View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12180_low_1 (Length: 1325)

Name: NF12180_low_1
Description: NF12180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12180_low_1
NF12180_low_1
[»] chr3 (5 HSPs)
chr3 (9-676)||(41786915-41787602)
chr3 (678-1093)||(41787733-41788149)
chr3 (963-1089)||(10866054-10866180)
chr3 (1214-1306)||(41788279-41788370)
chr3 (1181-1261)||(10866308-10866388)
[»] chr8 (2 HSPs)
chr8 (963-1093)||(1331648-1331779)
chr8 (1187-1306)||(1331916-1332035)
[»] scaffold0632 (2 HSPs)
scaffold0632 (964-1098)||(1758-1893)
scaffold0632 (1181-1223)||(1611-1653)
[»] chr5 (3 HSPs)
chr5 (964-1089)||(21490629-21490754)
chr5 (966-1093)||(34870911-34871039)
chr5 (1217-1261)||(21490851-21490895)


Alignment Details
Target: chr3 (Bit Score: 555; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 9 - 676
Target Start/End: Original strand, 41786915 - 41787602
Alignment:
Q  9 cagaacctgtggaatcaattgaaattgtgattgggagag--gtacatactaacatttagtgtgacacacctcaaatagaatttcctccaaatggttaaag 106  Q
    |||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41786915 cagaacgtgtggaatcaattgaaattgtgattgggagagaggtacatactaacatttagtgtgacacacctcaaatagaatttcctccaaatggttaaag 41787014  T
Q  107 actggaaggnnnnnnnnctagccaagaaggagcaccaaaataggaatgagatggagggaatgaattttgtacccagagtcaactcaaatat--ggagata 204  Q
    |||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  41787015 actggaaggaaaaaaaactagccaagaaggagcaccaaaataggaatgagatggagggaatgaattttgtacccagagtcaactcaaatatatggagata 41787114  T
Q  205 tagcccgttttaaatttgtcaaagttaataatgttaaaatactagcaatttggttcatgtattagattctgcttccaatccacatctttaactgtcctat 304  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41787115 tagcccgttttaaatttgtcaaagttaataatattaaaatactagcaatttggttcatgtatttgattctgcttccaatccacatctttaactgtcctat 41787214  T
Q  305 atgtactgttttaagttttcaatttcaagt-----------------gtttcaatttgtcttttatgttccaaaataataaatactccttttttattatg 387  Q
    ||||||||||||||||||||||||||||||                 ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  41787215 atgtactgttttaagttttcaatttcaagtctttgtattttctatatgtttcaatttgtcttttatgttccaaaataacaaatactccttttttattatg 41787314  T
Q  388 tgatgcaacaaatgagtttattttggttttacttaatcgcataccttgcatataataaccatgcaaccattggcggctccatgcaaatttaaagaactct 487  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41787315 tgatgcaacaaatgagtttattttggttttacttaatcgcataccttgcatataataaccatgcaaccattggcggctccatgcaaatttaaagaactct 41787414  T
Q  488 caagaacatatgtagggaaacgattgtaccctttaagggtatgcatgcacccattatttgcaaacctaatgtgcaggcaactaccgttaactctgtcttc 587  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  41787415 caagaacatatgtagggaaacgattgtaccctttaaaggtatgcatgcacccatt-ttcgcaaacctaatgtgcaggcaactaccgttaactctgtcttc 41787513  T
Q  588 atttttcatccttttttatgtgaaaatccaatggatttagcaatgtgaacaaaactatgattgcaattaacaattatccagaaaagttg 676  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41787514 atttttcatccttttttatgtgaaaatccaatggatttagcaatgtgaacaaaactatgattgcaattaacaattatccagaaaagttg 41787602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 678 - 1093
Target Start/End: Original strand, 41787733 - 41788149
Alignment:
Q  678 gggttgcatatcttacgactaaggcaaggaaagagaaaaaatagcaatgtactgaatatacttgtgagctcatttgatctatcctgctcctccactaacg 777  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41787733 gggttgcatatcttacgactaaggcaaggaaagagaaaaaatagcaatgtactgaatatacttgtgagctcatttgatctatcctgctcctccactaacg 41787832  T
Q  778 aaccacgtgttaaatttcatgaaccaccatggaaatcacaatagaaagaagtcacacctnnnnnnnnn-gttataacagactatatctatcaggtaaaac 876  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||          |||||||||||||||||||||||||||||||    
T  41787833 aaccacgtgttaaatttcatgaaccaccatggaactaacaatagaaagaagtcacacctaaaaaaaaaagttataacagactatatctatcaggtaaaac 41787932  T
Q  877 cacgtagtccaactctggaccctattcgacatatgtctcagtttttcattcattcgtctctctcagctctgccgtttttacttggactaagagcaactcc 976  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41787933 cacgtagtccacctctggaccctattcgacatatgtctcagtttttcattcattcgtctctctcagctctgccgtttttacttggactaagagcaactcc 41788032  T
Q  977 aatgctagttctagaaagtgttcttgatactcaaaaataagttcttgttttctttactattggagatggatgatgtggaattcagggtggagaactattc 1076  Q
    ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||    
T  41788033 aatcctagttctaaaaagtgttcttgatactcaaaaataagttcttgttttctttaccattggagatggatgatgtggaattcagggtggagaactgttc 41788132  T
Q  1077 tatgtgaagaacatgtt 1093  Q
    |||||||||||||||||    
T  41788133 tatgtgaagaacatgtt 41788149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 3e-36
Query Start/End: Original strand, 963 - 1089
Target Start/End: Original strand, 10866054 - 10866180
Alignment:
Q  963 ctaagagcaactccaatgctagttctagaaagtgttcttgatactcaaaaataagttcttgttttctttactattggagatggatgatgtggaattcagg 1062  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||| |||| ||||||||||||||||||  |||    
T  10866054 ctaagagcaactccaatgctagttctagagagtgttcttgatactcaaaaacaaattcttgttttctttaccattgcagatggatgatgtggaatcgagg 10866153  T
Q  1063 gtggagaactattctatgtgaagaaca 1089  Q
     ||||||||| || | |||| ||||||    
T  10866154 ttggagaactgttttctgtggagaaca 10866180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 4e-29
Query Start/End: Original strand, 1214 - 1306
Target Start/End: Original strand, 41788279 - 41788370
Alignment:
Q  1214 aatccaaatcaaacactt-aaaattccgaatctgaaaatcaattacaaaattaagatgagagaattataagaaaaaaggaaagaaggagatgat 1306  Q
    |||||||||||||||||| ||||||||||||||||||||||  |||||| || |||||||||||||||||||||||||||||||||||||||||    
T  41788279 aatccaaatcaaacacttgaaaattccgaatctgaaaatca--tacaaatttgagatgagagaattataagaaaaaaggaaagaaggagatgat 41788370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 4e-23
Query Start/End: Original strand, 1181 - 1261
Target Start/End: Original strand, 10866308 - 10866388
Alignment:
Q  1181 cacaactacaaacatttaaaatccaaatttaagaatccaaatcaaacacttaaaattccgaatctgaaaatcaattacaaa 1261  Q
    ||||| ||||| ||||  ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  10866308 cacaattacaatcattccaaatctaaatttaagaatccaaatcaaacacttaaaattccaaatctgaaaatcaattacaaa 10866388  T

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Target: chr8 (Bit Score: 96; Significance: 2e-46; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 963 - 1093
Target Start/End: Original strand, 1331648 - 1331779
Alignment:
Q  963 ctaagagcaactccaatgctagttctagaaagtgttcttgata-ctcaaaaataagttcttgttttctttactattggagatggatgatgtggaattcag 1061  Q
    |||||||||||||||||||||||||||||  |||||||||||| |||||||  ||||||||||||||||||| |||||||||||||||||||||||||||    
T  1331648 ctaagagcaactccaatgctagttctagacggtgttcttgataactcaaaagcaagttcttgttttctttaccattggagatggatgatgtggaattcag 1331747  T
Q  1062 ggtggagaactattctatgtgaagaacatgtt 1093  Q
    |||||||||||  |||||||||||||||||||    
T  1331748 ggtggagaactgctctatgtgaagaacatgtt 1331779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 3e-39
Query Start/End: Original strand, 1187 - 1306
Target Start/End: Original strand, 1331916 - 1332035
Alignment:
Q  1187 tacaaacatttaaaatccaaatttaagaatccaaatcaaacacttaaaattccgaatctgaaaatcaattacaaaattaagatgagagaattataagaaa 1286  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||| ||||| || |||||| ||||||||||||||    
T  1331916 tacaaacattcaaaatccaaatttaaaaatccaaatcaaacacttaaaattccaaatccgaaaatcaatcacaaatttgagatgaaagaattataagaaa 1332015  T
Q  1287 aaaggaaagaaggagatgat 1306  Q
    ||| ||||||||||||||||    
T  1332016 aaaagaaagaaggagatgat 1332035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0632 (Bit Score: 92; Significance: 5e-44; HSPs: 2)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 92; E-Value: 5e-44
Query Start/End: Original strand, 964 - 1098
Target Start/End: Complemental strand, 1893 - 1758
Alignment:
Q  964 taagagcaactccaatgctagttctagaaagtgttcttgatactcaaaaataagttcttgt-tttctttactattggagatggatgatgtggaattcagg 1062  Q
    ||||||||||| ||||||||||||||||  |||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||| ||||    
T  1893 taagagcaacttcaatgctagttctagactgtgttcttgatactcaaaaacaagttcttgtgtttctttaccattggagatggatgatgtggaatccagg 1794  T
Q  1063 gtggagaactattctatgtgaagaacatgttacaac 1098  Q
     ||||||||| |||||||||||||||||||| ||||    
T  1793 atggagaactgttctatgtgaagaacatgttccaac 1758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0632; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1181 - 1223
Target Start/End: Complemental strand, 1653 - 1611
Alignment:
Q  1181 cacaactacaaacatttaaaatccaaatttaagaatccaaatc 1223  Q
    ||||| |||||||||| |||||| |||||||||||||||||||    
T  1653 cacaattacaaacattcaaaatctaaatttaagaatccaaatc 1611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 6e-31; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 6e-31
Query Start/End: Original strand, 964 - 1089
Target Start/End: Original strand, 21490629 - 21490754
Alignment:
Q  964 taagagcaactccaatgctagttctagaaagtgttcttgatactcaaaaataagttcttgttttctttactattggagatggatgatgtggaattcaggg 1063  Q
    |||||||||||||||||||||||| | |  |||||||||| |||||||| |||||||||| ||||||||| ||||||||||||||||||||||| || |     
T  21490629 taagagcaactccaatgctagttccacacggtgttcttgaaactcaaaactaagttcttgctttctttaccattggagatggatgatgtggaatccatgt 21490728  T
Q  1064 tggagaactattctatgtgaagaaca 1089  Q
    ||||||||  ||||||||| ||||||    
T  21490729 tggagaaccgttctatgtggagaaca 21490754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 9e-21
Query Start/End: Original strand, 966 - 1093
Target Start/End: Original strand, 34870911 - 34871039
Alignment:
Q  966 agagcaactccaatgctagttctagaaagtgttcttgatactcaaaaat-aagttcttgttttctttactattggagatggatgatgtggaattcagggt 1064  Q
    ||||||||| ||| | |||||||| | | ||||||||| |||||||||  ||||||||| ||||||| |||||||||||| |||||||||| | |||| |    
T  34870911 agagcaactacaacggtagttctacacattgttcttgaaactcaaaaaacaagttcttgctttctttgctattggagatgaatgatgtggactccaggtt 34871010  T
Q  1065 ggagaactattctatgtgaagaacatgtt 1093  Q
    |||||||| |||| |||| ||||||||||    
T  34871011 ggagaactgttctctgtggagaacatgtt 34871039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 1217 - 1261
Target Start/End: Original strand, 21490851 - 21490895
Alignment:
Q  1217 ccaaatcaaacacttaaaattccgaatctgaaaatcaattacaaa 1261  Q
    ||||||||||||||| ||||||| |||| ||||||||||||||||    
T  21490851 ccaaatcaaacacttcaaattccaaatccgaaaatcaattacaaa 21490895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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