View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12178_low_5 (Length: 297)
Name: NF12178_low_5
Description: NF12178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12178_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 156 - 285
Target Start/End: Complemental strand, 24244444 - 24244315
Alignment:
| Q |
156 |
gaatattatggggaagacgcaattgagacattggttgttcggcatcgccgtatattgtccttttgcacatacatcggcagagtgttagccccaatcacct |
255 |
Q |
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| T |
24244444 |
gaatattatggggaagacgcaattgagacattggtttttcggcatcgccgtattttgtccttttgcacatacatcggcagagtgttagcaccaatcacct |
24244345 |
T |
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| Q |
256 |
aaattacagacaaagacaattatgtttgtg |
285 |
Q |
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| T |
24244344 |
aaattacagacaaagacaattatgtttgtg |
24244315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 14 - 129
Target Start/End: Complemental strand, 24244579 - 24244471
Alignment:
| Q |
14 |
agagaagaatacaacgtgtagaacccagaagacagaaattgaattgagaattgagaatggttgaaggttagaattgatatcgatgaagttggaacgatgt |
113 |
Q |
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| T |
24244579 |
agagaagaatacaacgtgtagaacccagaagacagaaattgaattgagaat-------ggttgaaggttagaattgatatcgatgaagttggaacgatgt |
24244487 |
T |
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| Q |
114 |
agttgtgaaaaggtgg |
129 |
Q |
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| T |
24244486 |
agttgtgaaaaggtgg |
24244471 |
T |
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