View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12177_high_2 (Length: 288)
Name: NF12177_high_2
Description: NF12177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12177_high_2 |
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| [»] scaffold0432 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 7 - 279
Target Start/End: Original strand, 51999485 - 51999757
Alignment:
| Q |
7 |
caatgtatgttttcttctgttggtcgagtgctgaagaaacatgggatcagtttggtatatctggccaccgacagaaatcactgagagaaaacaaaggttt |
106 |
Q |
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| T |
51999485 |
caatgtatgttttcttctgttggtcaagtgctgaagaaacatgggatcagtttggtatatctggccaccgacagatatcactgagagaaaacaaaggttt |
51999584 |
T |
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| Q |
107 |
atgagaaatagtccctttagtaatgaagctatcactaaaatcccgaggaaacttctcaagtattacctagagaaaactagagagtacatatattctctca |
206 |
Q |
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| T |
51999585 |
atgagaaatagtccctttagtaatgaagctatcattaaaatcccgaggaaacttctcaagtattacctagagaaaactagagagtgcatatattctctca |
51999684 |
T |
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| Q |
207 |
ctaaacatggaacagttggatcttcttgagtcattgatgatgttttctggagtgagtttagaattcacaggtt |
279 |
Q |
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| T |
51999685 |
ctaaacatggaacgattggatcttcttgagtcattgatgatgttttctggagtgagtttagaattcacaggtt |
51999757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 52000074 - 51999821
Alignment:
| Q |
19 |
tcttctgttggtcgagtgctgaagaaacatgggat-cagtttggtatatctggccaccgacagaaatcactgagagaaaacaaaggtttatgagaaatag |
117 |
Q |
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| T |
52000074 |
tcttttgttggtcaactgctgcagaaacgtgggattcagttaggttt--ctagcctccgacagaagtcacaaagataaaacgaaggtttctgagaaatag |
51999977 |
T |
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| Q |
118 |
tccctttagtaatgaagctatcactaaa-atcccgaggaaacttctcaagtattacctagagaaaacta-gagagtacatatattctctcactaaacatg |
215 |
Q |
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| T |
51999976 |
tcccaatattaatgaagctagcattgaagatcctatggaaacttcccaagttttacctagaaaaaacgctgagagtacatctattctctctttaaacacg |
51999877 |
T |
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| Q |
216 |
gaacagttggatcttcttgagtcattgatgatgttttctggagtgagtttagaatt |
271 |
Q |
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| T |
51999876 |
aaataatgggatcttcccgagtcatcgatgacattttctggagttagtttaaaatt |
51999821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 110 - 219
Target Start/End: Complemental strand, 13797 - 13686
Alignment:
| Q |
110 |
agaaatagtccctttagtaatgaagctatcact-aaaatcccgaggaaacttctcaagtattacctagagaaaac-tagagagtacatatattctctcac |
207 |
Q |
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| T |
13797 |
agaaatagtccttttggtaatgaagctagcactcaaaatctcgtgggaaattctcaagtattaccaagagaaaacaaagagaattcatatgttctctcat |
13698 |
T |
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| Q |
208 |
taaacatggaac |
219 |
Q |
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| T |
13697 |
taaacatggaac |
13686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 219
Target Start/End: Original strand, 13173 - 13283
Alignment:
| Q |
110 |
agaaatagtccctttagtaatgaagctatcactaaaatcccgaggaaacttctcaagtattacctagagaaaac-tagagagtacatatattctctcact |
208 |
Q |
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| T |
13173 |
agaaatagtcctttgggtaatgatgctagcactcaaatcccgtgggaaattctcaagtattaccaagagaaaacgaagagaatgcatatgttctctcatt |
13272 |
T |
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| Q |
209 |
aaacatggaac |
219 |
Q |
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| T |
13273 |
aaacatggaac |
13283 |
T |
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