View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12179_low_8 (Length: 299)
Name: NF12179_low_8
Description: NF12179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12179_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 490401 - 490122
Alignment:
| Q |
1 |
actaaaaagcaaaattatccaaatccaaataagggataaataaaaagccccttaacttgaacattgttcattatnnnnnnnnnnnnnnnnnnnnntcata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
490401 |
actaaaaagcaaaattatccaaatccaaataagggataaataaaaagccccttaacttgaacattgttcaatataaaaaacaaaagaaaagaaaatcata |
490302 |
T |
|
| Q |
101 |
agtttgaaagtttcaataatcttcatcctatgctcagaatatatactgaacaaaggaccattttgaagaagtaggccatggtatttgaatcacaaccatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
490301 |
agtttgaaagtttcaataatcttcatcctatgctcagaatatatactgaacaaaggaccattttgaagaactaggccatggtacttgaatcacaaccatg |
490202 |
T |
|
| Q |
201 |
aactctttatattcaaaatcaacttctttgccatcaattccacaagcccttggtttctctgaagcatagaccctcatctc |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
490201 |
aactctttatattcaaaatcaacttctttgccatcaattccacaagcccttggtttctctgaagcatagaccctcatctc |
490122 |
T |
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