View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12179_low_15 (Length: 222)

Name: NF12179_low_15
Description: NF12179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12179_low_15
NF12179_low_15
[»] chr8 (2 HSPs)
chr8 (18-104)||(21566166-21566252)
chr8 (18-113)||(32207856-32207951)
[»] chr2 (8 HSPs)
chr2 (19-113)||(29458508-29458602)
chr2 (18-113)||(3245049-3245144)
chr2 (18-113)||(37777746-37777841)
chr2 (18-113)||(22989114-22989209)
chr2 (18-100)||(40652733-40652815)
chr2 (126-168)||(3245183-3245225)
chr2 (126-168)||(29458631-29458673)
chr2 (126-177)||(40652625-40652677)
[»] scaffold0316 (3 HSPs)
scaffold0316 (18-114)||(5345-5441)
scaffold0316 (170-207)||(5236-5273)
scaffold0316 (126-154)||(5277-5305)
[»] chr3 (9 HSPs)
chr3 (18-114)||(39822055-39822151)
chr3 (18-114)||(34209883-34209980)
chr3 (126-207)||(39821930-39822011)
chr3 (26-108)||(5881692-5881774)
chr3 (18-109)||(10179330-10179420)
chr3 (18-113)||(50516063-50516157)
chr3 (127-177)||(5881574-5881625)
chr3 (170-207)||(34210052-34210089)
chr3 (18-104)||(3744423-3744508)
[»] scaffold0564 (2 HSPs)
scaffold0564 (18-114)||(1864-1961)
scaffold0564 (170-207)||(2033-2070)
[»] chr6 (5 HSPs)
chr6 (26-114)||(32545613-32545701)
chr6 (18-113)||(8643524-8643619)
chr6 (126-168)||(8643443-8643485)
chr6 (18-109)||(16853436-16853526)
chr6 (126-154)||(32545741-32545769)
[»] chr4 (2 HSPs)
chr4 (26-114)||(31555417-31555505)
chr4 (126-207)||(31555545-31555626)
[»] chr7 (4 HSPs)
chr7 (18-94)||(39068596-39068672)
chr7 (126-177)||(39068483-39068535)
chr7 (18-104)||(17026582-17026667)
chr7 (18-100)||(39073276-39073357)
[»] chr1 (4 HSPs)
chr1 (18-113)||(22909436-22909531)
chr1 (26-110)||(42332514-42332599)
chr1 (126-175)||(22909349-22909399)
chr1 (18-109)||(42329365-42329452)
[»] scaffold0061 (2 HSPs)
scaffold0061 (18-94)||(50618-50695)
scaffold0061 (126-177)||(50743-50795)
[»] scaffold0017 (2 HSPs)
scaffold0017 (18-94)||(147939-148016)
scaffold0017 (126-177)||(147839-147891)
[»] chr5 (1 HSPs)
chr5 (138-175)||(37149323-37149360)


Alignment Details
Target: chr8 (Bit Score: 79; Significance: 4e-37; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 21566252 - 21566166
Alignment:
Q  18 attctaacctacactttgcttacatgtcatctcacaaataccccttttctaaattattttctataagcattcaccatgtggctctct 104  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  21566252 attctaacctacactttgcttacatgtcatctcacaaatgccccttttctaaattattttctctaagcattcaccatgtggctctct 21566166  T

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Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 32207856 - 32207951
Alignment:
Q  18 attctaacctacactttgcttacatgtcatctcacaaataccccttttctaaattattttctataagcattcaccatgtggctctctcttttcttt 113  Q
    ||||||||||||||||||||||||||||| ||||| ||| |||| ||||||| | ||||| |||||||||||||||||||||||||||||||||||    
T  32207856 attctaacctacactttgcttacatgtcacctcaccaattccccctttctaactaattttttataagcattcaccatgtggctctctcttttcttt 32207951  T

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Target: chr2 (Bit Score: 79; Significance: 4e-37; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 29458508 - 29458602
Alignment:
Q  19 ttctaacctacactttgcttacatgtcatctcacaaataccccttttctaaattattttctataagcattcaccatgtggctctctcttttcttt 113  Q
    |||||| ||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  29458508 ttctaagctacactttgcttacatgtcacctcacaaatgccccttttctaacttattttctataagcattcaccatgtggctctctcttttcttt 29458602  T

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Target: chr2; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 3245049 - 3245144
Alignment:
Q  18 attctaacctacactttgcttacatgtcatctcacaaataccccttttctaaattattttctataagcattcaccatgtggctctctcttttcttt 113  Q
    ||||||| ||||||||||||||||||||| |||||||||  ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  3245049 attctaaactacactttgcttacatgtcacctcacaaatgtcccttttctaacttattttctttaagcattcaccatgtggctctctcttttcttt 3245144  T

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Target: chr2; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 37777746 - 37777841
Alignment:
Q  18 attctaacctacactttgcttacatgtcatctcacaaataccccttttctaaattattttctataagcattcaccatgtggctctctcttttcttt 113  Q
    ||||||||||||||||||||||||||||| ||||| ||| |||| ||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  37777746 attctaacctacactttgcttacatgtcacctcaccaattccccctttctaactaattttctataagcattcaccatgtggctctctcttttcttt 37777841  T

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Target: chr2; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 22989209 - 22989114
Alignment:
Q  18 attctaacctacactttgcttacatgtcatctcacaaataccccttttctaaattattttctataagcattcaccatgtggctctctcttttcttt 113  Q
    ||||||||||||||||||||||||||||| ||||| ||| |||| ||||||| | |||||||||||||||||| |||||| |||||||||||||||    
T  22989209 attctaacctacactttgcttacatgtcacctcaccaattccccctttctaactaattttctataagcattcagcatgtgactctctcttttcttt 22989114  T

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Target: chr2; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 40652815 - 40652733
Alignment:
Q  18 attctaacctacactttgcttacatgtcatctcacaaataccccttttctaaattattttctataagcattcaccatgtggct 100  Q
    ||||||| ||||||||| ||||||||||| ||||||||| |||||||||||| |||||||||||||||||||| ||| |||||    
T  40652815 attctaagctacactttccttacatgtcacctcacaaatgccccttttctaacttattttctataagcattcaacatatggct 40652733  T

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Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 168
Target Start/End: Original strand, 3245183 - 3245225
Alignment:
Q  126 tattcattcttatatttattatgtaacttgccaattgagcttt 168  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  3245183 tattcattcttatatttattatgtaacttgccaattgagcttt 3245225  T

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Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 168
Target Start/End: Original strand, 29458631 - 29458673
Alignment:
Q  126 tattcattcttatatttattatgtaacttgccaattgagcttt 168  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  29458631 tattcattcttatatttattatgtaacttgccaattgagcttt 29458673  T

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Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 177
Target Start/End: Complemental strand, 40652677 - 40652625
Alignment:
Q  126 tattcattcttatatttattatgtaacttg-ccaattgagctttctaacttcc 177  Q
    |||||||||||||||||||||||||||||| | ||||||||||| ||||||||    
T  40652677 tattcattcttatatttattatgtaacttgtcaaattgagctttgtaacttcc 40652625  T

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Target: scaffold0316 (Bit Score: 77; Significance: 7e-36; HSPs: 3)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 5441 - 5345
Alignment:
Q  18 attctaacctacactttgcttacatgtcatctcacaaataccccttttctaaattattttctataagcattcaccatgtggctctctcttttctttc 114  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||    
T  5441 attctaaactacactttgcttacatgtcatctcacaaatgccccttttctaacttatattctataagtattcaccatgtggctctctcttttctttc 5345  T

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Target: scaffold0316; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 207
Target Start/End: Complemental strand, 5273 - 5236
Alignment:
Q  170 taacttccttcccactatccattcttattcttacgtct 207  Q
    |||||||| |||||||||||||||||||||||||||||    
T  5273 taacttccctcccactatccattcttattcttacgtct 5236  T

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Target: scaffold0316; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 154
Target Start/End: Complemental strand, 5305 - 5277
Alignment:
Q  126 tattcattcttatatttattatgtaactt 154  Q
    |||||||||||||||||||||||||||||    
T  5305 tattcattcttatatttattatgtaactt 5277  T

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Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 39822151 - 39822055
Alignment:
Q  18 attctaacctacactttgcttacatgtcatctcacaaataccccttttctaaattattttctataagcattcaccatgtggctctctcttttctttc 114  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||    
T  39822151 attctaagctacactttgcttacatgtcatctcacaaatgccccttttctaacttatattctataagcattcatcatgtggctctctcttttctttc 39822055  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 34209883 - 34209980
Alignment:
Q  18 attctaacctacactttgcttacatgtcatctcacaaatacccc-ttttctaaattattttctataagcattcaccatgtggctctctcttttctttc 114  Q
    |||||||  |||||||||||||||||||||||||||||| |||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  34209883 attctaaattacactttgcttacatgtcatctcacaaatgcccccttttctaacttatattctataagcattcaccatgtggctctctcttttctttc 34209980  T

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Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 126 - 207
Target Start/End: Complemental strand, 39822011 - 39821930
Alignment:
Q  126 tattcattcttatatttattatgtaacttgccaattgagctttctaacttccttcccactatccattcttattcttacgtct 207  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  39822011 tattcattcttatatttattatataacttgccaattgagctttgtaacttccctcccactatccattcttattcttacgtct 39821930  T

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Target: chr3; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 26 - 108
Target Start/End: Complemental strand, 5881774 - 5881692
Alignment:
Q  26 ctacactttgcttacatgtcatctcacaaataccccttttctaaattattttctataagcattcaccatgtggctctctcttt 108  Q
    |||||||||||||| ||||||||||||||||  || |||||||| |||||||||||||||||||||||||||| | |||||||    
T  5881774 ctacactttgcttatatgtcatctcacaaatgtccattttctaacttattttctataagcattcaccatgtggttttctcttt 5881692  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 10179420 - 10179330
Alignment:
Q  18 attctaacctacactttgcttacatgtcatctcacaaat-accccttttctaaattattttctataagcattcaccatgtggctctctctttt 109  Q
    ||||||| ||||||||||||||||||||| | ||| |||  |||||||||||| | ||||||  ||||||||||||| |||||| ||||||||    
T  10179420 attctaaactacactttgcttacatgtcaccacaccaatgcccccttttctaactaattttc--taagcattcaccaagtggctttctctttt 10179330  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 50516157 - 50516063
Alignment:
Q  18 attctaacctacactttgcttacatgtcatctcacaaatacccct-tttctaaattattttctataagcattcaccatgtggctctctcttttcttt 113  Q
    |||||||  ||||||||||||||||| |||||||| ||| ||||  ||||||| | |||||||| |  | |||||||||||||||||||||||||||    
T  50516157 attctaagatacactttgcttacatggcatctcaccaatgccccgctttctaactaattttctaaa--ctttcaccatgtggctctctcttttcttt 50516063  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 177
Target Start/End: Complemental strand, 5881625 - 5881574
Alignment:
Q  127 attcattcttatatttattatgtaacttgcc-aattgagctttctaacttcc 177  Q
    ||||||||||||||||||||||||||||||| |||||| |||| ||||||||    
T  5881625 attcattcttatatttattatgtaacttgccaaattgaactttgtaacttcc 5881574  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 207
Target Start/End: Original strand, 34210052 - 34210089
Alignment:
Q  170 taacttccttcccactatccattcttattcttacgtct 207  Q
    |||||||| |||||||||||||||||||||||||||||    
T  34210052 taacttccctcccactatccattcttattcttacgtct 34210089  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 3744508 - 3744423
Alignment:
Q  18 attctaacctacactttgcttacatgtcatctcacaaatac-cccttttctaaattattttctataagcattcaccatgtggctctct 104  Q
    ||||||||||||||||||||||  ||||| ||||| ||| | ||| | ||||| | ||||||||  ||||||||||||||||||||||    
T  3744508 attctaacctacactttgcttatgtgtcacctcaccaattctcccctctctaactaattttcta--agcattcaccatgtggctctct 3744423  T

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Target: scaffold0564 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 1864 - 1961
Alignment:
Q  18 attctaacctacactttgcttacatgtcatctcacaaatacccc-ttttctaaattattttctataagcattcaccatgtggctctctcttttctttc 114  Q
    ||||||| ||||||||||||||||||||||||||||||| |||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  1864 attctaaactacactttgcttacatgtcatctcacaaatgcccccttttctaacttatattctataagcattcaccatgtggctctctcttttctttc 1961  T

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Target: scaffold0564; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 207
Target Start/End: Original strand, 2033 - 2070
Alignment:
Q  170 taacttccttcccactatccattcttattcttacgtct 207  Q
    |||||||| |||||||||||||||||||||||||||||    
T  2033 taacttccctcccactatccattcttattcttacgtct 2070  T

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Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 26 - 114
Target Start/End: Original strand, 32545613 - 32545701
Alignment:
Q  26 ctacactttgcttacatgtcatctcacaaataccccttttctaaattattttctataagcattcaccatgtggctctctcttttctttc 114  Q
    |||||||||||||||||||||||| |||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  32545613 ctacactttgcttacatgtcatcttacaaatgccccttttctaacttatattctataagcattcaccatgtggctctctcttttctttc 32545701  T

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Target: chr6; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 8643619 - 8643524
Alignment:
Q  18 attctaacctacactttgcttacatgtcatctcacaaataccccttttctaaattattttctataagcattcaccatgtggctctctcttttcttt 113  Q
    ||||||| ||||| ||||||||||||||| ||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  8643619 attctaagctacattttgcttacatgtcacctcacaaatgccccttttctaatttattttctttaagcattcaccatgtggctctctcttttcttt 8643524  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 168
Target Start/End: Complemental strand, 8643485 - 8643443
Alignment:
Q  126 tattcattcttatatttattatgtaacttgccaattgagcttt 168  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  8643485 tattcattcttatatttattatgtaacttgccaattgagcttt 8643443  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 16853436 - 16853526
Alignment:
Q  18 attctaacctacactttgcttacatgtcatctcacaaatac-cccttttctaaattattttctataagcattcaccatgtggctctctctttt 109  Q
    ||||||| ||||||||||||||||||||| | ||| ||| | || |||||||| | ||||||  ||||||||||||| |||||| ||||||||    
T  16853436 attctaaactacactttgcttacatgtcaccacaccaatgctccattttctaactaattttc--taagcattcaccaagtggctttctctttt 16853526  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 154
Target Start/End: Original strand, 32545741 - 32545769
Alignment:
Q  126 tattcattcttatatttattatgtaactt 154  Q
    |||||||||||||||||||||||||||||    
T  32545741 tattcattcttatatttattatgtaactt 32545769  T

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Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 26 - 114
Target Start/End: Original strand, 31555417 - 31555505
Alignment:
Q  26 ctacactttgcttacatgtcatctcacaaataccccttttctaaattattttctataagcattcaccatgtggctctctcttttctttc 114  Q
    ||||||||||||||||||||||||||||||| || ||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  31555417 ctacactttgcttacatgtcatctcacaaatgcctcttttctaacttatattctataagcattcaccatgtggctctctcttttctttc 31555505  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 126 - 207
Target Start/End: Original strand, 31555545 - 31555626
Alignment:
Q  126 tattcattcttatatttattatgtaacttgccaattgagctttctaacttccttcccactatccattcttattcttacgtct 207  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  31555545 tatttattcttatatttattatgtaacttgccaattgagctttgtaacttccctcccactatccattcttattcttacgtct 31555626  T

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Target: chr7 (Bit Score: 61; Significance: 2e-26; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 39068672 - 39068596
Alignment:
Q  18 attctaacctacactttgcttacatgtcatctcacaaataccccttttctaaattattttctataagcattcaccat 94  Q
    ||||||| |||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  39068672 attctaagctacactttgcttatatgtcacctcacaaataccccttttctaacttattttctataagcattcaccat 39068596  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 177
Target Start/End: Complemental strand, 39068535 - 39068483
Alignment:
Q  126 tattcattcttatatttattatgtaacttgcc-aattgagctttctaacttcc 177  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  39068535 tattcattcttatatttattatgtaacttgccaaattgagctttgtaacttcc 39068483  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 17026582 - 17026667
Alignment:
Q  18 attctaacctacactttgcttacatgtcatctcacaaataccccttt-tctaaattattttctataagcattcaccatgtggctctct 104  Q
    ||||||| ||||||||||||||  ||||| ||||| ||| ||||  | ||||| | ||||||||  ||||||||||||||||||||||    
T  17026582 attctaagctacactttgcttatgtgtcacctcaccaattcccccctctctaactaattttcta--agcattcaccatgtggctctct 17026667  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 39073357 - 39073276
Alignment:
Q  18 attctaacctacactttgcttacatgtcatctca-caaataccccttttctaaattattttctataagcattcaccatgtggct 100  Q
    ||||||||||||||||||||||  ||||| |||| ||| | |||| | ||||| | ||||||  ||||||||||||||||||||    
T  39073357 attctaacctacactttgcttatgtgtcacctcaccaattcccccctctctaactaattttc--taagcattcaccatgtggct 39073276  T

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Target: chr1 (Bit Score: 60; Significance: 9e-26; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 22909531 - 22909436
Alignment:
Q  18 attctaacctacactttgcttacatgtcatctcacaaataccccttttctaaattattttctataagcattcaccatgtggctctctcttttcttt 113  Q
    ||||||| ||||||||||||||||||||| || |||| | | | |||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  22909531 attctaaactacactttgcttacatgtcaccttacaattgctcattttctaacttattttctataaacattcaccatgtggctctctcttttcttt 22909436  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 42332514 - 42332599
Alignment:
Q  26 ctacactttgcttacatgtcatctcacaaatacccct-tttctaaattattttctataagcattcaccatgtggctctctcttttc 110  Q
    |||||||||| ||||||| || ||||| ||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||    
T  42332514 ctacactttggttacatgacacctcaccaatacccctctttctaactaattttctataagcattcaccatgtggctctctcttttc 42332599  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 22909399 - 22909349
Alignment:
Q  126 tattcattcttata-tttattatgtaacttgccaattgagctttctaactt 175  Q
    |||||||||||||| |||||||||||||||| ||||||| |||| ||||||    
T  22909399 tattcattcttataatttattatgtaacttgtcaattgaactttgtaactt 22909349  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 42329365 - 42329452
Alignment:
Q  18 attctaacctacactttgcttacatgtcatctcacaaataccccttttctaaattattttctataagcattcaccatgtggctctctctttt 109  Q
    ||||||| ||||| |||| |||||||||| ||||| ||||||||    |||| | |||||||||||||||||| ||| ||  ||||||||||    
T  42329365 attctaaactacaatttgattacatgtcacctcaccaatacccc----ctaactaattttctataagcattcaacatatgattctctctttt 42329452  T

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Target: scaffold0061 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 50618 - 50695
Alignment:
Q  18 attctaacctacactttgc-ttacatgtcatctcacaaataccccttttctaaattattttctataagcattcaccat 94  Q
    ||||||| ||||||||| | |||||||||| ||||||||| |||||||||||| |||||||||| |||||||||||||    
T  50618 attctaagctacacttttccttacatgtcacctcacaaatgccccttttctaacttattttctacaagcattcaccat 50695  T

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Target: scaffold0061; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 177
Target Start/End: Original strand, 50743 - 50795
Alignment:
Q  126 tattcattcttatatttattatgtaacttgc-caattgagctttctaacttcc 177  Q
    |||||||||||||||||||||||||||||||  ||||||||||| ||||||||    
T  50743 tattcattcttatatttattatgtaacttgcgaaattgagctttgtaacttcc 50795  T

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Target: scaffold0017 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 148016 - 147939
Alignment:
Q  18 attctaacctacactttgc-ttacatgtcatctcacaaataccccttttctaaattattttctataagcattcaccat 94  Q
    ||||||| ||||||||| | |||||||||| ||||||||| |||||||||||| |||||||||| |||||||||||||    
T  148016 attctaagctacacttttccttacatgtcacctcacaaatgccccttttctaacttattttctacaagcattcaccat 147939  T

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Target: scaffold0017; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 177
Target Start/End: Complemental strand, 147891 - 147839
Alignment:
Q  126 tattcattcttatatttattatgtaacttgc-caattgagctttctaacttcc 177  Q
    |||||||||||||||||||||||||||||||  ||||||||||| ||||||||    
T  147891 tattcattcttatatttattatgtaacttgcgaaattgagctttgtaacttcc 147839  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 175
Target Start/End: Complemental strand, 37149360 - 37149323
Alignment:
Q  138 tatttattatgtaacttgccaattgagctttctaactt 175  Q
    |||||||||||||| |||||||||||||||| ||||||    
T  37149360 tatttattatgtaatttgccaattgagctttgtaactt 37149323  T

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