View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12178_low_3 (Length: 401)
Name: NF12178_low_3
Description: NF12178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12178_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 26 - 297
Target Start/End: Original strand, 424005 - 424270
Alignment:
| Q |
26 |
caccttattcatcttctaatttagatttagaatcagagtcagaaacagaatcagaagagtcgtcatcgtcgatgctatctgcagaagagtcctgcaacga |
125 |
Q |
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|||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
424005 |
caccttcttcatcttctaattcagatttagaatcagagtcaga------atcagaagagtcgtcatcgtcgatgctatctgcagaagagtcctgcaacga |
424098 |
T |
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| Q |
126 |
acaagcaagcagaagaatgaattaagcatgagtaaagaagtgaatggagaaagtgagtgaagatgtaatagtaatacctcgtcttcggaaatggaatcat |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
424099 |
acaagcaagcagaagaatgaattaagcatgagtaaagaagtgaatggagaaagtgagtgaagatataatagtaatacctcgtcttcggaaatggaatcat |
424198 |
T |
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| Q |
226 |
agtcggaaacttctacactgtcatcggagtcatcgtcgtcggaatcatcatgatcagatggaggcggtggtg |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
424199 |
agtcggaaacttctacactgtcatcggagtcatcgtcgtcggaatcatcatgatcagatggaggcggtggtg |
424270 |
T |
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