View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12179_low_3 (Length: 493)

Name: NF12179_low_3
Description: NF12179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12179_low_3
NF12179_low_3
[»] chr5 (5 HSPs)
chr5 (159-476)||(43532995-43533312)
chr5 (37-120)||(42063288-42063375)
chr5 (1-121)||(42067792-42067919)
chr5 (46-78)||(20857012-20857044)
chr5 (46-78)||(20857535-20857567)
[»] chr3 (4 HSPs)
chr3 (1-121)||(25107246-25107370)
chr3 (1-121)||(25108366-25108490)
chr3 (1-102)||(23272880-23272980)
chr3 (27-121)||(23276280-23276378)
[»] chr4 (8 HSPs)
chr4 (2-121)||(56015919-56016042)
chr4 (1-102)||(56014781-56014882)
chr4 (32-121)||(41582480-41582573)
chr4 (17-99)||(41583518-41583600)
chr4 (48-118)||(40387503-40387577)
chr4 (32-118)||(40388408-40388498)
chr4 (1-67)||(54434280-54434346)
chr4 (46-121)||(8438314-8438392)
[»] chr8 (5 HSPs)
chr8 (27-119)||(11762973-11763069)
chr8 (1-67)||(20386701-20386767)
chr8 (1-67)||(30711988-30712054)
chr8 (1-67)||(30719765-30719831)
chr8 (38-102)||(11761896-11761960)
[»] chr7 (4 HSPs)
chr7 (1-67)||(5457178-5457244)
chr7 (46-121)||(32688534-32688613)
chr7 (48-121)||(32687430-32687507)
chr7 (1-67)||(20426601-20426667)
[»] chr6 (2 HSPs)
chr6 (11-121)||(26463212-26463326)
chr6 (1-67)||(679957-680023)
[»] chr1 (2 HSPs)
chr1 (1-121)||(34850336-34850460)
chr1 (46-102)||(24905452-24905508)
[»] scaffold0347 (1 HSPs)
scaffold0347 (1-67)||(14536-14602)


Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 159 - 476
Target Start/End: Original strand, 43532995 - 43533312
Alignment:
Q  159 gagttgttgttatagtggaatggcggggggaagaagatgaaataatgggtggcttaggatgtgcggttggaatcggagtgagagttgaaccaaatagttg 258  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43532995 gagttgttgttatagtggaatggcagggggaagaagatgaaataatgggtggcttaggatgtgcggttggaatcggagtgagagttgaaccaaatagttg 43533094  T
Q  259 gcattatcatcatcatctaaaagcgataacagtaacacgttcaggatttccttcttcctcttcttattcttcttactcaaacttcacaactacaaggagg 358  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43533095 gcattatcatcatcatctaaaagcaataacagtaacacgttcgggatttccttcttcctcttcttattcttcttactcaaacttcacaactacaaggagg 43533194  T
Q  359 tttcgtgtcccgcctcacaataatagccaaaatagagaaggagatgttgaggaaggagtttcatcttcatcttcttcttctgaatggattcgtaattcgg 458  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43533195 tttcgtgtcccgcctcacaataatagccaaaatagagaaggagatgttgaggaaggagtttcatcttcatcttcttcttctgaatggattcgtaattcgg 43533294  T
Q  459 gaataatatcttcatgct 476  Q
    ||||||||||||||||||    
T  43533295 gaataatatcttcatgct 43533312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 37 - 120
Target Start/End: Complemental strand, 42063375 - 42063288
Alignment:
Q  37 tgtgatgaaggacgaaatttcaaatgattaacatttacagggacaatttgccaggattagcgatt----agaccaatttttaaatgac 120  Q
    |||||||| |||| |||||| ||||||||||||||| ||||| ||||||||||||||||||||||    |||||||||||||||||||    
T  42063375 tgtgatgagggacaaaattttaaatgattaacatttgcaggggcaatttgccaggattagcgattacagagaccaatttttaaatgac 42063288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 42067792 - 42067919
Alignment:
Q  1 ccacgtcagctaatcagtgatgtggtagtggttaaat---gtgatgaaggacgaaatttcaaatgattaacatttacagggacaatttgccaggattagc 97  Q
    |||| ||||||||||||||| |||| |||| |||| |    |||||||||||||||||| ||||||||||  ||| ||||| || ||||||||||||| |    
T  42067792 ccacatcagctaatcagtgacgtggcagtgattaactttgatgatgaaggacgaaattttaaatgattaaagtttgcaggggcagtttgccaggattatc 42067891  T
Q  98 gatta----gaccaatttttaaatgacc 121  Q
     ||||    |||||| ||||||||||||    
T  42067892 aattacagggaccaaattttaaatgacc 42067919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 78
Target Start/End: Complemental strand, 20857044 - 20857012
Alignment:
Q  46 ggacgaaatttcaaatgattaacatttacaggg 78  Q
    ||||||||||||||||||||||| |||||||||    
T  20857044 ggacgaaatttcaaatgattaacttttacaggg 20857012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 78
Target Start/End: Original strand, 20857535 - 20857567
Alignment:
Q  46 ggacgaaatttcaaatgattaacatttacaggg 78  Q
    ||||||||||||||||||||||| |||||||||    
T  20857535 ggacgaaatttcaaatgattaacttttacaggg 20857567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 25107370 - 25107246
Alignment:
Q  1 ccacgtcagctaatcagtgatgtggtagtggttaaatgtgatgaaggacgaaatttcaaatgattaacatttacagggacaatttgccaggattagcgat 100  Q
    |||||||||||||||| ||| |||| |||| |||| |||||||| ||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||    
T  25107370 ccacgtcagctaatcactgacgtggcagtgattaactgtgatgagggacgaaattttaaatgattaacatttgcaggggcaatttgccaggattagcgat 25107271  T
Q  101 t----agaccaatttttaaatgacc 121  Q
    |    ||||||||||||||||||||    
T  25107270 tagagagaccaatttttaaatgacc 25107246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 25108366 - 25108490
Alignment:
Q  1 ccacgtcagctaatcagtgatgtggtagtggttaaatgtgatgaaggacgaaatttcaaatgattaacatttacagggacaatttgccaggattagcgat 100  Q
    |||||||||||||||||||| |||| |||| |||| |||||||||||||||||||| ||||||||||| ||| |||||||| ||||||||||||||| ||    
T  25108366 ccacgtcagctaatcagtgacgtggcagtgattaactgtgatgaaggacgaaattttaaatgattaacgtttgcagggacagtttgccaggattagcaat 25108465  T
Q  101 ta----gaccaatttttaaatgacc 121  Q
    ||    |||||| ||||||||||||    
T  25108466 tacagggaccaaattttaaatgacc 25108490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 23272980 - 23272880
Alignment:
Q  1 ccacgtcagctaatcagtgatgtggtagtggttaaatgtgatgaaggacgaaatttcaaatgattaacatttacagggacaatttgccaggattagcgat 100  Q
    |||||||| | ||||||||| |||| |||| |||| |||||||| ||||||||| | ||| ||||||| |||  ||||||||||| ||||||||||||||    
T  23272980 ccacgtcatcaaatcagtgacgtggcagtgattaactgtgatgagggacgaaatgttaaa-gattaacgtttgtagggacaattttccaggattagcgat 23272882  T
Q  101 ta 102  Q
    ||    
T  23272881 ta 23272880  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 121
Target Start/End: Original strand, 23276280 - 23276378
Alignment:
Q  27 agtggttaaatgtgatgaaggacgaaatttcaaatgattaacatttacagggacaatttgccaggattagcgatta----gaccaatttttaaatgacc 121  Q
    |||| |||| |||||||| |||| |||||| ||||||||||| |||  ||||  |||||||| |||||||||||||    |||||||||||||||||||    
T  23276280 agtgattaactgtgatgagggacaaaattttaaatgattaacgtttgtaggggtaatttgccgggattagcgattacagggaccaatttttaaatgacc 23276378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 2 - 121
Target Start/End: Original strand, 56015919 - 56016042
Alignment:
Q  2 cacgtcagctaatcagtgatgtggtagtggttaaatgtgatgaaggacgaaatttcaaatgattaacatttacagggacaatttgccaggattagcgatt 101  Q
    ||||||| | ||||||||| |||| |||| |||| |||||||||||||||||||| ||||||||||| ||| ||||||||||||||||  ||||||||||    
T  56015919 cacgtcatcaaatcagtgacgtggcagtgattaactgtgatgaaggacgaaattttaaatgattaacgtttgcagggacaatttgccataattagcgatt 56016018  T
Q  102 a----gaccaatttttaaatgacc 121  Q
    |    |||||||||||||||||||    
T  56016019 atatggaccaatttttaaatgacc 56016042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 56014882 - 56014781
Alignment:
Q  1 ccacgtcagctaatcagtgatgtggtagtggttaaatgtgatgaaggacgaaatttcaaatgattaacatttacagggacaatttgccaggattagcgat 100  Q
    |||||||| | ||||||||| |||| |||| |||| |||||||| ||||||||||| ||||||||||| ||| ||||| |||||||||||||||||||||    
T  56014882 ccacgtcatcaaatcagtgacgtggcagtgattaactgtgatgagggacgaaattttaaatgattaacgtttgcaggggcaatttgccaggattagcgat 56014783  T
Q  101 ta 102  Q
    ||    
T  56014782 ta 56014781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 32 - 121
Target Start/End: Complemental strand, 41582573 - 41582480
Alignment:
Q  32 ttaaatgtgatgaaggacgaaatttcaaatgattaacatttacagggacaatttgccaggattagcgatta----gaccaatttttaaatgacc 121  Q
    |||| |||||||| ||||||||||| ||||||||||| ||| ||||| |||||||||||||||| ||||||    |||||||||||||||||||    
T  41582573 ttaactgtgatgagggacgaaattttaaatgattaacttttgcaggggcaatttgccaggattaacgattagagggaccaatttttaaatgacc 41582480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 41583518 - 41583600
Alignment:
Q  17 gtgatgtggtagtggttaaatgtgatgaaggacgaaatttcaaatgattaacatttacagggacaatttgccaggattagcga 99  Q
    |||| |||| |||| |||| || || || ||||||||||| ||||||||||| ||| ||||| ||||||||||||||||||||    
T  41583518 gtgacgtggcagtgattaagtgagaagagggacgaaattttaaatgattaacttttgcaggggcaatttgccaggattagcga 41583600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 48 - 118
Target Start/End: Complemental strand, 40387577 - 40387503
Alignment:
Q  48 acgaaatttcaaatgattaacatttacagggacaatttgccaggattagcgatta----gaccaatttttaaatg 118  Q
    ||||||||| ||||||||||| ||| ||||| |||||||||||||||||||| ||    ||||||||||||||||    
T  40387577 acgaaattttaaatgattaacttttgcaggggcaatttgccaggattagcgaatacagggaccaatttttaaatg 40387503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 118
Target Start/End: Original strand, 40388408 - 40388498
Alignment:
Q  32 ttaaatgtgatgaaggacgaaatttcaaatgattaacatttacagggacaatttgccaggattagcgatta----gaccaatttttaaatg 118  Q
    |||| |||||| | ||||||||||| ||||||||||| |||   ||| |||||||||||||||||||||||    ||||||||||||||||    
T  40388408 ttaactgtgatcagggacgaaattttaaatgattaacttttgttggggcaatttgccaggattagcgattagagggaccaatttttaaatg 40388498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 54434346 - 54434280
Alignment:
Q  1 ccacgtcagctaatcagtgatgtggtagtggttaaatgtgatgaaggacgaaatttcaaatgattaa 67  Q
    ||||||||||| || ||||| |||| |||| |||| || ||||||||||| ||||| ||||||||||    
T  54434346 ccacgtcagctgattagtgacgtggcagtgattaactgggatgaaggacgtaattttaaatgattaa 54434280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 121
Target Start/End: Complemental strand, 8438392 - 8438314
Alignment:
Q  46 ggacgaaatttcaaatgattaacatttacagggacaatttgccaggattagcgatta---gaccaatttttaaatgacc 121  Q
    ||||||||||| ||||||||||  ||| || |   ||||||||||||||| ||||||   |||||||||||||||||||    
T  8438392 ggacgaaattttaaatgattaaggtttgcaagagtaatttgccaggattaacgattacatgaccaatttttaaatgacc 8438314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 119
Target Start/End: Original strand, 11762973 - 11763069
Alignment:
Q  27 agtggttaaatgtgatgaaggacgaaatttcaaatgattaacatttacagggacaatttgccaggattagcgatta----gaccaatttttaaatga 119  Q
    |||| |||| |||||||| || |||||||| ||||||||||| ||| ||||  ||||||| |||||||||||||||    |||||||||||||||||    
T  11762973 agtgattaactgtgatgaggggcgaaattttaaatgattaacgtttgcaggagcaatttgtcaggattagcgattacaaggaccaatttttaaatga 11763069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 20386701 - 20386767
Alignment:
Q  1 ccacgtcagctaatcagtgatgtggtagtggttaaatgtgatgaaggacgaaatttcaaatgattaa 67  Q
    ||||||||||||||||||||||||| ||| ||||| || | | | ||||||||||| ||||||||||    
T  20386701 ccacgtcagctaatcagtgatgtggcagtagttaactgggctcagggacgaaattttaaatgattaa 20386767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 30711988 - 30712054
Alignment:
Q  1 ccacgtcagctaatcagtgatgtggtagtggttaaatgtgatgaaggacgaaatttcaaatgattaa 67  Q
    ||||||||||||||||||||||||| |||  |||| || | | | ||||||||||| ||||||||||    
T  30711988 ccacgtcagctaatcagtgatgtggcagtaattaactgggttcagggacgaaattttaaatgattaa 30712054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 30719765 - 30719831
Alignment:
Q  1 ccacgtcagctaatcagtgatgtggtagtggttaaatgtgatgaaggacgaaatttcaaatgattaa 67  Q
    ||||||||||||||||||||||||| |||  |||| || | | | ||||||||||| ||||||||||    
T  30719765 ccacgtcagctaatcagtgatgtggcagtaattaactgggttcagggacgaaattttaaatgattaa 30719831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 11761960 - 11761896
Alignment:
Q  38 gtgatgaaggacgaaatttcaaatgattaacatttacagggacaatttgccaggattagcgatta 102  Q
    ||||||| | ||||||||| ||||||||||| ||| ||||| ||||||| || ||||| ||||||    
T  11761960 gtgatgaggtacgaaattttaaatgattaacgtttgcaggggcaatttgacaagattaacgatta 11761896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 5457178 - 5457244
Alignment:
Q  1 ccacgtcagctaatcagtgatgtggtagtggttaaatgtgatgaaggacgaaatttcaaatgattaa 67  Q
    |||||||||||||||||||| |||| |||| |||| || ||||| ||||||||||| ||||||||||    
T  5457178 ccacgtcagctaatcagtgacgtggcagtgattaactgggatgagggacgaaattttaaatgattaa 5457244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 121
Target Start/End: Original strand, 32688534 - 32688613
Alignment:
Q  46 ggacgaaatttcaaatgattaacatttacagggacaatttgccaggattagcgatta----gaccaatttttaaatgacc 121  Q
    ||||||||||| |||||||||| |||| || || ||||||| |||||||||||||||    |||||| ||||||||||||    
T  32688534 ggacgaaattttaaatgattaatatttgcaagggcaatttgtcaggattagcgattacaaggaccaaattttaaatgacc 32688613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 32687507 - 32687430
Alignment:
Q  48 acgaaatttcaaatgattaacatttacagggacaatttgccaggattagcgatta----gaccaatttttaaatgacc 121  Q
    ||||||||| |||||||||| |||| || || |||||||||||||||| ||||||    |||||| ||||||||||||    
T  32687507 acgaaattttaaatgattaatatttgcaagggcaatttgccaggattaacgattacagggaccaaattttaaatgacc 32687430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 20426601 - 20426667
Alignment:
Q  1 ccacgtcagctaatcagtgatgtggtagtggttaaatgtgatgaaggacgaaatttcaaatgattaa 67  Q
    ||||||||||||||| |||| |||| ||||||| | || ||||| |||| |||||| ||||||||||    
T  20426601 ccacgtcagctaatcggtgacgtggcagtggtttagtgggatgagggactaaattttaaatgattaa 20426667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 11 - 121
Target Start/End: Complemental strand, 26463326 - 26463212
Alignment:
Q  11 taatcagtgatgtggtagtggttaaatgtgatgaaggacgaaatttcaaatgattaacatttacagggacaatttgccaggattagcgatta----gacc 106  Q
    |||||||||| |||| |||| |||| || ||||| ||||||||||| ||||||||||  ||| || ||  ||||||||||||||| ||| ||    ||||    
T  26463326 taatcagtgacgtggcagtgattaactgggatgagggacgaaattttaaatgattaaactttgcaagggtaatttgccaggattaacgaatacagggacc 26463227  T
Q  107 aatttttaaatgacc 121  Q
    |||||||||| ||||    
T  26463226 aatttttaaacgacc 26463212  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 680023 - 679957
Alignment:
Q  1 ccacgtcagctaatcagtgatgtggtagtggttaaatgtgatgaaggacgaaatttcaaatgattaa 67  Q
    ||||||||||||||||||||||||| |||  |||| || | | | ||||||||||| ||||||||||    
T  680023 ccacgtcagctaatcagtgatgtggcagtaattaactgggctcatggacgaaattttaaatgattaa 679957  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 34850336 - 34850460
Alignment:
Q  1 ccacgtcagctaatcagtgatgtggtagtggttaaatgtgatgaaggacgaaatttcaaatgattaacatttacagggacaatttgccaggattagcgat 100  Q
    |||||||||||||||||||| |||| |||| |||| || |  || ||| ||||||| ||||||||||  ||| || ||  ||||||| |||||||||||     
T  34850336 ccacgtcagctaatcagtgacgtggcagtgattaagtggggagagggatgaaattttaaatgattaaattttgcaagggtaatttgcaaggattagcgaa 34850435  T
Q  101 ta----gaccaatttttaaatgacc 121  Q
    ||    |||||||||||||| ||||    
T  34850436 tacagggaccaatttttaaacgacc 34850460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 24905452 - 24905508
Alignment:
Q  46 ggacgaaatttcaaatgattaacatttacagggacaatttgccaggattagcgatta 102  Q
    ||||||||||| |||||||||||| || |||||  || |||||||||||||| ||||    
T  24905452 ggacgaaattttaaatgattaacaattgcagggctaaattgccaggattagcaatta 24905508  T

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Target: scaffold0347 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 14536 - 14602
Alignment:
Q  1 ccacgtcagctaatcagtgatgtggtagtggttaaatgtgatgaaggacgaaatttcaaatgattaa 67  Q
    ||||||||||||||||||||||||| |||| |||| || |  || ||||||||| | ||||||||||    
T  14536 ccacgtcagctaatcagtgatgtggcagtgattaagtggggagagggacgaaatcttaaatgattaa 14602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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