View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12178_low_1 (Length: 571)
Name: NF12178_low_1
Description: NF12178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12178_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 17 - 370
Target Start/End: Complemental strand, 6170002 - 6169654
Alignment:
| Q |
17 |
gtgcgagtgatcatgtagagattagtagtagaaaccctcatccttttttggaacaaaagttgtcgacgaatggatgaaagtgtacacgttacgttggtcg |
116 |
Q |
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| T |
6170002 |
gtgcgagtgatcatgtagagattagtag---aaaccctcatccttttttggaacaaaagttgtcgacgaatgcatgaaagtgtacacgttacattggtcg |
6169906 |
T |
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| Q |
117 |
atttgaaaacaccaacgggacaaatgaggctattgacattgcagaaaatcctatgtttgtaaataataatagcagcagcaacttcatcccattgttccaa |
216 |
Q |
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| T |
6169905 |
atttgaaaacaccaacgggacaaatgaagctattgacattgcagaaaatcctatgtttgtaaataataatagcagcagcaacttcatcccattgttccaa |
6169806 |
T |
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| Q |
217 |
taaaccttccaaattttgtaatgttttctatgtttatcctcaaaaaacaaattccnnnnnnnnnnnnaatacaaacttttgttttcttacgcatgcatct |
316 |
Q |
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| T |
6169805 |
taaaccttccaaattttgtaatgttttctatgtttatcctcaaaaaacaaattcc--atttttttttaatacaaacttttgtattcttacgcatgcatct |
6169708 |
T |
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| Q |
317 |
ccaattttattctatagggcttgaactctctatttataaaaacaatcaactacg |
370 |
Q |
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| T |
6169707 |
ccaattttattctatagggcttgaactctctatttataaaaacaatcaaatacg |
6169654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 367 - 555
Target Start/End: Complemental strand, 6168649 - 6168461
Alignment:
| Q |
367 |
tacgatcacaaacggtttaggtcggaaaaacaatttatgtgagaaatatttaatccacacatagtcataaccttgaaatgttctaggcattcatttacgt |
466 |
Q |
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| T |
6168649 |
tacgattacaaacggtttaggtcggaaaaacaatttatgtgagaaatatttaatccatacatagtcataaccttgaaatgttctaggcattcatttacgt |
6168550 |
T |
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| Q |
467 |
cttcccaatttggaattctcattcaaaatttcattatcctttcttttttaatgatttaaattttcattaaaatcaaccaaacaccatca |
555 |
Q |
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| T |
6168549 |
cttcccaatttagaattctcattcaaaatttcattatcctttcttttttaatgatttaaattttcattaaaatcaaccaaacaccatca |
6168461 |
T |
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