |
Q |
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| T |
47502141 |
tttaaaaattaatcaatttaagtacttgttgattttgaaactttaaaataacacacacaagtctataagcacccatattatc |
47502060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 7963627 - 7963714
Alignment:
| Q |
141 |
caaagtagaaggtatcaagcatgacccataccatgatgctagcagcagtacacacgtgtgtgttaaggatagcaagagatgcaatggt |
228 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||| |
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| T |
7963627 |
caaagtagaaggtatccagcatgacccataccatgatgctagcagcagtacacacgtgtgttgttaggacagcaagagatgcaatggt |
7963714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 33058338 - 33058425
Alignment:
| Q |
141 |
caaagtagaaggtatcaagcatgacccataccatgatgctagcagcagtacacacgtgtgtgttaaggatagcaagagatgcaatggt |
228 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| |||||| |||| |||| | |||| |||||||||| ||||||| |
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| T |
33058338 |
caaagtagaaggtatccagcatgacccataccatgatgctagcagtagtacatacgtttgtggttaggacagcaagagatacaatggt |
33058425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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