View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12180_high_8 (Length: 373)
Name: NF12180_high_8
Description: NF12180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12180_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 15 - 352
Target Start/End: Original strand, 42799671 - 42800011
Alignment:
| Q |
15 |
gtgttctgaattgttattttggttctcaacaaatagag--tagtttctattaaacaaggaatgggttgctacacaaaatgggacgatgcaagaacgttta |
112 |
Q |
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| T |
42799671 |
gtgttctgaattgttattttggttctcaacaaatagagagtagtttctattaaacaaggaatgggttgctacacaaaatgggacgatgcaagaacgttta |
42799770 |
T |
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| Q |
113 |
aatgttgtgagctactacatggcctaggggaacatttgaagcaaacagatggggtgcataagtacttaattcgtgatttggt-nnnnnnnnnngtactta |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42799771 |
aatgttgtgagctactacatggcctaggggaacatttgaagcaacaagatggggtgcataagtacttaattcgtgatttggtaaaaaaaaaaagtactta |
42799870 |
T |
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| Q |
212 |
attcgtgtaaaagaataaactcttggaagtcttgcagaaaatgcctcttggttttccgttgattgttttgtaacatttctcgatcaattaatacttgact |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
42799871 |
attcgtgtaaaagaataaactcttggaagtcttgcagaaaatgcctcttggttttccattgattgttttgtaatatttctggatcaattaatacttgact |
42799970 |
T |
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| Q |
312 |
agacaattagtaggaaagataatgtagcaactaggattgat |
352 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
42799971 |
agacaattagtaggaaagataatgtagcaactaggattgat |
42800011 |
T |
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