View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12180_low_16 (Length: 312)
Name: NF12180_low_16
Description: NF12180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12180_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 294
Target Start/End: Complemental strand, 34434602 - 34434327
Alignment:
| Q |
18 |
aagatgctatcaagagtggatctttctatggtttgatcttttatctcttagctttaagccagtttattacatttattataaaacaaaatgatttagagat |
117 |
Q |
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| T |
34434602 |
aagatgctatcaagagtggatctttctatggtttgatcttttatctcttagctttaagccagtttattacatttattataaaacaaaatgatttagagat |
34434503 |
T |
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| Q |
118 |
atagtcaaaacatataatctatgttgtgtttgttaccataataaatacaacttttgtttatagaagaaataatggacctgaaaacatttgaagtgtgaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34434502 |
atagtcaaaacatataatctatgttgtgtttgttaccataatgaatacaacttttgtttatagaagaaataatggacgtgaaaacatttgaagtgtgaat |
34434403 |
T |
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| Q |
218 |
aggtattgattaaacataactgagacttgcgtctccatgagcttagctcatttagtagagacattgcataaaatata |
294 |
Q |
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| T |
34434402 |
aggtattgattaaacataac-gcgatttgcgtccccatgagcttagctcatttagtagagacattgcataaaatata |
34434327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 293
Target Start/End: Original strand, 39164979 - 39165020
Alignment:
| Q |
252 |
ccatgagcttagctcatttagtagagacattgcataaaatat |
293 |
Q |
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| T |
39164979 |
ccatgagcttagctcagttggtagagacattgcataacatat |
39165020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 296
Target Start/End: Complemental strand, 17278360 - 17278319
Alignment:
| Q |
255 |
tgagcttagctcatttagtagagacattgcataaaatataca |
296 |
Q |
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| T |
17278360 |
tgagcttaactcaattagtagagacaatgcataaaatataca |
17278319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 294
Target Start/End: Complemental strand, 9985185 - 9985145
Alignment:
| Q |
254 |
atgagcttagctcatttagtagagacattgcataaaatata |
294 |
Q |
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||||||||| ||||||||||||||||||| ||||| ||||| |
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| T |
9985185 |
atgagcttaactcatttagtagagacattacataatatata |
9985145 |
T |
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