View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12179_low_9 (Length: 280)
Name: NF12179_low_9
Description: NF12179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12179_low_9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 7150430 - 7150708
Alignment:
| Q |
1 |
ctacataaccttcaaaccc-atctgaggttgctccaatacacatcacgagtatgttctcgcaggcgccaccaccttttggtggaggatggcttgcataaa |
99 |
Q |
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| T |
7150430 |
ctacataaccttcaaaccccatctgaggttgctccaatacacatcacgagtctgttctcgcaggcgccaccaccttttggtggaggatggcttgcataaa |
7150529 |
T |
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| Q |
100 |
tctctaatatgctccatgtttcgttgcttgatggttttaggtcctaggcctgtacttgaattcaaaggtttaattgaggtattatgatttgatgctttgg |
199 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7150530 |
tctctaatttgctccatgtttcgttgcttgatggttttaggtcctaggcatgtacttgaattcaaaggtttaattgaggtattatgatttgatgctttgg |
7150629 |
T |
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| Q |
200 |
cttaggttgtgaatgttgtttccgtggtgatctttttgtgggtgttttggttgtctgcactgaagagtacttttgtttctt |
280 |
Q |
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||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
7150630 |
cttaggttgtgga--ttgtttccgtggtgatctttttgtgggtgttttggttgtctgcactgaagagcatttttgtttctt |
7150708 |
T |
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