View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12179_low_1 (Length: 836)

Name: NF12179_low_1
Description: NF12179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12179_low_1
NF12179_low_1
[»] chr8 (3 HSPs)
chr8 (14-818)||(14003254-14004057)
chr8 (14-818)||(5766747-5767553)
chr8 (304-349)||(17627610-17627655)
[»] chr4 (9 HSPs)
chr4 (655-776)||(1481511-1481632)
chr4 (324-455)||(641449-641580)
chr4 (659-774)||(8186539-8186654)
chr4 (270-348)||(547382-547460)
chr4 (252-350)||(55908278-55908376)
chr4 (413-473)||(1601013-1601073)
chr4 (708-770)||(532630-532692)
chr4 (727-781)||(7225324-7225378)
chr4 (327-452)||(3438101-3438226)
[»] chr1 (2 HSPs)
chr1 (270-344)||(19468064-19468138)
chr1 (731-776)||(19467627-19467672)
[»] chr5 (1 HSPs)
chr5 (243-470)||(38266985-38267213)
[»] scaffold0262 (1 HSPs)
scaffold0262 (274-344)||(390-460)
[»] chr2 (1 HSPs)
chr2 (252-350)||(1037214-1037312)


Alignment Details
Target: chr8 (Bit Score: 761; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 761; E-Value: 0
Query Start/End: Original strand, 14 - 818
Target Start/End: Original strand, 14003254 - 14004057
Alignment:
Q  14 tgagatgaagctgctgcagattggggaaaagggcagcaaacatgatgatattttgatcttgtaaacaagtgctagccagaaagagagacttgaattgagg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14003254 tgagatgaagctgctgcagattggggaaaagggcagcaaacatgatgatattttgatcttgtaaacaagtgctagccagaaagagagacttgaattgagg 14003353  T
Q  114 gtttacaagacgatccatcagagaattaggtatggtggttccctggatatttgtgcgattcatattgatctcggtaagtgaaggacagttggtaatgaga 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14003354 gtttacaagacgatccatcagagaattaggtatggtggttccctggatatttgtgcgattcatattgatctcggtaagtgaaggacagttggtaatgaga 14003453  T
Q  214 gcaaagaaagtggaaactctgcgcaagcgacaattaccaaggttgatagagagcagatcaccaagaaacaaagacaactcagcaacacaatgatcattca 313  Q
    |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14003454 gcaaagaaagtggaaactgtgagcaagcgacaattaccaaggttgatagagagcagatcaccaagaaacaaagacaactcagcagcacaatgatcattca 14003553  T
Q  314 aaaaatcagcatattgaagatccaaatgttggatacgtttcgacttagataacaaaaatgagattccagaataagtatatccggggcaatagctgagtac 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14003554 aaaaatcagcatattgaagatccaaatgttggatacgtttcgacttagataacaaaaatgagattccagaataagtatatccggggcaatagctgagtac 14003653  T
Q  414 aagcctcctcaaaggaagactttccattgcaatggaggagaggaattgatctgagatacgaaatcccgtcaaaagaagagaagtcaaatcccttcaaact 513  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  14003654 aagcctcctcaaaggaagactttccattgcaatggaggagaggaattgatctgagatatgaaatcccgtcaaaagaagagaagtc-aatcccttcaaact 14003752  T
Q  514 caacaaggagtcgatgaaatgtgaggtaagatgttccaaaccagtagtaacagtacctgtaatggataaagaagtcaatgttggtttctggcggagagca 613  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  14003753 caacaaggagtcgatgaaatgtgaggtaagatattccaaaccagtagtaacagtacctgtaatggataaagaagtcaatgttggtctctggcggagagca 14003852  T
Q  614 agatcaatgcctgcgacggttaattgttcacatctaagcaagatgacctcttggagaaacttgcagttcttgaacaagtgagaaagcaaagtgccgttga 713  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14003853 agatcaacgcctgcgacggttaattgttcacatctaagcaagatgacatcttggagaaacttgcagttcttgaacaagtgagaaagcaaagtgccgttga 14003952  T
Q  714 ggtagccatgataagagagattaaccttgcggagtttgatgagtgctaatgaaagagcctctagtccagtggagaaggtagcacgtgtgtgattaatgat 813  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14003953 ggtagccatgataagagagattaaccttgcggagtttgatgagtgctaatgaaagagcctctagtccagtggagaaggtagcatgtgtgtgattaatgat 14004052  T
Q  814 tttag 818  Q
    |||||    
T  14004053 tttag 14004057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 738; E-Value: 0
Query Start/End: Original strand, 14 - 818
Target Start/End: Complemental strand, 5767553 - 5766747
Alignment:
Q  14 tgagatgaagctgctgcagattggggaaaagggcagcaaacatgatgatattttgatcttgtaaacaagtg---ctagccagaaagagagacttgaattg 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |   ||||||||||||||||||||||||||    
T  5767553 tgagatgaagctgctgcagattggggaaaagggcagcaaacatgatgatattttgatcttctaaacaagcggcgctagccagaaagagagacttgaattg 5767454  T
Q  111 agggtttacaagacgatccatcagagaattaggtatggtggttccctggatatttgtgcgattcatattgatctcggtaagtgaaggacagttggtaatg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5767453 agggtttacaagacgatccatcagagaattaggtatggtggttccctggatatttgtgcgattcatattgatctcggtaagtgaaggacagttggtaatg 5767354  T
Q  211 agagcaaagaaagtggaaactctgcgcaagcgacaattaccaaggttgatagagagcagatcaccaagaaacaaagacaactcagcaacacaatgatcat 310  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5767353 agagcaaagaaagtggaaactgtgagcaagcgacaattaccaaggttgagagagagcagatcaccaagaaacaaagacaactcagcaacacaatgatcat 5767254  T
Q  311 tcaaaaaatcagcatattgaagatccaaatgttggatacgtttcgacttagataacaaaaatgagattccagaataagtatatccggggcaatagctgag 410  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5767253 tcaaaaaatcagtatattgaagatccaaatgttggatacgtttcgacttagataacaaaaatgagattccagaataagtatatccggggcaatagctgag 5767154  T
Q  411 tacaagcctcctcaaaggaagactttccattgcaatggaggagaggaattgatctgagatacgaaatcccgtcaaaagaagagaagtcaaatcccttcaa 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5767153 tacaagcctcctcaaaggaagactttccattgcaatggaggagagaaattgatctgagatacgaaatcccgtcaaaagaagagaagtc-aatcccttcaa 5767055  T
Q  511 actcaacaaggagtcgatgaaatgtgaggtaagatgttccaaaccagtagtaacagtacctgtaatggataaagaagtcaatgttggtttctggcggaga 610  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  5767054 actcaacaaggagtcgatgaaatgtgaggtaagatgttccaaaccagtagtaacagtacatgtaatggataaagaagtcaatgttggtttctggaggaga 5766955  T
Q  611 gcaagatcaatgcctgcgacggttaattgttcacatctaagcaagatgacctcttggagaaacttgcagttcttgaacaagtgagaaagcaaagtgccgt 710  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5766954 gcaagatcaacgcctgcgatggttaattgttcacatctaagcaagatgacctcttggagaaacttgcagttcttgaacaagtgagaaagcaaagtgccgt 5766855  T
Q  711 tgaggtagccatgataagagagattaaccttgcggagtttgatgagtgctaatgaaagagcctctagtccagtggagaaggtagcacgtgtgtgattaat 810  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5766854 tgaggtagccatgataagagagattaaccttgcggagtttgatgagtgctaatgaaagagcctctagtccagtggagaaggtagcatgtgtgtgattaat 5766755  T
Q  811 gattttag 818  Q
    ||||||||    
T  5766754 gattttag 5766747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 304 - 349
Target Start/End: Complemental strand, 17627655 - 17627610
Alignment:
Q  304 tgatcattcaaaaaatcagcatattgaagatccaaatgttggatac 349  Q
    |||| ||||||||||| |||||| ||||||||||||||||||||||    
T  17627655 tgattattcaaaaaataagcatactgaagatccaaatgttggatac 17627610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 4e-31; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 655 - 776
Target Start/End: Original strand, 1481511 - 1481632
Alignment:
Q  655 gatgacctcttggagaaacttgcagttcttgaacaagtgagaaagcaaagtgccgttgaggtagccatgataagagagattaaccttgcggagtttgatg 754  Q
    |||||||| || |||||||||||||||||||||||| ||| |||||||| || |||||| ||||  ||||| ||||||||||| |||||||||||||| |    
T  1481511 gatgaccttttcgagaaacttgcagttcttgaacaattgaaaaagcaaaatgtcgttgacgtagtaatgatcagagagattaagcttgcggagtttgaag 1481610  T
Q  755 agtgctaatgaaagagcctcta 776  Q
    ||||| ||||||||||||||||    
T  1481611 agtgccaatgaaagagcctcta 1481632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 324 - 455
Target Start/End: Original strand, 641449 - 641580
Alignment:
Q  324 atattgaagatccaaatgttggatacgtttcgacttagataacaaaaatgagattccagaataagtatatccggggcaatagctgagtacaagcctcctc 423  Q
    |||||||||||||| |||||| | || |||   ||| ||||||||| |  ||||||||  ||||||||| |||| ||||| || ||| ||||| ||| ||    
T  641449 atattgaagatccagatgttgtaaacatttactcttggataacaaacacaagattccatcataagtatagccggtgcaattgcagaggacaagtctcgtc 641548  T
Q  424 aaaggaagactttccattgcaatggaggagag 455  Q
    |||||||| | || ||||||||| ||||||||    
T  641549 aaaggaaggcctttcattgcaatagaggagag 641580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 659 - 774
Target Start/End: Complemental strand, 8186654 - 8186539
Alignment:
Q  659 acctcttggagaaacttgcagttcttgaacaagtgagaaagcaaagtgccgttgaggtagccatgataagagagattaaccttgcggagtttgatgagtg 758  Q
    ||||||| ||||  ||| || ||||| ||||||||| |||||||  || ||||||  |||  ||||| ||| |||||||||||||| |||||||  ||||    
T  8186654 acctcttcgagatgcttacaattctttaacaagtgaaaaagcaatttgtcgttgatatagttatgattagatagattaaccttgcgaagtttgaaaagtg 8186555  T
Q  759 ctaatgaaagagcctc 774  Q
    | ||||||||||||||    
T  8186554 ccaatgaaagagcctc 8186539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 270 - 348
Target Start/End: Original strand, 547382 - 547460
Alignment:
Q  270 atcaccaagaaacaaagacaactcagcaacacaatgatcattcaaaaaatcagcatattgaagatccaaatgttggata 348  Q
    ||||||||||||||||||||| |||  ||||   |||| | |||||||| |||||| ||||||||| ||||||||||||    
T  547382 atcaccaagaaacaaagacaagtcaagaacatgttgattagtcaaaaaaacagcattttgaagatctaaatgttggata 547460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 252 - 350
Target Start/End: Complemental strand, 55908376 - 55908278
Alignment:
Q  252 aaggttgatagagagcagatcaccaagaaacaaagacaactcagcaacacaatgatcattcaaaaaatcagcatattgaagatccaaatgttggatacg 350  Q
    |||||| ||||| | || |||||||||||||||||||||||| || |||   |||||||||| |||    |||| |||||||||||||||||| |||||    
T  55908376 aaggtttatagacaccaaatcaccaagaaacaaagacaactctgcgacatcgtgatcattcataaacgtggcattttgaagatccaaatgttgtatacg 55908278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 413 - 473
Target Start/End: Original strand, 1601013 - 1601073
Alignment:
Q  413 caagcctcctcaaaggaagactttccattgcaatggaggagaggaattgatctgagatacg 473  Q
    ||||||||||||||||| || ||||| ||||||| |||||||| || ||||| ||||||||    
T  1601013 caagcctcctcaaaggaggattttcctttgcaatagaggagagcaactgatccgagatacg 1601073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 708 - 770
Target Start/End: Original strand, 532630 - 532692
Alignment:
Q  708 cgttgaggtagccatgataagagagattaaccttgcggagtttgatgagtgctaatgaaagag 770  Q
    |||||| |||| |||||  ||| ||||||||||||||||||||||  |||| |||||||||||    
T  532630 cgttgatgtagtcatgagtagaaagattaaccttgcggagtttgaaaagtgataatgaaagag 532692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 727 - 781
Target Start/End: Complemental strand, 7225378 - 7225324
Alignment:
Q  727 agagagattaaccttgcggagtttgatgagtgctaatgaaagagcctctagtcca 781  Q
    ||||||||||||| | ||||||||||  |||||| ||||||||||||||| ||||    
T  7225378 agagagattaaccctacggagtttgaaaagtgctgatgaaagagcctctactcca 7225324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 327 - 452
Target Start/End: Complemental strand, 3438226 - 3438101
Alignment:
Q  327 ttgaagatccaaatgttggatacgtttcgacttagataacaaaaatgagattccagaataagtatatccggggcaatagctgagtacaagcctcctcaaa 426  Q
    |||||||||||||||||| |||| ||   |||| ||||||| | |  ||||| ||| |||| |||| |||| ||||| |  ||| |||||||| ||||||    
T  3438226 ttgaagatccaaatgttgtatacattgacacttggataacagagaaaagatttcagcataactatagccggtgcaattgtggaggacaagccttctcaaa 3438127  T
Q  427 ggaagactttccattgcaatggagga 452  Q
    ||||||| | | |||||||| |||||    
T  3438126 ggaagacctccaattgcaatagagga 3438101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 270 - 344
Target Start/End: Complemental strand, 19468138 - 19468064
Alignment:
Q  270 atcaccaagaaacaaagacaactcagcaacacaatgatcattcaaaaaatcagcatattgaagatccaaatgttg 344  Q
    ||||||||||||||||||||||| | ||||| | ||||||||||||||  |||||  ||||||||||||||||||    
T  19468138 atcaccaagaaacaaagacaacttatcaacatagtgatcattcaaaaacccagcacgttgaagatccaaatgttg 19468064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 731 - 776
Target Start/End: Complemental strand, 19467672 - 19467627
Alignment:
Q  731 agattaaccttgcggagtttgatgagtgctaatgaaagagcctcta 776  Q
    ||||||||||||||||||||||  ||||| | ||||||||||||||    
T  19467672 agattaaccttgcggagtttgagaagtgcaagtgaaagagcctcta 19467627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 243 - 470
Target Start/End: Complemental strand, 38267213 - 38266985
Alignment:
Q  243 acaattaccaaggttgatagagagcagatcaccaagaaacaaagacaactcagcaacacaatgatcattcaaaaaatcagcatattgaagatccaaatgt 342  Q
    ||||| || |||||| ||||| | ||||| |  |||||||||||||||||| ||||||   |||||| | | ||||||||  | |||||| |||||||||    
T  38267213 acaataactaaggtttatagacaccagatgaggaagaaacaaagacaactcggcaacatggtgatcagtgagaaaatcagtttcttgaaggtccaaatgt 38267114  T
Q  343 tggatacgtttcgacttagataacaaaaatga-gattccagaataagtatatccggggcaatagctgagtacaagcctcctcaaaggaagactttccatt 441  Q
    || ||||||    | |  ||||| |||||  | |||||||||  |||| || |||| |||||| | |||  |||| ||| ||||||||||||||| ||||    
T  38267113 tgtatacgtggacagtaggataaaaaaaagcaagattccagagaaagtgtagccggtgcaatatccgaggccaaggctcgtcaaaggaagactttgcatt 38267014  T
Q  442 gcaatggaggagaggaattgatctgagat 470  Q
    ||||| ||||| ||||| ||||| |||||    
T  38267013 gcaatagaggaaaggaagtgatcggagat 38266985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 274 - 344
Target Start/End: Original strand, 390 - 460
Alignment:
Q  274 ccaagaaacaaagacaactcagcaacacaatgatcattcaaaaaatcagcatattgaagatccaaatgttg 344  Q
    |||||||||||||||||||| ||||||  ||||||||||| |||    |||| ||||||||||||||||||    
T  390 ccaagaaacaaagacaactctgcaacatcatgatcattcataaacatggcattttgaagatccaaatgttg 460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 252 - 350
Target Start/End: Complemental strand, 1037312 - 1037214
Alignment:
Q  252 aaggttgatagagagcagatcaccaagaaacaaagacaactcagcaacacaatgatcattcaaaaaatcagcatattgaagatccaaatgttggatacg 350  Q
    |||||| ||||| | || |||||||||||||||||||||||| || |||   |||||||||| |||    |||| |||||||||||||||||| |||||    
T  1037312 aaggtttatagacaccaaatcaccaagaaacaaagacaactctgcgacatcgtgatcattcataaacgtggcattttgaagatccaaatgttgtatacg 1037214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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