View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12179_low_14 (Length: 230)
Name: NF12179_low_14
Description: NF12179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12179_low_14 |
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| [»] scaffold0590 (1 HSPs) |
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| [»] scaffold1902 (1 HSPs) |
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| [»] scaffold1374 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 35535456 - 35535677
Alignment:
| Q |
1 |
atcggctttttgtaagaacgaagactttgatggagctgtacaagtcttgagggacatgttggaaagattcgtgactcctgattctagtattttatctgaa |
100 |
Q |
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| T |
35535456 |
atcggctttttgtaagaacgaagactttgatggagctgtacaagtcttgagggacatgttggaaagattcatgactcctgattctagtattttatctgaa |
35535555 |
T |
|
| Q |
101 |
gtttatagtggactttgcaggtgtgggaggaagcagtttgcgttgatgttgtgtagtgagattgaagctaagcgtttattgccacaaggttttgacagag |
200 |
Q |
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| T |
35535556 |
gtttatagtggactttgcaggtgtgggaggaagcagtttgcgttgatgttgtgtagtgagattgaagctaagcgtttattgccacaaggttttgacagag |
35535655 |
T |
|
| Q |
201 |
aaaaaatagtcatcacaggttc |
222 |
Q |
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|||||||||||||||| ||||| |
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| T |
35535656 |
aaaaaatagtcatcactggttc |
35535677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0590 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0590
Description:
Target: scaffold0590; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 89 - 201
Target Start/End: Complemental strand, 3147 - 3035
Alignment:
| Q |
89 |
attttatctgaagtttatagtggactttgcaggtgtgggaggaagcagtttgcgttgatgttgtgtagtgagattgaagctaagcgtttattgccacaag |
188 |
Q |
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| T |
3147 |
attttatctgaggtttgaagtagactttgcaggtgtgggagaaaacaatatgcgttgatgttgtgcagtgagatagaagctaagcgtttgttgccacaag |
3048 |
T |
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| Q |
189 |
gttttgacagaga |
201 |
Q |
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| T |
3047 |
gttttgacagaga |
3035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1902 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold1902
Description:
Target: scaffold1902; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 89 - 201
Target Start/End: Original strand, 516 - 628
Alignment:
| Q |
89 |
attttatctgaagtttatagtggactttgcaggtgtgggaggaagcagtttgcgttgatgttgtgtagtgagattgaagctaagcgtttattgccacaag |
188 |
Q |
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||||||||||| |||| ||| ||||||||||||||||||| || || | ||| ||||||||||| |||||||| |||||||||||||| |||||||||| |
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| T |
516 |
attttatctgaggtttgaagtagactttgcaggtgtgggagaaaacaatatgcattgatgttgtgaagtgagatagaagctaagcgtttgttgccacaag |
615 |
T |
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| Q |
189 |
gttttgacagaga |
201 |
Q |
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||||||||||||| |
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| T |
616 |
gttttgacagaga |
628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1374 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold1374
Description:
Target: scaffold1374; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 89 - 201
Target Start/End: Original strand, 697 - 809
Alignment:
| Q |
89 |
attttatctgaagtttatagtggactttgcaggtgtgggaggaagcagtttgcgttgatgttgtgtagtgagattgaagctaagcgtttattgccacaag |
188 |
Q |
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||||||||||| |||| ||| ||||||||||||||||||| || || | ||| ||||||||||| |||||||| |||||||||||||| |||||||||| |
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| T |
697 |
attttatctgaggtttgaagtagactttgcaggtgtgggagaaaacaatatgcattgatgttgtgaagtgagatagaagctaagcgtttgttgccacaag |
796 |
T |
|
| Q |
189 |
gttttgacagaga |
201 |
Q |
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||||||||||||| |
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| T |
797 |
gttttgacagaga |
809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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