View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12179_low_6 (Length: 367)

Name: NF12179_low_6
Description: NF12179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12179_low_6
NF12179_low_6
[»] chr1 (4 HSPs)
chr1 (11-358)||(11780083-11780431)
chr1 (133-305)||(10424593-10424765)
chr1 (135-348)||(1624795-1625008)
chr1 (222-281)||(30731478-30731537)
[»] chr7 (1 HSPs)
chr7 (16-358)||(17158499-17158845)
[»] chr2 (1 HSPs)
chr2 (16-353)||(12101765-12102100)
[»] chr6 (4 HSPs)
chr6 (19-358)||(14977507-14977849)
chr6 (19-190)||(11776308-11776482)
chr6 (134-190)||(9352421-9352477)
chr6 (142-190)||(24353638-24353686)
[»] chr5 (4 HSPs)
chr5 (19-348)||(5781859-5782191)
chr5 (19-348)||(19069377-19069709)
chr5 (196-293)||(17763963-17764060)
chr5 (133-190)||(11724701-11724758)
[»] chr3 (6 HSPs)
chr3 (133-300)||(16311632-16311799)
chr3 (133-300)||(18488416-18488583)
chr3 (133-300)||(18492626-18492793)
chr3 (122-285)||(19829018-19829181)
chr3 (133-271)||(16314023-16314161)
chr3 (133-271)||(18495017-18495155)
[»] chr8 (1 HSPs)
chr8 (133-289)||(17459431-17459587)


Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 11 - 358
Target Start/End: Complemental strand, 11780431 - 11780083
Alignment:
Q  11 ggacatcattgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctactagctacgccagtgtttgaaat 110  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  11780431 ggacatcattgtcgtcaacatctttcagctttccactacataacgtgtttgacagcgtttctagtgaggagctgctactagctacgccagtgtttgaaat 11780332  T
Q  111 tgtttcccgg-ttgcatgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttac 209  Q
    |||||||| | |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11780331 tgtttccccgattgcatgatgaaatgcattctgagagagtgaagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttac 11780232  T
Q  210 tccaacgctctcggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatcaatt 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11780231 tccaacgctctcggatgatgtggaacataatcattcgcgcccacaggagctggtggagagtccgaagggtgcccatgagcatgtaccacattcatcaatt 11780132  T
Q  310 gttgagcaagatgatgtgcatgaggtatctgtggaatcgccacaggttc 358  Q
    |||||||| |||||||| ||||||||||||  |||||||||||||||||    
T  11780131 gttgagcacgatgatgtacatgaggtatctaaggaatcgccacaggttc 11780083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 133 - 305
Target Start/End: Complemental strand, 10424765 - 10424593
Alignment:
Q  133 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 232  Q
    |||||||||||||||||||| || | ||||| ||||||||||||||  ||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  10424765 gtgcattctgagagagtggaacaattgcatctgacatcgcgggaggtattggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 10424666  T
Q  233 aacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatc 305  Q
    || |||||| ||||||||||| ||| |||||||||||||| |||||| || | |||| |||||||||||||||    
T  10424665 aatataatcgttcgcgcccacgggagctggtggagagtcctaagggttcctacgagcgtgtaccacattcatc 10424593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 135 - 348
Target Start/End: Complemental strand, 1625008 - 1624795
Alignment:
Q  135 gcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtggaa 234  Q
    ||||| ||||||||| || |||| ||||| |||||||||||||| ||||| |||||     || || ||||| |||   ||||| |  ||||||||||||    
T  1625008 gcattttgagagagtagaacagttgcatctgacatcgcgggaggtgttggggaaccccacggtggatgatgtcactgttacgctttatgatgatgtggaa 1624909  T
Q  235 cataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatcaattgttgagcaagatgatgtgcatgagg 334  Q
    || |||  |||| |||| | ||| ||||| |||||||| |||||| |||| |||| |||||||||||||||   | |||||||   ||| ||||||||||    
T  1624908 cacaatagttcgagcccgcgggagctggtcgagagtcccaagggttcccacgagcgtgtaccacattcatcccctattgagcacattgaggtgcatgagg 1624809  T
Q  335 tatctgtggaatcg 348  Q
    | ||||| ||||||    
T  1624808 tgtctgtagaatcg 1624795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 281
Target Start/End: Original strand, 30731478 - 30731537
Alignment:
Q  222 ggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgc 281  Q
    ||||| |||||||||| |||||  | |||||||||| |||||||||||||| ||||||||    
T  30731478 ggatggtgtggaacatgatcatgtgagcccacaggagctggtggagagtcccaagggtgc 30731537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 358
Target Start/End: Complemental strand, 17158845 - 17158499
Alignment:
Q  16 tcattgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctactagctacgccagtgtttgaaattgttt 115  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||  |||||| ||| |||||||||||||||||||||||||    
T  17158845 tcattgtcgtcaacacctttcagctttccactacataacgtgtttgacaacatttctagtgaaaagctgccactcgctacgccagtgtttgaaattgttt 17158746  T
Q  116 cccggtt---gcatgatgaagtgcattctgagagagt-ggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactc 211  Q
    ||  |||   ||| ||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||     
T  17158745 cctagtttgcgcacgatgaagtgcattctgagagagtgggatcagtcgcatccgatatcgcgggaggagttggagaaccctgtggttgacgatgttactg 17158646  T
Q  212 caacgctctcggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatcaattgt 311  Q
    | || ||||||||||||||||| ||||||||||||| |||  || |  ||||||||||||| ||||| | |||||||||||||| |||||||||||||||    
T  17158645 cgacactctcggatgatgtggagcataatcattcgcacccctagtagttggtggagagtcccaagggggaccatgagcatgtactacattcatcaattgt 17158546  T
Q  312 tgagcaagatgatgtgcatgaggtatctgtggaatcgccacaggttc 358  Q
    | ||||  |||| ||||||||||||||| ||||||||||||||||||    
T  17158545 taagcacaatgacgtgcatgaggtatctctggaatcgccacaggttc 17158499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 16 - 353
Target Start/End: Original strand, 12101765 - 12102100
Alignment:
Q  16 tcattgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctactagctacgccagtgtttgaaattgttt 115  Q
    |||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||| |||||||| | || ||| || | ||||||||||||| |||    
T  12101765 tcattgtcgtcaacatctttcagctttccactacataacgtgtttaacaatatttctagcgaggagctaccacaagcaacacgagtgtttgaaattattt 12101864  T
Q  116 cccggtt---gcatgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactcc 212  Q
    |||   |   ||| ||||| |||||| ||||||||| ||||||  | ||| |||||||||||||||||||||||||||   | | ||||||||||||| |    
T  12101865 ccccaattgtgcacgatgacgtgcatcctgagagagcggagcaaacacattcgacatcgcgggaggagttggagaaccccatggctgacgatgttactac 12101964  T
Q  213 aacgctctcggatgatgtggaacata----atcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatcaat 308  Q
     |  |         ||||||||||||    ||||||||||||| | ||| |||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  12101965 gatac---------atgtggaacatatataatcattcgcgcccccgggagctggtggagagtcccaagggtgcctatgagcatgtaccacattcatcaat 12102055  T
Q  309 tgttgagcaagatgatgtgcatgaggtatctgtggaatcgccaca 353  Q
    ||||||||| ||||| ||||||||||| |||||||||||| ||||    
T  12102056 tgttgagcacgatgacgtgcatgaggtttctgtggaatcgacaca 12102100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 112; Significance: 1e-56; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 19 - 358
Target Start/End: Original strand, 14977507 - 14977849
Alignment:
Q  19 ttgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctactagctacgccagtgtttgaaattgtttccc 118  Q
    ||||| ||||||||||| ||||| ||| | || ||| ||||||| |  |||||||||||| || ||| |  |||||| |||||| ||||  |||| ||||    
T  14977507 ttgtcatcaacatcttttagcttcccattacacaacatgtttgatagtatttctagtgagaagttgccagaagctacaccagtgattgagtttgtgtccc 14977606  T
Q  119 g-gttgc--atgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaac 215  Q
      |||||  | ||||| |||||||| ||||||||||||||||||||||||||||||||||||||| || ||| ||     ||||||||||||||| | ||    
T  14977607 cagttgcgcacgatgacgtgcattccgagagagtggagcagtcgcatccgacatcgcgggaggaggtgcagatcccaacggttgacgatgttactgctac 14977706  T
Q  216 gctctcggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatcaattgttgag 315  Q
    ||| ||  |||||||||||||||||||||||  ||| | ||| |||||||||||||| |||||| ||||||||||||| ||||||||||| |||||| ||    
T  14977707 gctatcttatgatgtggaacataatcattcgaccccgcgggagctggtggagagtcccaagggttcccatgagcatgttccacattcatccattgtttag 14977806  T
Q  316 caagatgatgtgcatgaggtatctgtggaatcgccacaggttc 358  Q
    || |||||  ||||||| |||||||||||||||  ||||||||    
T  14977807 catgatgacatgcatgatgtatctgtggaatcgatacaggttc 14977849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 11776482 - 11776308
Alignment:
Q  19 ttgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctactagctacgccagtgtttgaaattgtttccc 118  Q
    ||||||||||  ||||||||||||||| | ||||| | ||||||||| ||||||  ||||||| ||| ||  | ||| |||||||| ||  |||||||||    
T  11776482 ttgtcgtcaaactctttcagctttccattacataatgcgtttgacaaaatttctcatgaggagttgccacatgttacaccagtgttagaggttgtttccc 11776383  T
Q  119 g-gttg--catgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaacc 190  Q
      ||||  || ||||| ||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||    
T  11776382 ctgttgtgcacgatgatgtgcattctgagagagtggagcagttgcatcagtcatcgcgggaggagttggagaacc 11776308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 190
Target Start/End: Complemental strand, 9352477 - 9352421
Alignment:
Q  134 tgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaacc 190  Q
    ||||||||||||||||||| |||| || || ||||||||| |||| |||||||||||    
T  9352477 tgcattctgagagagtggaacagttgcgtctgacatcgcgagaggtgttggagaacc 9352421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 24353686 - 24353638
Alignment:
Q  142 gagagagtggagcagtcgcatccgacatcgcgggaggagttggagaacc 190  Q
    ||||||| | |||||| ||||| ||||||||||||||||||||||||||    
T  24353686 gagagagcgaagcagttgcatcagacatcgcgggaggagttggagaacc 24353638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 348
Target Start/End: Complemental strand, 5782191 - 5781859
Alignment:
Q  19 ttgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctactagctacgccagtgtttgaaattgtttccc 118  Q
    ||||||||||  ||||||||||||||| | || || |||||  | |  ||||||  ||||||||||| |   |||||||||||||| ||  |||||||||    
T  5782191 ttgtcgtcaaactctttcagctttccattacacaatgtgttcaatagaatttctcctgaggagctgccatgtgctacgccagtgttagaggttgtttccc 5782092  T
Q  119 g-gttgc--atgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaac 215  Q
      |||||  | ||||| |||||||||||||||| |||||||| ||||| |||||||||| ||||||||||||||||    || || |||||||||   ||    
T  5782091 ttgttgcgcacgatgacgtgcattctgagagagaggagcagttgcatcagacatcgcggaaggagttggagaaccacacggtggatgatgttactgttac 5781992  T
Q  216 gctctcggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatcaattgttgag 315  Q
     || || |||||||||||||| |||||||||  ||| | ||| |||||||||||||| |||||| ||||||||| |||| ||| ||||||  || |||||    
T  5781991 actttctgatgatgtggaacacaatcattcgatcccgcgggagctggtggagagtcccaagggttcccatgagcgtgtatcacgttcatcccttattgag 5781892  T
Q  316 caagatgatgtgcatgaggtatctgtggaatcg 348  Q
    ||   ||| ||||||||||||||||| ||||||    
T  5781891 cattttgaggtgcatgaggtatctgtagaatcg 5781859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 348
Target Start/End: Complemental strand, 19069709 - 19069377
Alignment:
Q  19 ttgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctactagctacgccagtgtttgaaattgtttccc 118  Q
    ||||||||||  ||||||||||||||| | || || | ||||||||| ||||||  | ||||||||| ||  |||||||||||||| ||  || ||||||    
T  19069709 ttgtcgtcaaactctttcagctttccattacacaatgcgtttgacaaaatttctcctaaggagctgccacgtgctacgccagtgttagaggttatttccc 19069610  T
Q  119 g-gttgc--atgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaac 215  Q
      |||||  | ||||| |||||||||||||||| ||||| || ||||| ||||||||| ||||||||||||||||     || || |||||||||   ||    
T  19069609 ctgttgcgcacgatgacgtgcattctgagagagaggagcggttgcatcagacatcgcgagaggagttggagaaccccacggtggaagatgttactgttac 19069510  T
Q  216 gctctcggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatcaattgttgag 315  Q
     || ||  ||||||||||||| |||||||||  ||| ||||| |||||||||||||| ||||||  |||||||| | || ||||||||||   | |||||    
T  19069509 cctttctaatgatgtggaacacaatcattcgatcccgcaggagctggtggagagtcccaagggtttccatgagcgtatatcacattcatcccctattgag 19069410  T
Q  316 caagatgatgtgcatgaggtatctgtggaatcg 348  Q
    ||   ||| ||||||||||| ||||| ||||||    
T  19069409 cattttgaggtgcatgaggtgtctgtagaatcg 19069377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 293
Target Start/End: Original strand, 17763963 - 17764060
Alignment:
Q  196 gttgacgatgttactccaacgctctcggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgt 293  Q
    ||||| ||||||||| | ||||| || ||||||||||||||||||||||   ||   | ||| |||||||||||||  |||||| |||||||||||||    
T  17763963 gttgatgatgttactgctacgctttctgatgatgtggaacataatcatttaagctggcgggagctggtggagagtctcaagggttcccatgagcatgt 17764060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 11724701 - 11724758
Alignment:
Q  133 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaacc 190  Q
    ||||||||| ||||||  ||||| | ||||| |||||||||||||| |||||||||||    
T  11724701 gtgcattctaagagagcagagcaattgcatctgacatcgcgggaggtgttggagaacc 11724758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 133 - 300
Target Start/End: Original strand, 16311632 - 16311799
Alignment:
Q  133 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 232  Q
    ||||||| ||||| |||||| || | ||||| |||||||||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  16311632 gtgcattttgagaaagtggaacaattgcatctgacatcgcgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 16311731  T
Q  233 aacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacat 300  Q
    || |||||| ||||||||||| ||| |||||||||||||| |||||| || | |||| |||| |||||    
T  16311732 aatataatcgttcgcgcccacgggagctggtggagagtcccaagggttcctacgagcgtgtatcacat 16311799  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 133 - 300
Target Start/End: Original strand, 18488416 - 18488583
Alignment:
Q  133 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 232  Q
    ||||||| ||||| |||||| || | ||||| |||||||||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  18488416 gtgcattttgagaaagtggaacaattgcatctgacatcgcgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 18488515  T
Q  233 aacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacat 300  Q
    || |||||| ||||||||||| ||| |||||||||||||| |||||| || | |||| |||| |||||    
T  18488516 aatataatcgttcgcgcccacgggagctggtggagagtcccaagggttcctacgagcgtgtatcacat 18488583  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 133 - 300
Target Start/End: Original strand, 18492626 - 18492793
Alignment:
Q  133 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 232  Q
    ||||||| ||||| |||||| || | ||||| |||||||||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  18492626 gtgcattttgagaaagtggaacaattgcatctgacatcgcgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 18492725  T
Q  233 aacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacat 300  Q
    || |||||| ||||||||||| ||| |||||||||||||| |||||| || | |||| |||| |||||    
T  18492726 aatataatcgttcgcgcccacgggagctggtggagagtcccaagggttcctacgagcgtgtatcacat 18492793  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 122 - 285
Target Start/End: Complemental strand, 19829181 - 19829018
Alignment:
Q  122 tgcatgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctc 221  Q
    |||| ||||| |||||||||||||||| ||||| || ||| | |||||| | || ||||||||||||||    |||  |||||||||||   || || ||    
T  19829181 tgcacgatgacgtgcattctgagagagaggagcggttgcaccagacatcacagggggagttggagaaccccacagtgaacgatgttactgttacactttc 19829082  T
Q  222 ggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccat 285  Q
     |||||||||||||| |||||||||  ||| | ||| |||||||||||||| |||||| |||||    
T  19829081 tgatgatgtggaacacaatcattcgaacccgcgggagctggtggagagtcccaagggttcccat 19829018  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 271
Target Start/End: Original strand, 16314023 - 16314161
Alignment:
Q  133 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 232  Q
    ||||||| ||||| |||||| || | ||||| |||||| ||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  16314023 gtgcattttgagaaagtggaacaattgcatctgacatcacgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 16314122  T
Q  233 aacataatcattcgcgcccacaggatctggtggagagtc 271  Q
    || |||||| ||||||||||| ||| |||||||||||||    
T  16314123 aatataatcgttcgcgcccacgggagctggtggagagtc 16314161  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 271
Target Start/End: Original strand, 18495017 - 18495155
Alignment:
Q  133 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 232  Q
    ||||||| ||||| |||||| || | ||||| |||||| ||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  18495017 gtgcattttgagaaagtggaacaattgcatctgacatcacgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 18495116  T
Q  233 aacataatcattcgcgcccacaggatctggtggagagtc 271  Q
    || |||||| ||||||||||| ||| |||||||||||||    
T  18495117 aatataatcgttcgcgcccacgggagctggtggagagtc 18495155  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 289
Target Start/End: Original strand, 17459431 - 17459587
Alignment:
Q  133 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 232  Q
    |||||||| |||||||  ||||| | ||||||||||||||||||  ||||||||||||   |||| |||||||| |||   ||||| ||  |||||||||    
T  17459431 gtgcattccgagagagcagagcaattgcatccgacatcgcgggaaaagttggagaaccccatagtggacgatgtcactgttacgctttctaatgatgtgg 17459530  T
Q  233 aacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagc 289  Q
    |||| ||||||||| |||| | |||  ||||||||||||  || ||| |||||||||    
T  17459531 aacacaatcattcgagcccgcgggagatggtggagagtctcaacggtccccatgagc 17459587  T

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