View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12179_low_4 (Length: 477)

Name: NF12179_low_4
Description: NF12179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12179_low_4
NF12179_low_4
[»] chr5 (3 HSPs)
chr5 (19-477)||(31287276-31287739)
chr5 (27-207)||(31277855-31278035)
chr5 (168-222)||(31275969-31276023)


Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 19 - 477
Target Start/End: Original strand, 31287276 - 31287739
Alignment:
Q  19 cattggtacattgttgtccagtttcaaaaagtccagcgccttattccatgagcttctttgatagctctcatgatgttgccgtacttttgttgtgtgtttt 118  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||    
T  31287276 cattggtacattgttgtccagtttcaaaaagtccaacaccttattccatgagcttcttcgatagctctcatgatgttgccgtacttttgtcgtgtgcttt 31287375  T
Q  119 tggatcagaacacatcccaaaattgtttccggttcactatttttggtcgtttgaacaatgtagaggcaattattcatcaagaaaacatagcaaaaagcaa 218  Q
    ||||||| ||||| ||| ||||| |||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||| || ||| |||| |     
T  31287376 tggatcataacacctcctaaaatggtttccagttcactatttttcgtcgtttgaacaatgtagagacaattattcatcaagaaaagatggcacaaagtag 31287475  T
Q  219 ggtcataggataacccatctctacattcatccatgtgcatgtatttctaccgctcacttaatct-----agtgatttccacatatatcatatttactctc 313  Q
    ||||||||   |||||||||||||||||||||||||||||||||||||||||||| ||||||||     |||||||||||||||||||||||||||||||    
T  31287476 ggtcatagtgcaacccatctctacattcatccatgtgcatgtatttctaccgctctcttaatctaaacaagtgatttccacatatatcatatttactctc 31287575  T
Q  314 gttttttcctttctttgcgatttcaacgtcttagtgtaacattgtttgacttcccatcttgttgcagatttcattttatttagattcgcatatcaacttc 413  Q
    ||||||||||||||||| |||||| | ||||||||| ||  ||| || ||||||||||||||||||||||||||||||||||||||   |||||||||||    
T  31287576 gttttttcctttctttgtgatttccatgtcttagtgcaatgttgctttacttcccatcttgttgcagatttcattttatttagatttagatatcaacttc 31287675  T
Q  414 gatcaattactgatacaaccaatgacgaggtcgtcaacattgtaaacccaagagcatgagtatt 477  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31287676 gatcaattactgatacaaccaatgacgaggtcgtcaacattgtaaacccaagagcatgagtatt 31287739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 27 - 207
Target Start/End: Original strand, 31277855 - 31278035
Alignment:
Q  27 cattgttgtccagtttcaaaaagtccagcgccttattccatgagcttctttgatagctctcatgatgttgccgtacttttgttgtgtgtttttggatcag 126  Q
    ||||||||||||  |||||| | |||| | | ||| |||||||| || ||| |||| ||| |||||| ||||| |||||||||  || |||||||||||     
T  31277855 cattgttgtccaacttcaaacaatccaacactttactccatgagtttttttcatagttcttatgatgctgccgaacttttgttacgtatttttggatcac 31277954  T
Q  127 aacacatcccaaaattgtttccggttcactatttttggtcgtttgaacaatgtagaggcaattattcatcaagaaaacata 207  Q
    ||||   || ||||| ||| ||  |||||||| ||||||  ||||||| |||||   ||| ||||||||||||||||||||    
T  31277955 aacatcacctaaaatggttcccaattcactatctttggttttttgaaccatgtacctgcagttattcatcaagaaaacata 31278035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 31276023 - 31275969
Alignment:
Q  168 tttgaacaatgtagaggcaattattcatcaagaaaacatagcaaaaagcaaggtc 222  Q
    |||||||||||||   |||||| |||||||||||||||||||| |||||| ||||    
T  31276023 tttgaacaatgtacctgcaattgttcatcaagaaaacatagcacaaagcagggtc 31275969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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