View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12175_low_3 (Length: 276)
Name: NF12175_low_3
Description: NF12175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12175_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 13 - 257
Target Start/End: Original strand, 10558137 - 10558381
Alignment:
| Q |
13 |
gaagcagagatatggaacaaagtattcgagaaggcagagaagatgacaggcattgaaagaggaagcataagagccacagttttgattgaaacacttcctg |
112 |
Q |
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| T |
10558137 |
gaagcaaagatatggaacaaagtattcgagaaggcagagaagatgacaggcattgaaagaggaagcataagagccacagttttgattgaaacacttcctg |
10558236 |
T |
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| Q |
113 |
cagtgtttcaaatggatgaaattctgtatgagctcagagatcactctgttggtctcaactgtggccgttgggattacattttcagttatgttaagacctt |
212 |
Q |
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| T |
10558237 |
cagtgtttcaaatggatgaaattctgtatgagctcagagatcactctgttggtctcaactgtggccgttgggattacattttcagttatgttaagacctt |
10558336 |
T |
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| Q |
213 |
ccatgctcatccggataggttgctaccggatcgggtccaagttgg |
257 |
Q |
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| T |
10558337 |
ccatgctcatccggataggttgctaccggatcgggtccaagttgg |
10558381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 20 - 149
Target Start/End: Original strand, 10560244 - 10560372
Alignment:
| Q |
20 |
agatatggaacaaagtattcgagaaggcagagaagatgacaggcattgaaagaggaagcataagagccacagttttgattgaaacacttcctgcagtgtt |
119 |
Q |
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|||||||||||||||| || ||||||||||||||| || |||||| | |||||||||||||| ||||| | ||| ||||||||||||||||||||||||| |
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| T |
10560244 |
agatatggaacaaagtgtttgagaaggcagagaagttggcaggcactaaaagaggaagcata-gagccgctgttctgattgaaacacttcctgcagtgtt |
10560342 |
T |
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| Q |
120 |
tcaaatggatgaaattctgtatgagctcag |
149 |
Q |
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| T |
10560343 |
tcaaatggatgaaattttgtatgagctcag |
10560372 |
T |
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