View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12180_low_12 (Length: 361)
Name: NF12180_low_12
Description: NF12180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12180_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 345
Target Start/End: Original strand, 34431411 - 34431738
Alignment:
| Q |
18 |
ctccaatcccagctgttgctaactcctatatacctttttggccccacaccccacttaactgattaccagaatcacggtgtcatcataattttatcaaaaa |
117 |
Q |
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| T |
34431411 |
ctccaatcccagctgttgctaactcctatatacctttttggccccacaccccacttaattgtttaacagaatcacggtgtcatcataattttatcaaaaa |
34431510 |
T |
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| Q |
118 |
ctattgaacaaaattataatgttatcgtgattctgtcaaattcaccattcggatgagatatatgatatgatacatacttttcattcaaccttccaagcat |
217 |
Q |
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| T |
34431511 |
ctataaaacaaaattataatgttatcgtgattttgtcaaattcaccattcggatgagatatatgatatgatacatacttttcattcaaccttccaagcat |
34431610 |
T |
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| Q |
218 |
atagaaacaagcaatactctgatgaggatgataatgaatcactgacactacggccctccactgaatcacaagtactactccttgtctcatttgataatgg |
317 |
Q |
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| T |
34431611 |
atagaaacaagcaatactctgatgaggatgataatgaatcactgacactacggccctccactgaatcacaagtactactccttgtctcatttgataatgg |
34431710 |
T |
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| Q |
318 |
agtagtggaagaagatgaacatgacaaa |
345 |
Q |
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| T |
34431711 |
agtagtggaagaagatgaacatgacaaa |
34431738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 43402602 - 43402649
Alignment:
| Q |
195 |
ttttcattcaaccttccaagcatatagaaacaagcaatactctgatga |
242 |
Q |
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| T |
43402602 |
ttttcattcaaccttccaagcataaagaaacaagcaaaactctgatga |
43402649 |
T |
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