View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12180_high_9 (Length: 348)

Name: NF12180_high_9
Description: NF12180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12180_high_9
NF12180_high_9
[»] chr5 (17 HSPs)
chr5 (14-330)||(40362290-40362610)
chr5 (36-232)||(40457302-40457498)
chr5 (36-225)||(40406345-40406534)
chr5 (36-225)||(40409054-40409243)
chr5 (39-225)||(40326384-40326570)
chr5 (90-203)||(40363351-40363464)
chr5 (225-328)||(40388495-40388599)
chr5 (47-225)||(40283464-40283642)
chr5 (225-328)||(40409284-40409389)
chr5 (220-328)||(40457164-40457273)
chr5 (232-329)||(40406582-40406680)
chr5 (60-225)||(40311125-40311290)
chr5 (151-230)||(40277946-40278025)
chr5 (59-225)||(40256900-40257066)
chr5 (112-230)||(40377061-40377179)
chr5 (59-230)||(40303518-40303684)
chr5 (112-230)||(40597554-40597672)


Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 14 - 330
Target Start/End: Original strand, 40362290 - 40362610
Alignment:
Q  14 tgtggagttaacagcaatccctatgtttttctaagtttttgcggggaagatactcgctactcctttacgggattcctctatcatgctttgtgtcgtgagg 113  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40362290 tgtggagttaacagcaatcgctatgtttttctaagtttttgcggggaagatactcgctactcctttacgggattcctctatcatgctttgtgtcgtgagg 40362389  T
Q  114 gattcaagatcttcatggatgatgagggattggagggtggaaaccaaatttcacaaactctactcaaagcaattgaaaaatcaaggctttcaattgttgt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40362390 gattcaagatcttcatggatgatgagggattggagggtggaaaccaaatttcacaaactctactcaaagcaattgaaaaatcaaggctttcaattgttgt 40362489  T
Q  214 tttgtctgaaaattatggagtgcaagaagacaaataatcaattggtttagccagtattttac-aaatagaataatcagatg---taagctatcaaacaaa 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||   ||||||| ||||||||    
T  40362490 tttgtctgaaaattatggagtgcaagaagacaaataatcaattggtttagccagtattttacaaaatagaataatcagatgtaataagctaccaaacaaa 40362589  T
Q  310 aatttatggtaaagccatgaa 330  Q
    |||||||||||||||||||||    
T  40362590 aatttatggtaaagccatgaa 40362610  T

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Target: chr5; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 36 - 232
Target Start/End: Complemental strand, 40457498 - 40457302
Alignment:
Q  36 atgtttttctaagtttttgcggggaagatactcgctactcctttacgggattcctctatcatgctttgtgtcgtgagggattcaagatcttcatggatga 135  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||    
T  40457498 atgtttttctaagtttttgcggggaagatactcgctactcctttacgggattcctctatcatgctttgcgtctagagggattcaagatcttcatggatga 40457399  T
Q  136 tgagggattggagggtggaaaccaaatttcacaaactctactcaaagcaattgaaaaatcaaggctttcaattgttgttttgtctgaaaattatgga 232  Q
    |||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  40457398 tgagggattggagggtggaaaccaaatttcacaaactcttttaaaagcaattgaaaaatcaaggctctcaattgttgttttgtccgaaaattatgga 40457302  T

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Target: chr5; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 36 - 225
Target Start/End: Original strand, 40406345 - 40406534
Alignment:
Q  36 atgtttttctaagtttttgcggggaagatactcgctactcctttacgggattcctctatcatgctttgtgtcgtgagggattcaagatcttcatggatga 135  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| ||  |||||||||||||||||||||||||||    
T  40406345 atgtttttctcagtttttgcggggaagatactcgctactcctttacaggatttctctaccatgctttgagtaatgagggattcaagatcttcatggatga 40406444  T
Q  136 tgagggattggagggtggaaaccaaatttcacaaactctactcaaagcaattgaaaaatcaaggctttcaattgttgttttgtctgaaaa 225  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  40406445 tgagggattggagggtggaaaccaaatttcacaaactcttctcgaagcaattgaaaaatcaaggctttcaattgttgttttgtctgaaaa 40406534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 36 - 225
Target Start/End: Original strand, 40409054 - 40409243
Alignment:
Q  36 atgtttttctaagtttttgcggggaagatactcgctactcctttacgggattcctctatcatgctttgtgtcgtgagggattcaagatcttcatggatga 135  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||||| |||| ||| |||||||||||| ||||||||||||||    
T  40409054 atgtttttctcagtttttgcggggaagatactcgctactcttttacaggatttctctatcatgatttgcgtcatgagggattcaaaatcttcatggatga 40409153  T
Q  136 tgagggattggagggtggaaaccaaatttcacaaactctactcaaagcaattgaaaaatcaaggctttcaattgttgttttgtctgaaaa 225  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40409154 tgagggattgaagggtggaaaccaaatttcacaaactttactcaaagcaattgaaaaatcaaggctttcaattgttgttttgtctgaaaa 40409243  T

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Target: chr5; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 39 - 225
Target Start/End: Original strand, 40326384 - 40326570
Alignment:
Q  39 tttttctaagtttttgcggggaagatactcgctactcctttacgggattcctctatcatgctttgtgtcgtgagggattcaagatcttcatggatgatga 138  Q
    ||||||||||||||   || ||||||||||||||||| || || || || |||||| ||  | ||||||| ||||| ||||||| |||||||||||||||    
T  40326384 tttttctaagttttaaaggagaagatactcgctactctttcacaggttttctctataatattctgtgtcgagaggggttcaagaccttcatggatgatga 40326483  T
Q  139 gggattggagggtggaaaccaaatttcacaaactctactcaaagcaattgaaaaatcaaggctttcaattgttgttttgtctgaaaa 225  Q
    || |||| ||||||| ||  ||||||||  | ||||| |||||||||||||   ||||||| |||||||||||||||| ||||||||    
T  40326484 ggaattgaagggtgggaatgaaatttcatcatctctaatcaaagcaattgaggcatcaaggatttcaattgttgttttctctgaaaa 40326570  T

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Target: chr5; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 90 - 203
Target Start/End: Complemental strand, 40363464 - 40363351
Alignment:
Q  90 tctatcatgctttgtgtcgtgagggattcaagatcttcatggatgatgagggattggagggtggaaaccaaatttcacaaactctactcaaagcaattga 189  Q
    |||||||||||||   ||||||||||||||| ||| ||||||||||| |||||||||| |||||||||||| |||||| |||||| ||||||| ||| ||    
T  40363464 tctatcatgcttttcatcgtgagggattcaaaatcgtcatggatgataagggattggatggtggaaaccaagtttcactaactcttctcaaagaaatcga 40363365  T
Q  190 aaaatcaaggcttt 203  Q
    | ||||||||||||    
T  40363364 acaatcaaggcttt 40363351  T

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Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 225 - 328
Target Start/End: Original strand, 40388495 - 40388599
Alignment:
Q  225 attatggagtgcaagaagacaaataatcaattggtttagccagtattttacaa-atagaataatcagatgtaagctatcaaacaaaaatttatggtaaag 323  Q
    |||||||||||||| |||||   ||||||||| ||||||||| |||||||||| |||||| |||||||||||||  || ||||||||| |||||||||||    
T  40388495 attatggagtgcaaaaagacccgtaatcaattagtttagccaatattttacaatatagaacaatcagatgtaagaaatgaaacaaaaagttatggtaaag 40388594  T
Q  324 ccatg 328  Q
    |||||    
T  40388595 ccatg 40388599  T

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Target: chr5; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 47 - 225
Target Start/End: Original strand, 40283464 - 40283642
Alignment:
Q  47 agtttttgcggggaagatactcgctactcctttacgggattcctctatcatgctttgtgtcgtgagggattcaagatcttcatggatgatgagggattgg 146  Q
    |||||| | ||||||||||||||  | || ||||| || || |||||| |||||||||| || ||||| ||||||| ||||||||||||||||| | ||     
T  40283464 agttttagaggggaagatactcgtcagtcttttacaggttttctctatgatgctttgtgccgggaggggttcaagaccttcatggatgatgaggaactga 40283563  T
Q  147 agggtggaaaccaaatttcacaaactctactcaaagcaattgaaaaatcaaggctttcaattgttgttttgtctgaaaa 225  Q
    | || ||  |  ||||||||  | ||||| |||||||||||||   ||||||| |||||||||||||||| ||||||||    
T  40283564 aaggcggggaggaaatttcatcatctctagtcaaagcaattgaggcatcaaggatttcaattgttgttttttctgaaaa 40283642  T

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Target: chr5; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 225 - 328
Target Start/End: Original strand, 40409284 - 40409389
Alignment:
Q  225 attatggagtgcaagaagacaaataatcaattggtttag-ccagtattttacaaa-tagaataatcagatgtaagctatcaaacaaaaatttatggtaaa 322  Q
    |||||||||||||||||||| |||||||||||||  | | ||| ||||||||||| |||||  | ||||||||||| |||||||||||| ||||||||||    
T  40409284 attatggagtgcaagaagaccaataatcaattggaattgaccaatattttacaaaatagaacgaccagatgtaagcaatcaaacaaaaagttatggtaaa 40409383  T
Q  323 gccatg 328  Q
    ||||||    
T  40409384 gccatg 40409389  T

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Target: chr5; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 220 - 328
Target Start/End: Complemental strand, 40457273 - 40457164
Alignment:
Q  220 tgaaaattatggagtgcaagaagacaaataatcaattggtttagccagtattttac-aaatagaataatcagatgtaagctatcaaacaaaaatttatgg 318  Q
    |||| |||||||||||||||||||| |||||| ||||||||| |||| |||||||| |||||||| | |||||| |||||||| ||| ||  | ||||||    
T  40457273 tgaagattatggagtgcaagaagaccaataataaattggtttggccactattttacaaaatagaacagtcagatttaagctataaaaaaagtagttatgg 40457174  T
Q  319 taaagccatg 328  Q
    ||||||||||    
T  40457173 taaagccatg 40457164  T

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Target: chr5; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 232 - 329
Target Start/End: Original strand, 40406582 - 40406680
Alignment:
Q  232 agtgcaagaagacaaataatcaattggtttagccagtattttacaaa-tagaataatcagatgtaagctatcaaacaaaaatttatggtaaagccatga 329  Q
    |||||| |||||| || ||||||||||||| |||  | ||||||||| ||||| |||||||||||||| |||||||||||| |||||| ||||||||||    
T  40406582 agtgcatgaagaccaagaatcaattggtttggcctattttttacaaaatagaacaatcagatgtaagcaatcaaacaaaaagttatggcaaagccatga 40406680  T

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Target: chr5; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 60 - 225
Target Start/End: Original strand, 40311125 - 40311290
Alignment:
Q  60 aagatactcgctactcctttacgggattcctctatcatgctttgtgtcgtgagggattcaagatcttcatggatgatgagggattggagggtggaaacca 159  Q
    ||||||||||  |||| |||||||| || |||||| ||||| | || || || || ||||||| |||||||||||||||||| ||| |||||||| || |    
T  40311125 aagatactcgtgactcttttacgggttttctctatgatgctctatgccgggaagggttcaagaccttcatggatgatgaggggttgaagggtggagacga 40311224  T
Q  160 aatttcacaaactctactcaaagcaattgaaaaatcaaggctttcaattgttgttttgtctgaaaa 225  Q
    |||||||    ||||| |||||||||||||   ||||||| ||||| || ||||||| ||| ||||    
T  40311225 aatttcatcttctctaatcaaagcaattgaggcatcaaggatttcagttattgttttctctaaaaa 40311290  T

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Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 230
Target Start/End: Original strand, 40277946 - 40278025
Alignment:
Q  151 tggaaaccaaatttcacaaactctactcaaagcaattgaaaaatcaaggctttcaattgttgttttgtctgaaaattatg 230  Q
    |||| |||||||||||| ||||||  | ||  ||||||||  | ||||||||||||||||||||||||||||||| ||||    
T  40277946 tggagaccaaatttcaccaactcttttaaattcaattgaagcagcaaggctttcaattgttgttttgtctgaaaactatg 40278025  T

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Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 225
Target Start/End: Complemental strand, 40257066 - 40256900
Alignment:
Q  59 gaagatactcgctactcctttacgggattcctctatcatgctttgtgtcgtgagggattcaagatcttcatggatgatgagggattggagggtggaaacc 158  Q
    ||||||||||| || || ||||| || |  ||||||| ||||||||| |  |  ||||| || | |||||||||||| |  ||||||||||||||  |||    
T  40257066 gaagatactcgttattcttttacaggctctctctatcgtgctttgtgccaggtcggatttaaaaccttcatggatgaaggaggattggagggtggtgacc 40256967  T
Q  159 aaatttcacaaactctactcaaagcaattgaaaaatcaaggctttcaattgttgttttgtctgaaaa 225  Q
    |||||||||   | || ||||| |||||||||  |||||||||||| ||| ||||||| || |||||    
T  40256966 aaatttcactttcacttctcaatgcaattgaagcatcaaggctttccattattgttttatccgaaaa 40256900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 230
Target Start/End: Original strand, 40377061 - 40377179
Alignment:
Q  112 gggattcaagatcttcatggatgatgagggattggagggtggaaaccaaatttcacaaactctactcaaagcaattgaaaaatcaaggctttcaattgtt 211  Q
    |||||||||||| |||||||||||| | |||||| |   |||| ||| |||||||||  |||| |  || |||||||||  | |||| ||||||||| ||    
T  40377061 gggattcaagattttcatggatgataaaggattgcacactggagaccgaatttcacattctcttcgaaatgcaattgaagcaacaagactttcaattatt 40377160  T
Q  212 gttttgtctgaaaattatg 230  Q
    |||||||||||||| ||||    
T  40377161 gttttgtctgaaaactatg 40377179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 59 - 230
Target Start/End: Original strand, 40303518 - 40303684
Alignment:
Q  59 gaagatactcgctactcctttacgggattcctctatcatgctttgtgtcgtgagggattcaagatcttcatggatgatgagggattggagggtggaaacc 158  Q
    ||||||||||| ||||| |||||||| || |||||| ||||| | ||||| || |||||||| |  ||||||||| ||| ||||||| |   |||  |||    
T  40303518 gaagatactcggtactcttttacgggttttctctatgatgctctctgtcgagaaggattcaaaacattcatggattatgggggattgcatattggggacc 40303617  T
Q  159 aaatttcacaaactctactcaaagcaattgaaaaatcaaggctttcaattgttgttttgtctgaaaattatg 230  Q
    |||||||||     |  |||  |  |||||||  ||||| |||||| |||||||||||||||||||||||||    
T  40303618 aaatttcac-----cctctcttattaattgaagcatcaaagctttcgattgttgttttgtctgaaaattatg 40303684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 230
Target Start/End: Complemental strand, 40597672 - 40597554
Alignment:
Q  112 gggattcaagatcttcatggatgatgagggattggagggtggaaaccaaatttcacaaactctactcaaagcaattgaaaaatcaaggctttcaattgtt 211  Q
    ||||||||||| ||||||||||||||  ||| || |   |||| || |||||||||  ||||| || || ||||||||| |||||||||| || ||| |     
T  40597672 gggattcaagaccttcatggatgatggaggactgcacactggagacaaaatttcacccactcttctaaatgcaattgaagaatcaaggctgtcgattatc 40597573  T
Q  212 gttttgtctgaaaattatg 230  Q
     ||||||||||||| ||||    
T  40597572 attttgtctgaaaactatg 40597554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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