View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12175_low_2 (Length: 344)
Name: NF12175_low_2
Description: NF12175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12175_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 30001913 - 30001604
Alignment:
| Q |
1 |
ggttcaagtacttctccaaagaacactgcatcctttttcttctagacacattaaatagtggnnnnnnnatagtgtctcaaacccacatatttaagtgaca |
100 |
Q |
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| T |
30001913 |
ggttcgagtacctctccaaagaacactgcatcctttttattctagacacattaaatagtggttttattatggtgtctcaaacccacatatttaaatgaca |
30001814 |
T |
|
| Q |
101 |
tcatgaatatacaatagtcaatttgggggttaaaaggatggtagaccttgccggagattttctctcaacattacctcatgttccacatttacaagccacc |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
30001813 |
tcatgaatatgcaatagtcaatttgggggttaaaaggatggtagaccttgccggagattttctttcaacattacctcatgatccacatttacaagccacc |
30001714 |
T |
|
| Q |
201 |
ttgtttttgtctttgcttctttaatagaaaaagttcattttaattaactaactaaccagtaacaatccagttttctaaaaagctttcgtgtaaatggaaa |
300 |
Q |
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|||||||||| ||||| ||||||||| ||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30001713 |
ttgtttttgt-tttgcatctttaata-aaaaaaataaaattaattaactaactaaccagtaacaatccagttttctaaaaagctttcgtgtaaatggaaa |
30001616 |
T |
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| Q |
301 |
acttcccaacaa |
312 |
Q |
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|||||||||||| |
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| T |
30001615 |
acttcccaacaa |
30001604 |
T |
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