View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12179_low_10 (Length: 251)
Name: NF12179_low_10
Description: NF12179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12179_low_10 |
 | |
|
| [»] chr8 (4 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 5766559 - 5766792
Alignment:
| Q |
18 |
gaaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgacctcacttatttgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5766559 |
gaaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgacctcacttatttgt |
5766658 |
T |
|
| Q |
118 |
tccaaccttatttctcttaatagcactgatatccacctcattgctgatacttttcctttgctagaagaacttgacctcgcttacccctctaaaatcatta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5766659 |
tccaaccttatttctcttaatagcactgatatccacctcattgctgatacttttcctttgctagaagaacttgacctcgcttacccctctaaaatcatta |
5766758 |
T |
|
| Q |
218 |
atcacacacatgctaccttctccactggactaga |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
5766759 |
atcacacacatgctaccttctccactggactaga |
5766792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 14004244 - 14004012
Alignment:
| Q |
19 |
aaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgacctcacttatttgtt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14004244 |
aaactcacatcgctcaatctttccaaccaacccatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgacctcacttatttgtt |
14004145 |
T |
|
| Q |
119 |
ccaaccttatttctcttaatagcactgatatccacctcattgctgatacttttcctttgctagaagaacttgacctcgcttacccctctaaaatcattaa |
218 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14004144 |
ccaaccttaattctcttaatagcactgatctccatctcattgctgattgttttcctttgctagaagaactcgacctcgcttacccctctaaaatcattaa |
14004045 |
T |
|
| Q |
219 |
tcacacacatgctaccttctccactggactaga |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
14004044 |
tcacacacatgctaccttctccactggactaga |
14004012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 17635610 - 17635712
Alignment:
| Q |
18 |
gaaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgacctcacttatttgt |
117 |
Q |
| |
|
|||||||| ||| |||||||| ||||||||||||| | |||| ||||||| || ||||||||||| | ||| ||||||||||||||||| || | |||| |
|
|
| T |
17635610 |
gaaactcatatcactcaatctgtccaaccaactcaccattccaactaatgggttacgagctttctcccggaatattacaactttgacctctctcacttgt |
17635709 |
T |
|
| Q |
118 |
tcc |
120 |
Q |
| |
|
||| |
|
|
| T |
17635710 |
tcc |
17635712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 17642889 - 17642991
Alignment:
| Q |
18 |
gaaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgacctcacttatttgt |
117 |
Q |
| |
|
|||||||||||| |||||||| |||||||| |||| | |||| | ||||| || | ||||||||| ||||| ||||||||||||||||| || | |||| |
|
|
| T |
17642889 |
gaaactcacatcactcaatctctccaaccatctcaccattcccaccaatgggttacaagctttctcccagaatattacaactttgacctctctcacttgt |
17642988 |
T |
|
| Q |
118 |
tcc |
120 |
Q |
| |
|
||| |
|
|
| T |
17642989 |
tcc |
17642991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 7132408 - 7132323
Alignment:
| Q |
17 |
agaaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcagaacattacaactttg |
102 |
Q |
| |
|
|||||||||||||||| | | | |||||||||| || | ||||||| ||||| |||||||||||||| || ||||||||||||||| |
|
|
| T |
7132408 |
agaaactcacatcgcttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttg |
7132323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 7135331 - 7135246
Alignment:
| Q |
17 |
agaaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcagaacattacaactttg |
102 |
Q |
| |
|
|||||||||||||||| | | | |||||||||| || | ||||||| ||||| |||||||||||||| || ||||||||||||||| |
|
|
| T |
7135331 |
agaaactcacatcgcttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttg |
7135246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 7138254 - 7138169
Alignment:
| Q |
17 |
agaaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcagaacattacaactttg |
102 |
Q |
| |
|
|||||||||||||||| | | | |||||||||| || | ||||||| ||||| |||||||||||||| || ||||||||||||||| |
|
|
| T |
7138254 |
agaaactcacatcgcttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttg |
7138169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 8913373 - 8913479
Alignment:
| Q |
17 |
agaaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgacctcacttatttg |
116 |
Q |
| |
|
|||||||||||||||||||| | ||||||||| | | ||||||||||||| |||| || ||| ||| | || ||||||||||||||||| || | ||| |
|
|
| T |
8913373 |
agaaactcacatcgctcaatatctccaaccaatggacctttcctgctaatgggttgctagttttatctaaaaagattacaactttgacctctctcaattg |
8913472 |
T |
|
| Q |
117 |
ttccaac |
123 |
Q |
| |
|
||||||| |
|
|
| T |
8913473 |
ttccaac |
8913479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 188
Target Start/End: Original strand, 8186317 - 8186483
Alignment:
| Q |
22 |
ctcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgacctcacttatttgttcca |
121 |
Q |
| |
|
|||||||| |||||||| || ||| ||| || | ||||||| ||||| ||||||| | |||| | || |||||||||||||||||||| | ||||||| |
|
|
| T |
8186317 |
ctcacatcactcaatctctctaacaaacccaccattcctgcaaatggattgcgagttctctcccgaaatattacaactttgacctcactcacatgttcca |
8186416 |
T |
|
| Q |
122 |
accttatttctcttaatagcactgatatccacctcattgctgatacttttcctttgctagaagaact |
188 |
Q |
| |
|
|| || ||| | ||||||||||| ||| |||||| || ||| ||||||||| ||||||||||| |
|
|
| T |
8186417 |
acattgaatctatcaatagcactgacatcttcctcatcgccgattgttttcctttcctagaagaact |
8186483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 661960 - 661855
Alignment:
| Q |
18 |
gaaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgacctcacttatttgt |
117 |
Q |
| |
|
|||| |||| || |||||||| ||||||||| || | |||| ||||||||||||||||||||||| || | ||||||||||| ||||| || |||||| |
|
|
| T |
661960 |
gaaaatcacgtcactcaatctctccaaccaaaccaccattcccgctaatggtttgcgagctttctcccaatatattacaactttaacctctctcatttgt |
661861 |
T |
|
| Q |
118 |
tccaac |
123 |
Q |
| |
|
| |||| |
|
|
| T |
661860 |
tacaac |
661855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 1481745 - 1481684
Alignment:
| Q |
18 |
gaaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctt |
79 |
Q |
| |
|
||||||||||||||||||| | || |||||||||| |||||| |||||||| |||||||||| |
|
|
| T |
1481745 |
gaaactcacatcgctcaatatctcaaaccaactcaaccttcccgctaatggcttgcgagctt |
1481684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 55907634 - 55907734
Alignment:
| Q |
23 |
tcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgacctcacttatttgttccaa |
122 |
Q |
| |
|
|||| ||||||||||| |||||||||| ||| | || |||| ||| || ||||||||||| || || ||||||||||||| || || ||||||||||| |
|
|
| T |
55907634 |
tcacttcgctcaatctctccaaccaacctatcatccccgctactggcttacgagctttctcccaaaatattacaactttgaattctctcatttgttccaa |
55907733 |
T |
|
| Q |
123 |
c |
123 |
Q |
| |
|
| |
|
|
| T |
55907734 |
c |
55907734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 107
Target Start/End: Complemental strand, 553815 - 553772
Alignment:
| Q |
64 |
aatggtttgcgagctttctctcagaacattacaactttgacctc |
107 |
Q |
| |
|
||||| |||||||||||||| || |||||||||||||||||||| |
|
|
| T |
553815 |
aatgggttgcgagctttctcccaaaacattacaactttgacctc |
553772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 1036570 - 1036670
Alignment:
| Q |
23 |
tcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgacctcacttatttgttccaa |
122 |
Q |
| |
|
|||| ||||||||||| |||||||||| ||| | || |||| ||| || ||||||||||| || || |||||||||||||| || || ||||||||||| |
|
|
| T |
1036570 |
tcacttcgctcaatctctccaaccaacctatcatccccgctactggcttacgagctttctcccaaaatattacaactttgacttctctcatttgttccaa |
1036669 |
T |
|
| Q |
123 |
c |
123 |
Q |
| |
|
| |
|
|
| T |
1036670 |
c |
1036670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 122
Target Start/End: Complemental strand, 7555280 - 7555196
Alignment:
| Q |
38 |
tttccaaccaactcatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgacctcacttatttgttccaa |
122 |
Q |
| |
|
|||||||||||| || | | ||||| | ||| |||||||||||||| || || ||||||||||| |||||||| | ||||||||| |
|
|
| T |
7555280 |
tttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaa |
7555196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 10169003 - 10169106
Alignment:
| Q |
17 |
agaaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgacctcacttatttg |
116 |
Q |
| |
|
||||||||||||| ||| || ||||| ||||| || | |||| || ||||| ||||||| ||||||||| || |||| |||||||||||| || | ||| |
|
|
| T |
10169003 |
agaaactcacatcactcgatatttcctaccaatgcaccattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcacttg |
10169102 |
T |
|
| Q |
117 |
ttcc |
120 |
Q |
| |
|
|||| |
|
|
| T |
10169103 |
ttcc |
10169106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 10176528 - 10176631
Alignment:
| Q |
17 |
agaaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgacctcacttatttg |
116 |
Q |
| |
|
||||||||||||| ||| || ||||| ||||| || | |||| || ||||| ||||||| ||||||||| || |||| |||||||||||| || | ||| |
|
|
| T |
10176528 |
agaaactcacatcactcgatatttcctaccaatgcaccattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcacttg |
10176627 |
T |
|
| Q |
117 |
ttcc |
120 |
Q |
| |
|
|||| |
|
|
| T |
10176628 |
ttcc |
10176631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 10615810 - 10615713
Alignment:
| Q |
23 |
tcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgacctcacttatttgttcc |
120 |
Q |
| |
|
||||||| || ||| |||||||||||| || |||| || ||||| || ||||||||||| || || ||||||||||||||||| || | ||||||| |
|
|
| T |
10615810 |
tcacatcacttaatatttccaaccaacccacagttcccgcaaatgggttacgagctttctcccaaaagattacaactttgacctctctcacttgttcc |
10615713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University