View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12178_low_2 (Length: 414)
Name: NF12178_low_2
Description: NF12178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12178_low_2 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 15 - 385
Target Start/End: Original strand, 42743562 - 42743932
Alignment:
| Q |
15 |
ctgtgagcgtccaaggttccaagttggatacagtgctaggaacaggtcctgaattacctccagaagccacaacaatgatgttgttggcaactgcatggaa |
114 |
Q |
| |
|
||||||||||||||||||||| ||| | ||||||| ||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42743562 |
ctgtgagcgtccaaggttccaggtttgctacagtgttaggagaaggtcctgaatttcctccagcagccacaacaatgatgttgttggcaactgcatggaa |
42743661 |
T |
|
| Q |
115 |
agaccctatggaaatactgctattgtaaaattcaacaggaatatttctacccaaagacactgaaagcacgtcgacaccgtcacttatggcagcttcaaaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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|
| T |
42743662 |
agaccctatggaaatactgctattgtgaaattcaacaggaatatttctacccaaagacactgaaagcacgtcgacaccatcacttattgcagcttcaaaa |
42743761 |
T |
|
| Q |
215 |
ccagccaaaatatctgcatcttgacatccatcgtcccaacaaaccttataggctgcaactcgtgcttttggtgatccaccacttgctgttccatttccat |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42743762 |
ccagccaaaatatctgcatcttgacatccatcgtcccaacaaaccttataggctgcaactcgtgcttttggtgatccaccacttgctgttccatttccat |
42743861 |
T |
|
| Q |
315 |
tgccaaatacacttgcattagcaacgaaatttcctccggcagttgataaagtgtgtgaaccatgaccttca |
385 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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|
| T |
42743862 |
tgccaaatacacttgcattggcaacgaaatttcctccagcagttgataaagtatgtgaaccatgaccttca |
42743932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 15 - 385
Target Start/End: Original strand, 42752921 - 42753291
Alignment:
| Q |
15 |
ctgtgagcgtccaaggttccaagttggatacagtgctaggaacaggtcctgaattacctccagaagccacaacaatgatgttgttggcaactgcatggaa |
114 |
Q |
| |
|
||||||||||||||||||||| ||| | ||||||| ||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
42752921 |
ctgtgagcgtccaaggttccaggtttgctacagtgttaggagaaggtcctgaatttcctccagcagccacaacaatgatgttgttggcaactgcatggaa |
42753020 |
T |
|
| Q |
115 |
agaccctatggaaatactgctattgtaaaattcaacaggaatatttctacccaaagacactgaaagcacgtcgacaccgtcacttatggcagcttcaaaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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|
| T |
42753021 |
agaccctatggaaatactgctattgtgaaattcaacaggaatatttctacccaaagacactgaaagcacgtcgacaccatcacttattgcagcttcaaaa |
42753120 |
T |
|
| Q |
215 |
ccagccaaaatatctgcatcttgacatccatcgtcccaacaaaccttataggctgcaactcgtgcttttggtgatccaccacttgctgttccatttccat |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42753121 |
ccagccaaaatatctgcatcttgacatccatcgtcccaacaaaccttataggctgcaactcgtgcttttggtgatccaccacttgctgttccatttccat |
42753220 |
T |
|
| Q |
315 |
tgccaaatacacttgcattagcaacgaaatttcctccggcagttgataaagtgtgtgaaccatgaccttca |
385 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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|
| T |
42753221 |
tgccaaatacacttgcattggcaacgaaatttcctccagcagttgataaagtatgtgaaccatgaccttca |
42753291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 15 - 395
Target Start/End: Original strand, 42762543 - 42762923
Alignment:
| Q |
15 |
ctgtgagcgtccaaggttccaagttggatacagtgctaggaacaggtcctgaattacctccagaagccacaacaatgatgttgttggcaactgcatggaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
42762543 |
ctgtgagcgtccaaggttccaagttggatacagtactaggaacaggtcctgaattacctccagaagccacaacaatgatgttgttggcaactgcatgaaa |
42762642 |
T |
|
| Q |
115 |
agaccctatggaaatactgctattgtaaaattcaacaggaatatttc---tacccaaagacactgaaagcacgtcgacaccgtcacttatggcagcttca |
211 |
Q |
| |
|
||| ||||||||||||||| | | | || |||| | | | | ||||||||||||| |||||||| || ||||| |||||||||||||||||| |
|
|
| T |
42762643 |
agatcctatggaaatactgttttgggaatattcttgggctaaaccaccactacccaaagacaccgaaagcacatcaacaccatcacttatggcagcttca |
42762742 |
T |
|
| Q |
212 |
aaaccagccaaaatatctgcatcttgacatccatcgtcccaacaaaccttataggctgcaactcgtgcttttggtgatccaccacttgctgttccatttc |
311 |
Q |
| |
|
|||||||||||||| |||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42762743 |
aaaccagccaaaatgtctgcatcataacatccatc---ccaacaaaccttataggctgcaactcgtgcttttggtgatccaccacttgctgttccatttc |
42762839 |
T |
|
| Q |
312 |
cattgccaaatacacttgcattagcaacgaaatttcctccggcagttgataaagtgtgtgaaccatgaccttcactatcccgtg |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42762840 |
cattgccaaatacacttgcattagcaacgaaatttcctccagcagttgataaagtgtgtgaaccatgaccttcactatcccgtg |
42762923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 29 - 381
Target Start/End: Original strand, 42716951 - 42717300
Alignment:
| Q |
29 |
ggttccaagttggatacagtgctaggaacaggtcctgaattacctccagaagccacaacaatgatgttgttggcaactgcatggaaagaccctatggaaa |
128 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||| ||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
42716951 |
ggttccaagttggatacagtactaggagcaggtcctgaatttcctccagcagccacaacaattatgttattggcaactgcatggaaagaccctatggaaa |
42717050 |
T |
|
| Q |
129 |
tactgctattgtaaaattcaacaggaatatttctacccaaagacactgaaagcacgtcgacaccgtcacttatggcagcttcaaaaccagccaaaatatc |
228 |
Q |
| |
|
||||||||| ||||||||||||||||| || | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
42717051 |
tactgctatcgtaaaattcaacaggaaaatcaccacccaaagacactgaaagcacgtcgacaccatcacttatggcagcttcaaaaccagccaaaatatc |
42717150 |
T |
|
| Q |
229 |
tgcatcttgacatccatcgtcccaacaaaccttataggctgcaactcgtgcttttggtgatccaccacttgctgttccatttccattgccaaatacactt |
328 |
Q |
| |
|
|||||| | |||| | ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
42717151 |
tgcatcataacatgaa---tcccaacaaaccttataggctacaactcgtgcttttggcgatccaccacttgctgttccattgccatagccaaatacactt |
42717247 |
T |
|
| Q |
329 |
gcattagcaacgaaatttcctccggcagttgataaagtgtgtgaaccatgacc |
381 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
42717248 |
gcattagcaacaaaatttcctccggcagttgataaagtatgtgtaccatgacc |
42717300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 15 - 387
Target Start/End: Complemental strand, 42734948 - 42734579
Alignment:
| Q |
15 |
ctgtgagcgtccaaggttccaagttggatacagtgctaggaacaggtcctgaattacctccagaagccacaacaatgatgttgttggcaactgcatggaa |
114 |
Q |
| |
|
||||||| |||| ||||||| ||| | ||||||| ||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
42734948 |
ctgtgaggatccacggttccatgtttgctacagtgttagaagaaggtcctgaattacctccagaagccacaacaattatgttgttggcaactgcatggaa |
42734849 |
T |
|
| Q |
115 |
agaccctatggaaatactgctattgtaaaattcaacaggaatatttctacccaaagacactgaaagcacgtcgacaccgtcacttatggcagcttcaaaa |
214 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||| || | || |||||||||||||||||| || ||||| ||||||||||||||||||||| |
|
|
| T |
42734848 |
agaccctatggaaatactgctatcgtgaaattcaacaggaaaatcaccactcaaagacactgaaagcacatcaacaccatcacttatggcagcttcaaaa |
42734749 |
T |
|
| Q |
215 |
ccagccaaaatatctgcatcttgacatccatcgtcccaacaaaccttataggctgcaactcgtgcttttggtgatccaccacttgctgttccatttccat |
314 |
Q |
| |
|
|||||||||||||||||||| | ||| | | | ||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
42734748 |
ccagccaaaatatctgcatcataaca-cgaac--cccaacaaaccttataggcggaaactcgtgcttttggcgatccaccacttgctgttccatttccat |
42734652 |
T |
|
| Q |
315 |
tgccaaatacacttgcattagcaacgaaatttcctccggcagttgataaagtgtgtgaaccatgaccttcact |
387 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||| |||| |
|
|
| T |
42734651 |
agccaaatacacttgcattagcaacaaaatttcctccagcagttgataaagtatgtgaaccatgacctacact |
42734579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 250 - 381
Target Start/End: Original strand, 42769667 - 42769798
Alignment:
| Q |
250 |
ccaacaaaccttataggctgcaactcgtgcttttggtgatccaccacttgctgttccatttccattgccaaatacacttgcattagcaacgaaatttcct |
349 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
42769667 |
ccaacataccttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctaggccattgccaaatacacttgcatttgcaacaaaatttcct |
42769766 |
T |
|
| Q |
350 |
ccggcagttgataaagtgtgtgaaccatgacc |
381 |
Q |
| |
|
|| || ||||||||||| |||||||||||||| |
|
|
| T |
42769767 |
cccgcggttgataaagtatgtgaaccatgacc |
42769798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 101 - 231
Target Start/End: Original strand, 42769506 - 42769633
Alignment:
| Q |
101 |
gcaactgcatggaaagaccctatggaaatactgctattgtaaaattcaacaggaatatttctacccaaagacactgaaagcacgtcgacaccgtcactta |
200 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||| | |||||||| || ||| | | ||||| |||| | |||| ||| || ||||||||| || |
|
|
| T |
42769506 |
gcaactgcatggaaagaccctatagcaatactgctttcataaaattctacgggatca---ccacccacagacgccgaaatcacatcaacaccgtcaagta |
42769602 |
T |
|
| Q |
201 |
tggcagcttcaaaaccagccaaaatatctgc |
231 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| |
|
|
| T |
42769603 |
tggcagcttcgaaaccagccaaaatgtctgc |
42769633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 23 - 381
Target Start/End: Complemental strand, 23040904 - 23040546
Alignment:
| Q |
23 |
gtccaaggttccaagttggatacagtgctaggaacaggtcctgaattacctccagaagccacaacaatgatgttgttggcaactgcatggaaagacccta |
122 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23040904 |
gtccaaggttccaagttggatacagtactaggatcaggtcctgaatttcctccaccagacacaacaatgatgttgttggcaactgcatggaaagacccta |
23040805 |
T |
|
| Q |
123 |
tggaaatactgctattgtaaaattcaacaggaatatttctacccaaagacactgaaagcacgtcgacaccgtcacttatggcagcttcaaaaccagccaa |
222 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| || || ||||| |||||||| |||||||||||||||||||| |
|
|
| T |
23040804 |
tggaaatactgctattgtgaaattcaacaggaaaatttctacccaaagacactgaaagtacatcaacaccatcacttattgcagcttcaaaaccagccaa |
23040705 |
T |
|
| Q |
223 |
aatatctgcatcttgacatccatcgtcccaacaaaccttataggctgcaactcgtgcttttggtgatccaccacttgctgttccatttccattgccaaat |
322 |
Q |
| |
|
|||||||||||| |||||| ||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
23040704 |
aatatctgcatcatgacataaatccccccagcaaaccttataggctgcaactcgagcttttggtgatccaccacttgctgttcctcggccattgccaaat |
23040605 |
T |
|
| Q |
323 |
acacttgcattagcaacgaaatttcctccggcagttgataaagtgtgtgaaccatgacc |
381 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
23040604 |
acactcgcattagcaacgaaatttcctccaacagttgataaagtatgtgaaccatgacc |
23040546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 328
Target Start/End: Complemental strand, 42313973 - 42313818
Alignment:
| Q |
173 |
actgaaagcacgtcgacaccgtcacttatggcagcttcaaaaccagccaaaatatctgcatcttgacatccatcgtcccaacaaaccttataggctgcaa |
272 |
Q |
| |
|
||||| ||||| || |||||||||||||||||||||||||||||||| || | |||||||||| || ||| | | |||||| || || |||||||||| |
|
|
| T |
42313973 |
actgagagcacatcaacaccgtcacttatggcagcttcaaaaccagctaagacatctgcatctgagcagccacctttccaacacactttgtaggctgcaa |
42313874 |
T |
|
| Q |
273 |
ctcgtgcttttggtgatccaccacttgctgttccatttccattgccaaatacactt |
328 |
Q |
| |
|
| | |||||||| || ||||| |||| || ||||| ||||| ||| | |||||| |
|
|
| T |
42313873 |
catgagcttttggagaaccaccttttgcagtgccattaccatttccataaacactt |
42313818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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