View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12180_low_17 (Length: 302)

Name: NF12180_low_17
Description: NF12180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12180_low_17
NF12180_low_17
[»] chr3 (12 HSPs)
chr3 (19-297)||(23467140-23467418)
chr3 (19-165)||(23427143-23427289)
chr3 (19-188)||(23400736-23400905)
chr3 (38-188)||(23452689-23452839)
chr3 (219-288)||(23427050-23427118)
chr3 (24-188)||(23438407-23438571)
chr3 (26-188)||(23470907-23471069)
chr3 (95-188)||(23350472-23350565)
chr3 (37-188)||(23403193-23403341)
chr3 (37-188)||(23461797-23461945)
chr3 (37-165)||(23382057-23382182)
chr3 (118-186)||(23433899-23433967)
[»] scaffold0201 (1 HSPs)
scaffold0201 (26-188)||(9969-10128)


Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-147; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 19 - 297
Target Start/End: Complemental strand, 23467418 - 23467140
Alignment:
Q  19 acgttgtattagtgacagttatcttgggacattcatttctgattatgtactggtatgctggcatgttcacaacagacaagatagtgaaacttatgatttt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  23467418 acgttgtattagtgacagttatcttgggacattcatttctgattatgtactggtatgctggcatgttcacaacagacaagatagtgaaatttatgatttt 23467319  T
Q  119 tgcaacttatcatttcaatttctacttcaaggtcacaaggaacaattgtggtgttcaacagaggggataagtgtgttgtatctttaggaatttaattaat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23467318 tgcaacttatcatttcaatttctacttcaaggtcacaaggaacaattgtggtgttcaacagaggggataagtgtgttgtatctttaggaatgtaattaat 23467219  T
Q  219 caatgaaaacacatgttttaattttgtagctagtttcttttcatcttctccttcttagtcttagagcccctatgcttct 297  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23467218 caatgaaaacatatgttttaattttgtagctagtttcttttcatcttctccttcttagtcttagagccccaatgcttct 23467140  T

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Target: chr3; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 23427289 - 23427143
Alignment:
Q  19 acgttgtattagtgacagttatcttgggacattcatttctgattatgtactggtatgctggcatgttcacaacagacaagatagtgaaacttatgatttt 118  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  23427289 acgttgtagtagtgacagttatcttgggacattcatttctgatcatgtactggtatgctggcatgttcacaacagacaatatagtgaaagttatgatttt 23427190  T
Q  119 tgcaacttatcatttcaatttctacttcaaggtcacaaggaacaatt 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  23427189 tgcaacttatcatttcaatttctacttcaaggtcacaaggaacaatt 23427143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 23400905 - 23400736
Alignment:
Q  19 acgttgtattagtgacagttatcttgggacattcatttctgattatgtactggtatgctggcatgttcacaacagacaagatagtgaaacttatgatttt 118  Q
    |||| |||||||||||||||||||||||| ||||||| ||||| ||||| ||||||||| |||||||||||||||||||||||||| || ||||||||||    
T  23400905 acgtcgtattagtgacagttatcttgggatattcattactgatcatgtattggtatgctagcatgttcacaacagacaagatagtggaagttatgatttt 23400806  T
Q  119 tgcaacttatcatttcaatttctacttcaaggtcacaaggaacaattgtggtgttcaacagaggggataa 188  Q
    ||||||||||||||||| ||||||||||||||||||||| ||| |||| |||| ||||| ||||||||||    
T  23400805 tgcaacttatcatttcagtttctacttcaaggtcacaagaaactattgcggtggtcaacggaggggataa 23400736  T

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Target: chr3; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 38 - 188
Target Start/End: Complemental strand, 23452839 - 23452689
Alignment:
Q  38 tatcttgggacattcatttctgattatgtactggtatgctggcatgttcacaacagacaagatagtgaaacttatgatttttgcaacttatcatttcaat 137  Q
    |||||||||||||| ||||| ||| ||||| || |||||||| ||| | |||||| |||||| | || || | |||| ||||||||| |||||||||| |    
T  23452839 tatcttgggacattaatttcagatcatgtattgatatgctggaatggttacaacaaacaagaaactggaagtcatgacttttgcaacctatcatttcagt 23452740  T
Q  138 ttctacttcaaggtcacaaggaacaattgtggtgttcaacagaggggataa 188  Q
    | |||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  23452739 tcctacttcaaggtcaaaaggaacaattgtggtggtcaacagaggggataa 23452689  T

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Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 219 - 288
Target Start/End: Complemental strand, 23427118 - 23427050
Alignment:
Q  219 caatgaaaacacatgttttaattttgtagctagtttcttttcatcttctccttcttagtcttagagcccc 288  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  23427118 caatgaaaacacatgttttaattttgtagctag-ttcctttcatcttctccttcttagtcttagagcccc 23427050  T

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Target: chr3; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 24 - 188
Target Start/End: Complemental strand, 23438571 - 23438407
Alignment:
Q  24 gtattagtgacagttatcttgggacattcatttctgattatgtactggtatgctggcatgttcacaacagacaagatagtgaaacttatgatttttgcaa 123  Q
    |||||||| ||| |||||| |||||||| ||||| ||| ||||| || |||||||||||| | ||||||||||||| | || || | ||||| ||| |||    
T  23438571 gtattagtcacaattatctcgggacattaatttcagatcatgtattgatatgctggcatggttacaacagacaagaaaatggaagtaatgatatttacaa 23438472  T
Q  124 cttatcatttcaatttctacttcaaggtcacaaggaacaattgtggtgttcaacagaggggataa 188  Q
    |||||||||||||||  ||| ||||| || ||| ||| |||||||||| ||||  ||||||||||    
T  23438471 cttatcatttcaattcatacatcaagatcccaatgaagaattgtggtggtcaaaggaggggataa 23438407  T

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Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 188
Target Start/End: Complemental strand, 23471069 - 23470907
Alignment:
Q  26 attagtgacagttatcttgggacattcatttctgattatgtactggtatgctggcatgttcacaacagacaagatagtgaaacttatgatttttgcaact 125  Q
    |||||| ||| |||| |||||||||| ||||| ||| ||| | || |||| ||||||| | ||||||||||||| | || || ||||||| |||||||||    
T  23471069 attagtcacaattattttgggacattaatttcagatcatgcattgatatgttggcatggttacaacagacaagaaaatggaagttatgatatttgcaact 23470970  T
Q  126 tatcatttcaatttctacttcaaggtcacaaggaacaattgtggtgttcaacagaggggataa 188  Q
    |||||||||||||  |||||||||||| ||| ||| ||||  |||| ||||  ||||||||||    
T  23470969 tatcatttcaattcatacttcaaggtcccaatgaagaattacggtggtcaaaggaggggataa 23470907  T

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Target: chr3; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 95 - 188
Target Start/End: Complemental strand, 23350565 - 23350472
Alignment:
Q  95 caagatagtgaaacttatgatttttgcaacttatcatttcaatttctacttcaaggtcacaaggaacaattgtggtgttcaacagaggggataa 188  Q
    ||||| |||| || |||||| ||||||||| |||||||||||||| |||||||||||||||||||| |||||||||| || || ||||||||||    
T  23350565 caagaaagtggaagttatgacttttgcaacctatcatttcaatttatacttcaaggtcacaaggaaaaattgtggtggtcgactgaggggataa 23350472  T

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Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 37 - 188
Target Start/End: Complemental strand, 23403341 - 23403193
Alignment:
Q  37 ttatcttgggacattcatttctgattatgtactggtatgctggcatgttcacaacagacaagatagtgaaacttatgatttttgcaacttatcatttcaa 136  Q
    |||||| |||||||| ||||| ||| ||||| || | || ||||||| | |||||| |||||| |||| || |||||||| |   |||||||||||||||    
T  23403341 ttatctcgggacattaatttcagatcatgtattgatgtgttggcatggttacaacatacaagaaagtggaagttatgattgt---aacttatcatttcaa 23403245  T
Q  137 tttctacttcaaggtcacaaggaacaattgtggtgttcaacagaggggataa 188  Q
    ||  |||||||||||| ||| ||| || ||||||| ||||||||||||||||    
T  23403244 ttcatacttcaaggtcccaatgaagaactgtggtggtcaacagaggggataa 23403193  T

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Target: chr3; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 37 - 188
Target Start/End: Complemental strand, 23461945 - 23461797
Alignment:
Q  37 ttatcttgggacattcatttctgattatgtactggtatgctggcatgttcacaacagacaagatagtgaaacttatgatttttgcaacttatcatttcaa 136  Q
    |||||| |||||||| ||||| ||| ||||| || |  | ||||||| | |||||| |||||| |||| || |||||||| |   |||||||||||| ||    
T  23461945 ttatctcgggacattaatttcagatcatgtattgatgcgttggcatggttacaacatacaagaaagtggaagttatgattgt---aacttatcatttaaa 23461849  T
Q  137 tttctacttcaaggtcacaaggaacaattgtggtgttcaacagaggggataa 188  Q
    ||  |||||||||||| ||| ||| |||||||||| ||||||||||||||||    
T  23461848 ttcatacttcaaggtcccaatgaagaattgtggtggtcaacagaggggataa 23461797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 165
Target Start/End: Complemental strand, 23382182 - 23382057
Alignment:
Q  37 ttatcttgggacattcatttctgattatgtactggtatgctggcatgttcacaacagacaagatagtgaaacttatgatttttgcaacttatcatttcaa 136  Q
    |||||| |||||||| ||||| ||| ||||| || |||| ||||||| | |||||| |||||| |||| || |||||||| |   |||||||||||||||    
T  23382182 ttatctcgggacattaatttcagatcatgtattgatatggtggcatggttacaacatacaagaaagtggaagttatgattgt---aacttatcatttcaa 23382086  T
Q  137 tttctacttcaaggtcacaaggaacaatt 165  Q
    ||  |||||||||||| ||| ||| ||||    
T  23382085 ttcatacttcaaggtcccaatgaagaatt 23382057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 186
Target Start/End: Complemental strand, 23433967 - 23433899
Alignment:
Q  118 ttgcaacttatcatttcaatttctacttcaaggtcacaaggaacaattgtggtgttcaacagaggggat 186  Q
    ||||||| |||||||||||||  | | ||||| || ||| ||| |||||||||| ||||||||||||||    
T  23433967 ttgcaacctatcatttcaattcatgcatcaagatctcaatgaagaattgtggtggtcaacagaggggat 23433899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 26 - 188
Target Start/End: Complemental strand, 10128 - 9969
Alignment:
Q  26 attagtgacagttatcttgggacattcatttctgattatgtactggtatgctggcatgttcacaacagacaagatagtgaaacttatgatttttgcaact 125  Q
    |||||| ||| ||||| ||||||||| ||||| ||| ||||| || |||||||||||| | |||| |||||||| | || || |||||||| |   ||||    
T  10128 attagtcacaattatcatgggacattaatttcagatcatgtattgatatgctggcatggttacaatagacaagaaaatggaagttatgattgt---aact 10032  T
Q  126 tatcatttcaatttctacttcaaggtcacaaggaacaattgtggtgttcaacagaggggataa 188  Q
    |||||||| ||||  |||||||||||| ||| ||| |||||||||| ||||||||||||||||    
T  10031 tatcatttaaattcatacttcaaggtcccaatgaagaattgtggtggtcaacagaggggataa 9969  T

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