View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12180_low_2 (Length: 1322)

Name: NF12180_low_2
Description: NF12180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12180_low_2
NF12180_low_2
[»] chr8 (24 HSPs)
chr8 (984-1315)||(38611243-38611569)
chr8 (596-925)||(38611715-38612044)
chr8 (149-430)||(38613476-38613757)
chr8 (422-552)||(38612088-38612218)
chr8 (22-152)||(6311097-6311229)
chr8 (22-150)||(7290080-7290211)
chr8 (1124-1278)||(34726587-34726741)
chr8 (24-149)||(36979184-36979308)
chr8 (24-149)||(4760242-4760366)
chr8 (1124-1278)||(34721459-34721613)
chr8 (24-149)||(30655448-30655572)
chr8 (1127-1260)||(34730819-34730952)
chr8 (22-128)||(39784977-39785086)
chr8 (43-149)||(18853356-18853457)
chr8 (30-149)||(18870734-18870849)
chr8 (45-128)||(25328456-25328540)
chr8 (24-158)||(10689309-10689442)
chr8 (24-113)||(33037972-33038063)
chr8 (1037-1115)||(34726770-34726843)
chr8 (857-921)||(34722165-34722229)
chr8 (45-128)||(35745213-35745298)
chr8 (1065-1110)||(34730951-34730996)
chr8 (1039-1102)||(34721655-34721713)
chr8 (861-923)||(34731457-34731519)
[»] chr5 (21 HSPs)
chr5 (22-150)||(1457315-1457446)
chr5 (22-149)||(27444771-27444901)
chr5 (22-149)||(43592080-43592210)
chr5 (22-149)||(43598525-43598655)
chr5 (22-149)||(43604017-43604147)
chr5 (22-149)||(43609509-43609639)
chr5 (22-149)||(27449615-27449745)
chr5 (22-132)||(30631227-30631338)
chr5 (22-128)||(28807729-28807837)
chr5 (22-128)||(15044512-15044618)
chr5 (84-149)||(31180079-31180142)
chr5 (45-128)||(37556802-37556887)
chr5 (45-128)||(37561624-37561709)
chr5 (24-149)||(38191983-38192105)
chr5 (24-149)||(38219208-38219330)
chr5 (45-128)||(2785197-2785282)
chr5 (45-128)||(31397171-31397256)
chr5 (45-128)||(31402028-31402113)
chr5 (45-110)||(33791158-33791223)
chr5 (93-149)||(35387474-35387527)
chr5 (45-110)||(33768021-33768086)
[»] chr4 (11 HSPs)
chr4 (22-150)||(51520257-51520388)
chr4 (22-128)||(9224560-9224668)
chr4 (22-128)||(9229347-9229455)
chr4 (22-150)||(56146865-56146996)
chr4 (23-128)||(3813846-3813954)
chr4 (22-128)||(18855549-18855657)
chr4 (24-128)||(45347973-45348079)
chr4 (24-128)||(45357452-45357558)
chr4 (24-149)||(24741748-24741871)
chr4 (22-128)||(5732486-5732593)
chr4 (24-149)||(29760449-29760572)
[»] scaffold0135 (1 HSPs)
scaffold0135 (22-128)||(35215-35323)
[»] chr7 (13 HSPs)
chr7 (22-128)||(12396735-12396843)
chr7 (22-128)||(12406155-12406263)
chr7 (45-128)||(24024506-24024589)
chr7 (22-128)||(4866553-4866661)
chr7 (22-128)||(31109737-31109844)
chr7 (45-151)||(2057763-2057866)
chr7 (24-149)||(20357713-20357837)
chr7 (22-128)||(19992135-19992243)
chr7 (22-128)||(21812393-21812501)
chr7 (24-149)||(1533608-1533730)
chr7 (24-149)||(21645818-21645940)
chr7 (74-149)||(2479148-2479221)
chr7 (74-153)||(47263485-47263562)
[»] chr6 (14 HSPs)
chr6 (22-128)||(11856795-11856903)
chr6 (22-128)||(14737730-14737838)
chr6 (22-128)||(14742589-14742697)
chr6 (22-128)||(22010850-22010958)
chr6 (22-128)||(6438324-6438431)
chr6 (22-128)||(28184325-28184436)
chr6 (45-128)||(28155749-28155832)
chr6 (24-149)||(5674934-5675057)
chr6 (24-149)||(30125960-30126084)
chr6 (45-128)||(6005239-6005324)
chr6 (45-110)||(5343322-5343387)
chr6 (45-110)||(33330625-33330690)
chr6 (45-128)||(33336122-33336207)
chr6 (45-128)||(16838566-16838651)
[»] chr3 (15 HSPs)
chr3 (22-128)||(22173348-22173456)
chr3 (24-151)||(7167049-7167174)
chr3 (22-128)||(18656256-18656363)
chr3 (24-149)||(2671752-2671876)
chr3 (46-149)||(40372986-40373085)
chr3 (24-150)||(8477170-8477295)
chr3 (22-149)||(28504020-28504145)
chr3 (45-149)||(8739254-8739354)
chr3 (45-149)||(9091492-9091592)
chr3 (45-128)||(8512037-8512122)
chr3 (45-128)||(8516917-8517002)
chr3 (45-128)||(2677266-2677351)
chr3 (45-128)||(2673110-2673195)
chr3 (45-128)||(10207755-10207840)
chr3 (476-526)||(14667244-14667294)
[»] chr2 (10 HSPs)
chr2 (22-128)||(44312777-44312885)
chr2 (24-151)||(11099093-11099219)
chr2 (22-128)||(32246607-32246716)
chr2 (22-128)||(39812141-39812250)
chr2 (24-149)||(14291295-14291419)
chr2 (24-149)||(9296567-9296691)
chr2 (45-128)||(19344243-19344327)
chr2 (45-128)||(19349101-19349185)
chr2 (24-149)||(25403443-25403565)
chr2 (24-149)||(25398305-25398427)
[»] chr1 (11 HSPs)
chr1 (22-128)||(25445244-25445352)
chr1 (22-128)||(39445322-39445430)
chr1 (22-128)||(44024027-44024135)
chr1 (50-128)||(41386571-41386650)
chr1 (45-128)||(41398060-41398144)
chr1 (22-128)||(1055166-1055274)
chr1 (45-110)||(43988644-43988709)
chr1 (52-113)||(24787564-24787624)
chr1 (24-149)||(24202932-24203054)
chr1 (476-526)||(1012494-1012544)
chr1 (93-149)||(19359079-19359132)
[»] scaffold0464 (1 HSPs)
scaffold0464 (22-128)||(185-293)
[»] scaffold0127 (1 HSPs)
scaffold0127 (50-128)||(34132-34211)
[»] scaffold0355 (2 HSPs)
scaffold0355 (45-128)||(9818-9902)
scaffold0355 (22-128)||(40-143)
[»] scaffold0978 (1 HSPs)
scaffold0978 (26-150)||(404-528)
[»] scaffold0479 (1 HSPs)
scaffold0479 (67-128)||(13171-13233)
[»] scaffold0197 (1 HSPs)
scaffold0197 (45-128)||(19343-19428)
[»] scaffold0028 (1 HSPs)
scaffold0028 (45-128)||(149134-149219)
[»] scaffold0259 (1 HSPs)
scaffold0259 (45-128)||(2429-2514)
[»] scaffold0188 (1 HSPs)
scaffold0188 (24-149)||(24208-24331)
[»] scaffold0087 (1 HSPs)
scaffold0087 (74-149)||(44174-44247)


Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 984 - 1315
Target Start/End: Complemental strand, 38611569 - 38611243
Alignment:
Q  984 gtccgccatgctgcctgtttgaaagttgtgtggtcttgacctttcatcggccaagcacatcattaaaagttaatactactatactactcaatctgaataa 1083  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||     ||||||||||||||    
T  38611569 gtccgccatgctgcctgtttgaaagttgtgtggtcttgacctttcatcagccaagcacatcattaaaagttaatactacta-----ctcaatctgaataa 38611475  T
Q  1084 acttgctgtcttttttggatggtgttgaataatttactttaaatgctgaaggttccatgatctgtttgagttcgatgaaaagaagagaagctgcagatga 1183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38611474 acttgctgtcttttttggatggtgttgaataatttactttaaatgctgaaggttccatgatctgtttgagttcgatgaaaagaagagaagctgcagatga 38611375  T
Q  1184 caactttcacgtcacaatacaagacaccgtaaatatcatcctgaatctgtccaatcaagtcaatcagctttgtcttcttcatcctgtggtaatacctttt 1283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38611374 caactttcacgtcacaatacaagacaccgtaaatatcatcctgaatctgtccaatcaagtcaatcagctttgtcttcttcatcctgtggtaatacctttt 38611275  T
Q  1284 ttctacttttgcagttcatcacaggttctgct 1315  Q
    || ||||||||||||||||||||| |||||||    
T  38611274 ttttacttttgcagttcatcacagtttctgct 38611243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 257; E-Value: 1e-142
Query Start/End: Original strand, 596 - 925
Target Start/End: Complemental strand, 38612044 - 38611715
Alignment:
Q  596 cacttacatggtattgcaaaaacacatatattagtttgaaattgaaaggggaacatgaaatgaaaagttgaccttctccttccgattacaaaaatacatg 695  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  38612044 cacttacatggtattgcaaaaacacatatattagtttgaaattgaaaggggagcatgaaatgaaaagttgaccttctccttccgattacaaaaatacatg 38611945  T
Q  696 ttattcccgacctgcatagttattatacaagtaagttaagagtaaattattggaaacaaaaacattgagatatccacagccannnnnnnnnnnnnnnnnn 795  Q
     ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                      
T  38611944 gtattccccacctgcatagttattatacaagtaagttaagagtaaattattggaaacaaaaacattgagatatccacagccagtttgttgttgttgttgt 38611845  T
Q  796 nacgctagattttgaggtgaaggactgaagtggttgttttagctcttatcaaattcacgggtctacatcaaggagttctaaatcagattcaaacagttca 895  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38611844 tacgctagattttgaggtgaaggactgaagtggttgttttagctcttatcaaattcacgggtctacatcaaggagttctaaatcagattcaaacagttca 38611745  T
Q  896 tcttcaattagggatattagcaaaacattt 925  Q
    || |||||||||||||||||||||||||||    
T  38611744 tcatcaattagggatattagcaaaacattt 38611715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 254; E-Value: 1e-140
Query Start/End: Original strand, 149 - 430
Target Start/End: Complemental strand, 38613757 - 38613476
Alignment:
Q  149 agaagcaaaattcagcagattcaaaccttggcaacggtgtttgtgcaatgtatttaagaccctgcaggtgaaaacggagattacaatgagtatcaagttt 248  Q
    |||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38613757 agaagcaaaatcgagctgattcaaaccttggcaacggtgtttgtgcaatgtatttaagaccctgcaggtgaaaacggagattacaatgagtatcaagttt 38613658  T
Q  249 aaaattactcataattttgaaacctgggaccagagatgatgatgatggccaaacttgctacgagatagaaaaataaataaaagtagagaacaaagaagga 348  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  38613657 aaaattactcataattttgaaagctgggaccagagaagatgatgatggccaaacttgttacgagatagaaaaataaataaaagtagagaacaaagaagga 38613558  T
Q  349 gatggaacggcaccttcagatatgaagttcctgaatttgttggcaaagcaaaggagctctgtgaaatatttagtaagaatta 430  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  38613557 gatggaacggcaccttcagatatgaagttcctgaatttgttggcaaagcaaaggagctctgtggaatatttagtaagaatta 38613476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 127; E-Value: 6e-65
Query Start/End: Original strand, 422 - 552
Target Start/End: Complemental strand, 38612218 - 38612088
Alignment:
Q  422 taagaattaacatcagatcattttctaaacaggaaaaatacaagagataacaccaataataacggcaccagaagaatgagcgaaggtgttgggcattgta 521  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38612218 taagaattaacatcagatcattttctaaacagaaaaaatacaagagataacaccaataataacggcaccagaagaatgagcgaaggtgttgggcattgta 38612119  T
Q  522 atttaaaagtgaggtgcaaatgtaagggcgt 552  Q
    |||||||||||||||||||||||||||||||    
T  38612118 atttaaaagtgaggtgcaaatgtaagggcgt 38612088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 114; E-Value: 4e-57
Query Start/End: Original strand, 22 - 152
Target Start/End: Complemental strand, 6311229 - 6311097
Alignment:
Q  22 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 119  Q
    |||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6311229 tatacactagtctagggctgctttgttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 6311130  T
Q  120 ttggtgtgagtttcaaccggaatcacaacagaa 152  Q
    ||||||||||||||||||||| |||||||||||    
T  6311129 ttggtgtgagtttcaaccggattcacaacagaa 6311097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 85; E-Value: 7e-40
Query Start/End: Original strand, 22 - 150
Target Start/End: Original strand, 7290080 - 7290211
Alignment:
Q  22 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 119  Q
    |||||||||||||||||||| |||  ||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  7290080 tatacactagtctagggctgctttgttgttgtttgtttggagaccatttgttctcattgattaccactatctcttgctccacacatcaatgtttatttca 7290179  T
Q  120 ttggtgtgagttt-caaccggaatcacaacag 150  Q
    |||||||||||||  ||||||| |||||||||    
T  7290180 ttggtgtgagtttggaaccggattcacaacag 7290211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 83; E-Value: 1e-38
Query Start/End: Original strand, 1124 - 1278
Target Start/End: Complemental strand, 34726741 - 34726587
Alignment:
Q  1124 aaatgctgaaggttccatgatctgtttgagttcgatgaaaagaagagaagctgcagatgacaactttcacgtcacaatacaagacaccgtaaatatcatc 1223  Q
    |||||||||||||||||||||||||||||||| |||| |||||||| |||||||||| |||||||||||  ||||||| |||| | ||||||||||||||    
T  34726741 aaatgctgaaggttccatgatctgtttgagtttgatggaaagaagaaaagctgcagacgacaactttcaaatcacaatgcaaggcgccgtaaatatcatc 34726642  T
Q  1224 ctgaatctgtccaatcaagtcaatcagctttgtcttcttcatcctgtggtaatac 1278  Q
     | || ||||||||||||| ||||| |||||||||| ||||  | ||||||||||    
T  34726641 gtcaagctgtccaatcaagccaatcggctttgtcttattcacgcagtggtaatac 34726587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 74; E-Value: 3e-33
Query Start/End: Original strand, 24 - 149
Target Start/End: Complemental strand, 36979308 - 36979184
Alignment:
Q  24 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 121  Q
    |||||||||||||||||| ||||||||||  ||||||||||||||||  | |||||||||||||||||| ||||||||||||||| |||||  |||||||    
T  36979308 tacactagtctagggctgtttttgttgttgttgcttggaaaccattttgt-tcattgattaccactatctcttgctccacacatctttgtt--tttcatt 36979212  T
Q  122 ggtgtgagtttcaaccggaatcacaaca 149  Q
    ||||||||||||||||||| ||||||||    
T  36979211 ggtgtgagtttcaaccggattcacaaca 36979184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 70; E-Value: 6e-31
Query Start/End: Original strand, 24 - 149
Target Start/End: Original strand, 4760242 - 4760366
Alignment:
Q  24 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 121  Q
    |||||||||||||||||| ||||||||||  |||||||||||||||| | ||||||||||||||||||| || |||||||||||| |||||  |||||||    
T  4760242 tacactagtctagggctgtttttgttgttgttgcttggaaaccattt-tgctcattgattaccactatctctagctccacacatctttgtt--tttcatt 4760338  T
Q  122 ggtgtgagtttcaaccggaatcacaaca 149  Q
    | ||||||||||||||||| ||||||||    
T  4760339 gatgtgagtttcaaccggattcacaaca 4760366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 67; E-Value: 4e-29
Query Start/End: Original strand, 1124 - 1278
Target Start/End: Complemental strand, 34721613 - 34721459
Alignment:
Q  1124 aaatgctgaaggttccatgatctgtttgagttcgatgaaaagaagagaagctgcagatgacaactttcacgtcacaatacaagacaccgtaaatatcatc 1223  Q
    |||| ||||||||||||||||||||||||||| |||| |||||||| |||||||||| |||  |||||||  |||||| |||| | ||||||  ||  ||    
T  34721613 aaatactgaaggttccatgatctgtttgagtttgatggaaagaagaaaagctgcagacgacgtctttcacaacacaatgcaaggcgccgtaatcattctc 34721514  T
Q  1224 ctgaatctgtccaatcaagtcaatcagctttgtcttcttcatcctgtggtaatac 1278  Q
     | || ||| ||||||||||||||||||||||||||| ||| |||||||||||||    
T  34721513 gtaaaactgcccaatcaagtcaatcagctttgtcttcgtcaccctgtggtaatac 34721459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 24 - 149
Target Start/End: Complemental strand, 30655572 - 30655448
Alignment:
Q  24 tacactagtctagggctggtttt-gttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcat 120  Q
    |||||||||||||||||| |||| ||||||  ||||||||||||||||  | |||||||||||||||||| ||||||||||||||| ||||   ||||||    
T  30655572 tacactagtctagggctgttttttgttgttgttgcttggaaaccattttgt-tcattgattaccactatctcttgctccacacatctttgt---tttcat 30655477  T
Q  121 tggtgtgagtttcaaccggaatcacaaca 149  Q
    |||||||||||||||||||| ||||||||    
T  30655476 tggtgtgagtttcaaccggattcacaaca 30655448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 62; E-Value: 4e-26
Query Start/End: Original strand, 1127 - 1260
Target Start/End: Complemental strand, 34730952 - 34730819
Alignment:
Q  1127 tgctgaaggttccatgatctgtttgagttcgatgaaaagaagagaagctgcagatgacaactttcacgtcacaatacaagacaccgtaaatatcatcctg 1226  Q
    ||||||||||||||  |||||  |||||||||||||||||| ||||||||||||  ||||||||||||||||||| |||| |  |||||  |||| ||||    
T  34730952 tgctgaaggttccacaatctggctgagttcgatgaaaagaaaagaagctgcagagaacaactttcacgtcacaatgcaaggcgacgtaagcatcagcctg 34730853  T
Q  1227 aatctgtccaatcaagtcaatcagctttgtcttc 1260  Q
    || |  |||||||||||||||||| |||||||||    
T  34730852 aagcactccaatcaagtcaatcagttttgtcttc 34730819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 39784977 - 39785086
Alignment:
Q  22 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttc 118  Q
    ||||||||||  |||||||| |||  |||| || ||||||| ||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||    
T  39784977 tatacactagcttagggctgttttgttgttattggcttggagaccatttgttctcattgattatcactatcacttgctccacacatctttggtttatttc 39785076  T
Q  119 attggtgtga 128  Q
    ||||||||||    
T  39785077 attggtgtga 39785086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 43 - 149
Target Start/End: Original strand, 18853356 - 18853457
Alignment:
Q  43 ttttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaat 142  Q
    |||||||||||||||||||||||||||  ||||| ||||||||||||| |||||||||||||||    ||| |||| ||||||||||||||||||||| |    
T  18853356 ttttgttgtttgcttggaaaccatttga-ctcatagattaccactatctcttgctccacacatc----tttgtttcgttggtgtgagtttcaaccggatt 18853450  T
Q  143 cacaaca 149  Q
    |||||||    
T  18853451 cacaaca 18853457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 30 - 149
Target Start/End: Original strand, 18870734 - 18870849
Alignment:
Q  30 agtctagggctggttttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgag 129  Q
    ||||||||||   ||||||||||||||||||||||||||   ||||| |||||||| |||| ||||||||||||||| ||||||   |||||||||||||    
T  18870734 agtctagggcgttttttgttgtttgcttggaaaccatttaa-ctcatagattaccattatctcttgctccacacatctttgttt---tcattggtgtgag 18870829  T
Q  130 tttcaaccggaatcacaaca 149  Q
    ||||||||||| ||||||||    
T  18870830 tttcaaccggattcacaaca 18870849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 57; E-Value: 4e-23
Query Start/End: Original strand, 45 - 128
Target Start/End: Original strand, 25328456 - 25328540
Alignment:
Q  45 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatttcattggtgtga 128  Q
    |||||||| ||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||| |||||    
T  25328456 ttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccgcacatcattgatttatttcattgttgtga 25328540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 55; E-Value: 6e-22
Query Start/End: Original strand, 24 - 158
Target Start/End: Original strand, 10689309 - 10689442
Alignment:
Q  24 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 121  Q
    |||||||  |||||| || ||||||||||  ||||||||||||||| |  ||||| ||||||||||||| ||||||||||||||| |||||  |||||||    
T  10689309 tacactacactagggttgtttttgttgttgttgcttggaaaccattaga-ctcatagattaccactatctcttgctccacacatctttgtt--tttcatt 10689405  T
Q  122 ggtgtgagtttcaaccggaatcacaacagaagcaaaa 158  Q
    ||||||||||||||||| || ||||||| || |||||    
T  10689406 ggtgtgagtttcaaccgaaaacacaacacaatcaaaa 10689442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 24 - 113
Target Start/End: Original strand, 33037972 - 33038063
Alignment:
Q  24 tacactagtctagggctggtt-ttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgttt 113  Q
    |||||||||||||||||| || ||||||||  ||||||||||||||||  | |||||||||||||||||| ||||||||||||||| ||||||    
T  33037972 tacactagtctagggctgtttattgttgttgttgcttggaaaccattttgt-tcattgattaccactatctcttgctccacacatctttgttt 33038063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 1037 - 1115
Target Start/End: Complemental strand, 34726843 - 34726770
Alignment:
Q  1037 agcacatcattaaaagttaatactactatactactcaatctgaataaacttgctgtcttttttggatggtgttgaataa 1115  Q
    |||||||||||||||||||||| || ||     |||||||||| | |||||||||||||||||||||||||||||||||    
T  34726843 agcacatcattaaaagttaatattaata-----ctcaatctgattcaacttgctgtcttttttggatggtgttgaataa 34726770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 857 - 921
Target Start/End: Complemental strand, 34722229 - 34722165
Alignment:
Q  857 tctacatcaaggagttctaaatcagattcaaacagttcatcttcaattagggatattagcaaaac 921  Q
    ||||||||| ||||||| ||||||||||||| |||||||||  ||| ||||||||||||||||||    
T  34722229 tctacatcagggagttcgaaatcagattcaatcagttcatcaccaactagggatattagcaaaac 34722165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 45 - 128
Target Start/End: Complemental strand, 35745298 - 35745213
Alignment:
Q  45 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 128  Q
    |||||||| |||||||  |||||||  ||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  35745298 ttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 35745213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1065 - 1110
Target Start/End: Complemental strand, 34730996 - 34730951
Alignment:
Q  1065 tactactcaatctgaataaacttgctgtcttttttggatggtgttg 1110  Q
    ||||||||| ||||| |||||||||||||||||||| |||||||||    
T  34730996 tactactcagtctgattaaacttgctgtcttttttgaatggtgttg 34730951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1039 - 1102
Target Start/End: Complemental strand, 34721713 - 34721655
Alignment:
Q  1039 cacatcattaaaagttaatactactatactactcaatctgaataaacttgctgtcttttttgga 1102  Q
    ||||||||||||||||||||      ||||||||||||||| | ||||||||||||||||||||    
T  34721713 cacatcattaaaagttaata-----ttactactcaatctgattcaacttgctgtcttttttgga 34721655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 861 - 923
Target Start/End: Complemental strand, 34731519 - 34731457
Alignment:
Q  861 catcaaggagttctaaatcagattcaaacagttcatcttcaattagggatattagcaaaacat 923  Q
    ||||||||||||| ||||||| |||||| |||||||| | || |||| ||| |||||||||||    
T  34731519 catcaaggagttcaaaatcagcttcaaatagttcatcgttaaataggaataatagcaaaacat 34731457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 1e-44; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 22 - 150
Target Start/End: Original strand, 1457315 - 1457446
Alignment:
Q  22 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 119  Q
    |||||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1457315 tatacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttca 1457414  T
Q  120 ttggtgtgagttt-caaccggaatcacaacag 150  Q
    |||||||||||||  ||||||| |||||||||    
T  1457415 ttggtgtgagtttggaaccggattcacaacag 1457446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 3e-39
Query Start/End: Original strand, 22 - 149
Target Start/End: Complemental strand, 27444901 - 27444771
Alignment:
Q  22 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 119  Q
    |||||||||||||||||||| | |  ||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  27444901 tatacactagtctagggctgctatgttgttgtttgcttggagaccatttgtactcattgattaccactatctcttgctccacacatcattgtttatttca 27444802  T
Q  120 ttggtgtgagttt-caaccggaatcacaaca 149  Q
    |||||||||||||  ||||||| ||||||||    
T  27444801 ttggtgtgagtttggaaccggattcacaaca 27444771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 3e-39
Query Start/End: Original strand, 22 - 149
Target Start/End: Complemental strand, 43592210 - 43592080
Alignment:
Q  22 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 119  Q
    |||||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  43592210 tatacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttca 43592111  T
Q  120 ttggtgtgagttt-caaccggaatcacaaca 149  Q
    ||| ||||| |||  ||||||| ||||||||    
T  43592110 ttgatgtgactttggaaccggattcacaaca 43592080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 84; E-Value: 3e-39
Query Start/End: Original strand, 22 - 149
Target Start/End: Complemental strand, 43598655 - 43598525
Alignment:
Q  22 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 119  Q
    |||||||||||||||||||| |||  ||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  43598655 tatacactagtctagggctgctttgttgttgtttgcttggagaccaattgttctcattgattaccactatctcttgctccacacatcattgtttatttca 43598556  T
Q  120 ttggtgtgagttt-caaccggaatcacaaca 149  Q
    ||||||||| |||  ||||||| ||||||||    
T  43598555 ttggtgtgactttggaaccggattcacaaca 43598525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 3e-39
Query Start/End: Original strand, 22 - 149
Target Start/End: Complemental strand, 43604147 - 43604017
Alignment:
Q  22 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 119  Q
    |||||||||||||||||||| |||  ||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  43604147 tatacactagtctagggctgctttgttgttgtttgcttggagaccaattgttctcattgattaccactatctcttgctccacacatcattgtttatttca 43604048  T
Q  120 ttggtgtgagttt-caaccggaatcacaaca 149  Q
    ||||||||| |||  ||||||| ||||||||    
T  43604047 ttggtgtgactttggaaccggattcacaaca 43604017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 84; E-Value: 3e-39
Query Start/End: Original strand, 22 - 149
Target Start/End: Complemental strand, 43609639 - 43609509
Alignment:
Q  22 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 119  Q
    |||||||||||||||||||| |||  ||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  43609639 tatacactagtctagggctgctttgttgttgtttgcttggagaccaattgttctcattgattaccactatctcttgctccacacatcattgtttatttca 43609540  T
Q  120 ttggtgtgagttt-caaccggaatcacaaca 149  Q
    ||||||||| |||  ||||||| ||||||||    
T  43609539 ttggtgtgactttggaaccggattcacaaca 43609509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 80; E-Value: 7e-37
Query Start/End: Original strand, 22 - 149
Target Start/End: Complemental strand, 27449745 - 27449615
Alignment:
Q  22 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 119  Q
    |||||||||||||||||||| | |  ||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  27449745 tatacactagtctagggctgctatgttgttgtttgcttggagaccatttgtactcattgattaccactatctcttgctccacatatcattgtttatttca 27449646  T
Q  120 ttggtgtgagttt-caaccggaatcacaaca 149  Q
    |||||||||||||  ||||||| ||||||||    
T  27449645 ttggtgtgagtttggaaccggattcacaaca 27449615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 78; E-Value: 1e-35
Query Start/End: Original strand, 22 - 132
Target Start/End: Complemental strand, 30631338 - 30631227
Alignment:
Q  22 tatacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 119  Q
    |||||||||||||||||||| ||||||||||  |||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  30631338 tatacactagtctagggctg-ttttgttgttgttgcttgaaaaccatttgttctcatagattaccactatctcttgctccacacatcattgtttatttca 30631240  T
Q  120 ttggtgtgagttt 132  Q
    || ||||||||||    
T  30631239 tttgtgtgagttt 30631227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 73; E-Value: 1e-32
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 28807729 - 28807837
Alignment:
Q  22 tatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttca 119  Q
    ||||||||||  |||||||| || ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  28807729 tatacactagcttagggctgtttgttgttgtttgcttggaagccatttgttctcattgattatcactatcacttgctccacacatcattggtttatttca 28807828  T
Q  120 ttggtgtga 128  Q
    |||||||||    
T  28807829 ttggtgtga 28807837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 63; E-Value: 1e-26
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 15044618 - 15044512
Alignment:
Q  22 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 119  Q
    |||||||||||||||||||| |||  ||||||| | ||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||  |||||||    
T  15044618 tatacactagtctagggctgttttgttgttgttggtttggagaccatttgttctcattgattaccactatcacttgctctacacgtcattg--tatttca 15044521  T
Q  120 ttggtgtga 128  Q
    |||||||||    
T  15044520 ttggtgtga 15044512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 84 - 149
Target Start/End: Complemental strand, 31180142 - 31180079
Alignment:
Q  84 cactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 149  Q
    ||||||| |||||||||||||||||||||   ||||||||||||||||||||||||| ||||||||    
T  31180142 cactatctcttgctccacacatcattgtta--ttcattggtgtgagtttcaaccggattcacaaca 31180079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 45 - 128
Target Start/End: Original strand, 37556802 - 37556887
Alignment:
Q  45 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 128  Q
    |||||||| |||||||  ||||||| |||||| ||||| ||||||||||||||||||||||| || ||||||| ||||||||||||    
T  37556802 ttgttgttagcttggaggccatttgctctcatagattatcactatcacttgctccacacatctttggtttattatcattggtgtga 37556887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 45 - 128
Target Start/End: Original strand, 37561624 - 37561709
Alignment:
Q  45 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 128  Q
    |||||||| |||||||  ||||||| |||||| ||||| ||||||||||||||||||||||| || ||||||| ||||||||||||    
T  37561624 ttgttgttagcttggaggccatttgctctcatagattatcactatcacttgctccacacatctttggtttattatcattggtgtga 37561709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 24 - 149
Target Start/End: Complemental strand, 38192105 - 38191983
Alignment:
Q  24 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 121  Q
    |||||||||||||||||| ||||||||||  |||||||| ||  |||   | ||| ||||||||||  |  |||||||||||||| |||||||   ||||    
T  38192105 tacactagtctagggctgtttttgttgttgttgcttggagacacttta--cacatagattaccacttccttttgctccacacatctttgttta---catt 38192011  T
Q  122 ggtgtgagtttcaaccggaatcacaaca 149  Q
    ||||||||||||||||||| ||||||||    
T  38192010 ggtgtgagtttcaaccggattcacaaca 38191983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 24 - 149
Target Start/End: Complemental strand, 38219330 - 38219208
Alignment:
Q  24 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 121  Q
    |||||||||||||||||| ||||||||||  |||||||| ||  |||   | ||| ||||||||||  |  |||||||||||||| |||||||   ||||    
T  38219330 tacactagtctagggctgtttttgttgttgttgcttggagacacttta--cacatagattaccacttccttttgctccacacatctttgttta---catt 38219236  T
Q  122 ggtgtgagtttcaaccggaatcacaaca 149  Q
    ||||||||||||||||||| ||||||||    
T  38219235 ggtgtgagtttcaaccggattcacaaca 38219208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 45 - 128
Target Start/End: Complemental strand, 2785282 - 2785197
Alignment:
Q  45 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 128  Q
    |||||||| |||||||  |||||||  ||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  2785282 ttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 2785197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 45 - 128
Target Start/End: Original strand, 31397171 - 31397256
Alignment:
Q  45 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 128  Q
    |||||||| |||||||  |||||||  ||||| ||||| | ||||||||||||||||||||||||| |||||| ||||||||||||    
T  31397171 ttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtga 31397256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 45 - 128
Target Start/End: Original strand, 31402028 - 31402113
Alignment:
Q  45 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 128  Q
    |||||||| |||||||  |||||||  ||||| ||||| | ||||||||||||||||||||||||| |||||| ||||||||||||    
T  31402028 ttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtga 31402113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 110
Target Start/End: Complemental strand, 33791223 - 33791158
Alignment:
Q  45 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg 110  Q
    |||||||| |||||||  |||||||  ||||| ||||| | |||||||||||||||||||||||||    
T  33791223 ttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattg 33791158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 35387527 - 35387474
Alignment:
Q  93 ttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 149  Q
    |||||||||||||| |||||||   ||||||||||||||| ||||||| ||||||||    
T  35387527 ttgctccacacatctttgttta---cattggtgtgagttttaaccggattcacaaca 35387474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 110
Target Start/End: Complemental strand, 33768086 - 33768021
Alignment:
Q  45 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg 110  Q
    |||||||| |||||||   ||||||  ||||| ||||| | |||||||||||||||||||||||||    
T  33768086 ttgttgttagcttggaggtcatttgcactcatagattatctctatcacttgctccacacatcattg 33768021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 1e-44; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 22 - 150
Target Start/End: Complemental strand, 51520388 - 51520257
Alignment:
Q  22 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 119  Q
    |||||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  51520388 tatacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttca 51520289  T
Q  120 ttggtgtgagttt-caaccggaatcacaacag 150  Q
    |||||||||||||  ||||||| |||||||||    
T  51520288 ttggtgtgagtttggaaccggattcacaacag 51520257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 9224560 - 9224668
Alignment:
Q  22 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 119  Q
    |||||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9224560 tatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttca 9224659  T
Q  120 ttggtgtga 128  Q
    |||||||||    
T  9224660 ttggtgtga 9224668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 9229347 - 9229455
Alignment:
Q  22 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 119  Q
    |||||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9229347 tatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttca 9229446  T
Q  120 ttggtgtga 128  Q
    |||||||||    
T  9229447 ttggtgtga 9229455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 7e-40
Query Start/End: Original strand, 22 - 150
Target Start/End: Original strand, 56146865 - 56146996
Alignment:
Q  22 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 119  Q
    |||||||||||||||||||| |||  ||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  56146865 tatacactagtctagggctgctttgttgttgtttgcttggagaccaattgttctcattgattaccactatctcttgctccacacatcattgtttatttca 56146964  T
Q  120 ttggtgtgagttt-caaccggaatcacaacag 150  Q
    ||||||||| |||  ||||||| |||||||||    
T  56146965 ttggtgtgaatttggaaccggattcacaacag 56146996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 3e-33
Query Start/End: Original strand, 23 - 128
Target Start/End: Complemental strand, 3813954 - 3813846
Alignment:
Q  23 atacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttca 119  Q
    ||||||||||||||| ||| |||  ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3813954 atacactagtctaggactgttttgttgttgtttgcttggagaccatttgctctcattgattaccactatcacttgctccacacatcattggtttatttca 3813855  T
Q  120 ttggtgtga 128  Q
    |||||||||    
T  3813854 ttggtgtga 3813846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 1e-32
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 18855657 - 18855549
Alignment:
Q  22 tatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttca 119  Q
    ||||||||||  |||||||| || ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  18855657 tatacactagcttagggctgtttgttgttgtttgcttggaagccatttgttctcattgattatcactatcacttgctccacacatcattggtttatttca 18855558  T
Q  120 ttggtgtga 128  Q
    |||||||||    
T  18855557 ttggtgtga 18855549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 24 - 128
Target Start/End: Original strand, 45347973 - 45348079
Alignment:
Q  24 tacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 121  Q
    |||||||||||||| ||| |||  ||||||| ||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  45347973 tacactagtctaggactgttttgttgttgttagcttgaagaccatttgttctcatagattaccactatcacttgctccacacatcattgtttatttcatt 45348072  T
Q  122 ggtgtga 128  Q
    |||||||    
T  45348073 ggtgtga 45348079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 24 - 128
Target Start/End: Original strand, 45357452 - 45357558
Alignment:
Q  24 tacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 121  Q
    |||||||||||||| ||| |||  ||||||| ||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  45357452 tacactagtctaggactgttttgttgttgttagcttgaagaccatttgttctcatagattaccactatcacttgctccacacatcattgtttatttcatt 45357551  T
Q  122 ggtgtga 128  Q
    |||||||    
T  45357552 ggtgtga 45357558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 71; E-Value: 2e-31
Query Start/End: Original strand, 24 - 149
Target Start/End: Complemental strand, 24741871 - 24741748
Alignment:
Q  24 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 121  Q
    |||||||||||||||||| ||||||||||  ||||||||||||||||  | |||||||||||||||||| ||||||||||||||| ||||   |||||||    
T  24741871 tacactagtctagggctgtttttgttgttgttgcttggaaaccattttgt-tcattgattaccactatctcttgctccacacatctttgt---tttcatt 24741776  T
Q  122 ggtgtgagtttcaaccggaatcacaaca 149  Q
    ||||||||||||||||||| ||||||||    
T  24741775 ggtgtgagtttcaaccggattcacaaca 24741748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 4e-26
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 5732593 - 5732486
Alignment:
Q  22 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 119  Q
    ||||||||||  |||||||| |||  ||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||    
T  5732593 tatacactagcttagggctgttttgttgttgttagcttggagaccatttgttctcattgattaccaccatcacttgctccacacatcattgtat-tttca 5732495  T
Q  120 ttggtgtga 128  Q
    |||||||||    
T  5732494 ttggtgtga 5732486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 62; E-Value: 4e-26
Query Start/End: Original strand, 24 - 149
Target Start/End: Complemental strand, 29760572 - 29760449
Alignment:
Q  24 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 121  Q
    ||||||||||||||| || ||||||||||  ||||||||||||||||  | | |||||||||||||||| ||||||||||||||| ||||||  ||||||    
T  29760572 tacactagtctagggttg-ttttgttgttgttgcttggaaaccattttgttt-attgattaccactatctcttgctccacacatctttgttt--ttcatt 29760477  T
Q  122 ggtgtgagtttcaaccggaatcacaaca 149  Q
    ||||||||||||||||||| ||||||||    
T  29760476 ggtgtgagtttcaaccggattcacaaca 29760449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 86; Significance: 2e-40; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 35215 - 35323
Alignment:
Q  22 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 119  Q
    |||||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  35215 tatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttca 35314  T
Q  120 ttggtgtga 128  Q
    |||||||||    
T  35315 ttggtgtga 35323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 2e-40; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 12396843 - 12396735
Alignment:
Q  22 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 119  Q
    |||||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12396843 tatacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttca 12396744  T
Q  120 ttggtgtga 128  Q
    |||||||||    
T  12396743 ttggtgtga 12396735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 12406263 - 12406155
Alignment:
Q  22 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 119  Q
    |||||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12406263 tatacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttca 12406164  T
Q  120 ttggtgtga 128  Q
    |||||||||    
T  12406163 ttggtgtga 12406155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 7e-37
Query Start/End: Original strand, 45 - 128
Target Start/End: Original strand, 24024506 - 24024589
Alignment:
Q  45 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 128  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24024506 ttgttgtttgcttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 24024589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 1e-35
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 4866661 - 4866553
Alignment:
Q  22 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 119  Q
    |||||||||||||||| ||| |||  ||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4866661 tatacactagtctaggactgttttgttgttgtttgcttggagaccatttgtcctcattgattaccactatctcttgctccacacatcattgtttatttca 4866562  T
Q  120 ttggtgtga 128  Q
    |||||||||    
T  4866561 ttggtgtga 4866553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 6e-31
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 31109737 - 31109844
Alignment:
Q  22 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 119  Q
    ||||||||||| |||||||| |||  ||||||| ||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  31109737 tatacactagt-tagggctgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctgcacacatcattgtttatttca 31109835  T
Q  120 ttggtgtga 128  Q
    |||||||||    
T  31109836 ttggtgtga 31109844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 1e-29
Query Start/End: Original strand, 45 - 151
Target Start/End: Complemental strand, 2057866 - 2057763
Alignment:
Q  45 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatca 144  Q
    |||||||||||||||||||||||||  ||||| ||||||||||||| ||||||||||||||| ||||||  ||||||||||||||||||||||||| |||    
T  2057866 ttgttgtttgcttggaaaccatttga-ctcatagattaccactatctcttgctccacacatctttgttt--ttcattggtgtgagtttcaaccggattca 2057770  T
Q  145 caacaga 151  Q
    |||||||    
T  2057769 caacaga 2057763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 2e-25
Query Start/End: Original strand, 24 - 149
Target Start/End: Original strand, 20357713 - 20357837
Alignment:
Q  24 tacactagtctagggctggttttgttgttt---gcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcat 120  Q
    |||||||||||||||||| ||||||||||    ||||||| ||||||||  ||||| ||||||||||||| ||||||||||||||| ||||||   ||||    
T  20357713 tacactagtctagggctgtttttgttgttgttagcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttgttt---tcat 20357808  T
Q  121 tggtgtgagtttcaaccggaatcacaaca 149  Q
    |||||||||||||||||||| ||||||||    
T  20357809 tggtgtgagtttcaaccggattcacaaca 20357837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 4e-23
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 19992243 - 19992135
Alignment:
Q  22 tatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttca 119  Q
    ||||||||||  |||||||| || |||||||  |||||||| |||||||||||||||||||| ||||||||| ||||||||||||| || ||||||||||    
T  19992243 tatacactagcttagggctgtttgttgttgtaagcttggaagccatttgttctcattgattatcactatcacctgctccacacatctttggtttatttca 19992144  T
Q  120 ttggtgtga 128  Q
    |||||||||    
T  19992143 ttggtgtga 19992135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 4e-23
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 21812393 - 21812501
Alignment:
Q  22 tatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttca 119  Q
    ||||||||||  |||||||| || |||||||| |||||||| ||||||| |||||| ||||||||||||| ||||||||||||||| || ||||||||||    
T  21812393 tatacactagcttagggctgtttgttgttgttagcttggaagccatttgctctcatagattaccactatctcttgctccacacatctttggtttatttca 21812492  T
Q  120 ttggtgtga 128  Q
    |||||||||    
T  21812493 ttggtgtga 21812501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 24 - 149
Target Start/End: Original strand, 1533608 - 1533730
Alignment:
Q  24 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 121  Q
    |||||||| || |||||||||||||||||  |||||||||||  ||| ||||||||||||||||||||   |||||||||||||| ||||   |||||||    
T  1533608 tacactagactggggctggttttgttgttgttgcttggaaac--ttttttctcattgattaccactatattttgctccacacatctttgt---tttcatt 1533702  T
Q  122 ggtgtgagtttcaaccggaatcacaaca 149  Q
    ||||||||||| ||||||| ||||||||    
T  1533703 ggtgtgagttttaaccggattcacaaca 1533730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 149
Target Start/End: Complemental strand, 21645940 - 21645818
Alignment:
Q  24 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 121  Q
    |||||||| ||||||||| ||||||||||  |||||||| ||  |||   ||||| ||||||||||  |  |||||||||||||| |||||||   ||||    
T  21645940 tacactagactagggctgtttttgttgttgttgcttggagacacttta--ctcatagattaccactcccttttgctccacacatctttgttta---catt 21645846  T
Q  122 ggtgtgagtttcaaccggaatcacaaca 149  Q
    ||||||||||| ||||||| ||||||||    
T  21645845 ggtgtgagttttaaccggattcacaaca 21645818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 149
Target Start/End: Complemental strand, 2479221 - 2479148
Alignment:
Q  74 cattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaa-tcacaaca 149  Q
    |||||||||||||| ||  |||||||||||||| ||||||  ||||||||||||| | |||||||||| ||||||||    
T  2479221 cattgattaccact-tcctttgctccacacatctttgttt--ttcattggtgtgattatcaaccggaactcacaaca 2479148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 153
Target Start/End: Complemental strand, 47263562 - 47263485
Alignment:
Q  74 cattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaa-tcacaacagaag 153  Q
    |||||||||||||| ||  ||||||||| |||| ||||||  ||||||||||||| | |||||||||| ||||||||||||    
T  47263562 cattgattaccact-tcctttgctccacgcatctttgttt--ttcattggtgtgattatcaaccggaactcacaacagaag 47263485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 2e-40; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 11856903 - 11856795
Alignment:
Q  22 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 119  Q
    |||||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  11856903 tatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttca 11856804  T
Q  120 ttggtgtga 128  Q
    |||||||||    
T  11856803 ttggtgtga 11856795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 14737730 - 14737838
Alignment:
Q  22 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 119  Q
    |||||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  14737730 tatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattgtttatttca 14737829  T
Q  120 ttggtgtga 128  Q
    |||||||||    
T  14737830 ttggtgtga 14737838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 14742589 - 14742697
Alignment:
Q  22 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 119  Q
    |||||||||||||||||||| |||  |||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  14742589 tatacactagtctagggctgttttgttgttgtatgcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattgtttatttca 14742688  T
Q  120 ttggtgtga 128  Q
    |||||||||    
T  14742689 ttggtgtga 14742697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 22010850 - 22010958
Alignment:
Q  22 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 119  Q
    |||||||| ||||||||| | |||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22010850 tatacacttgtctagggcggctttgttgttgtttgcttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 22010949  T
Q  120 ttggtgtga 128  Q
    |||||||||    
T  22010950 ttggtgtga 22010958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 80; E-Value: 7e-37
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 6438431 - 6438324
Alignment:
Q  22 tatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcat 120  Q
    ||||||||||  |||||||| || ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6438431 tatacactagcttagggctgtttgttgttgtttgcttggaagccattggttctcattgattaccactatcacttgctccacacatcattgtttatttcat 6438332  T
Q  121 tggtgtga 128  Q
    ||||||||    
T  6438331 tggtgtga 6438324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 6e-31
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 28184436 - 28184325
Alignment:
Q  22 tatacactagtctagggctggttt--tgttgtttgcttggaaaccattt--gttctcattgattaccactatcacttgctccacacatcatt-gtttatt 116  Q
    |||||||||||||||||||| |||  ||||||||||||||| |||||||  |||||||||||||| |||||||||||||||||||||||||| |||||||    
T  28184436 tatacactagtctagggctgttttgttgttgtttgcttggagaccatttttgttctcattgattatcactatcacttgctccacacatcattggtttatt 28184337  T
Q  117 tcattggtgtga 128  Q
    ||||||||||||    
T  28184336 tcattggtgtga 28184325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 45 - 128
Target Start/End: Original strand, 28155749 - 28155832
Alignment:
Q  45 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 128  Q
    |||||||| ||||| | |||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  28155749 ttgttgttagcttgaagaccatttgctctcattgattatcactatcacttgctccacacatcattgtttattgcattggtgtga 28155832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 24 - 149
Target Start/End: Original strand, 5674934 - 5675057
Alignment:
Q  24 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 121  Q
    |||||||| ||||||||||||||||||||  ||||||| || | ||| | ||| |||||||||||||||  |||||||||||||| ||||||   |||||    
T  5674934 tacactagactagggctggttttgttgttgttgcttgggaaactttt-tactctttgattaccactatcttttgctccacacatctttgttt---tcatt 5675029  T
Q  122 ggtgtgagtttcaaccggaatcacaaca 149  Q
    ||||||||||| ||||||| ||||||||    
T  5675030 ggtgtgagttttaaccggattcacaaca 5675057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 24 - 149
Target Start/End: Original strand, 30125960 - 30126084
Alignment:
Q  24 tacactagtctagggctggttttgttgt---ttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcat 120  Q
    |||||||||||||||||| |||||||||   | ||||||| ||||||||  ||||| ||||| ||||| | ||||||||||||||| ||||||   ||||    
T  30125960 tacactagtctagggctgtttttgttgtagttagcttggagaccatttgg-ctcatagattatcactacctcttgctccacacatctttgttt---tcat 30126055  T
Q  121 tggtgtgagtttcaaccggaatcacaaca 149  Q
    |||||||| ||||||||||| ||||||||    
T  30126056 tggtgtgattttcaaccggattcacaaca 30126084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 45 - 128
Target Start/End: Complemental strand, 6005324 - 6005239
Alignment:
Q  45 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 128  Q
    |||||||| |||||||  |||||||  ||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  6005324 ttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 6005239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 110
Target Start/End: Complemental strand, 5343387 - 5343322
Alignment:
Q  45 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg 110  Q
    |||||||| |||||||  |||||||  ||||| ||||| | |||||||||||||||||||||||||    
T  5343387 ttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattg 5343322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 110
Target Start/End: Original strand, 33330625 - 33330690
Alignment:
Q  45 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg 110  Q
    |||||||| |||||||  |||||||  ||||| ||||| | |||||||||||||||||||||||||    
T  33330625 ttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattg 33330690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 128
Target Start/End: Original strand, 33336122 - 33336207
Alignment:
Q  45 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 128  Q
    |||||||| | |||||  |||||||  ||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  33336122 ttgttgttagtttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 33336207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 128
Target Start/End: Complemental strand, 16838651 - 16838566
Alignment:
Q  45 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 128  Q
    |||||||| ||||| |  |||||||  ||||| ||||| | ||||||||||||||||| |||||| ||||||| ||||||||||||    
T  16838651 ttgttgttagcttgaaggccatttgcactcatagattatctctatcacttgctccacatatcattggtttattctcattggtgtga 16838566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 2e-40; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 22173348 - 22173456
Alignment:
Q  22 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 119  Q
    |||||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  22173348 tatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttca 22173447  T
Q  120 ttggtgtga 128  Q
    |||||||||    
T  22173448 ttggtgtga 22173456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 24 - 151
Target Start/End: Complemental strand, 7167174 - 7167049
Alignment:
Q  24 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 121  Q
    |||||||||||||||||| ||||||||||  |||||||||||||||| | ||||| ||||||||||||| ||||||||||||||| ||||||  ||||||    
T  7167174 tacactagtctagggctg-ttttgttgttgttgcttggaaaccattt-tgctcatagattaccactatctcttgctccacacatctttgttt--ttcatt 7167079  T
Q  122 ggtgtgagtttcaaccggaatcacaacaga 151  Q
    ||||||||||||||||||| ||||||||||    
T  7167078 ggtgtgagtttcaaccggattcacaacaga 7167049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 4e-26
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 18656363 - 18656256
Alignment:
Q  22 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 119  Q
    ||||||||||  |||||||| |||  ||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||    
T  18656363 tatacactagcttagggctgttttgttgttgttagcttggagaccatttgttctcattgattaccaccatcacttgctccacacatcattgtat-tttca 18656265  T
Q  120 ttggtgtga 128  Q
    |||||||||    
T  18656264 ttggtgtga 18656256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 4e-23
Query Start/End: Original strand, 24 - 149
Target Start/End: Original strand, 2671752 - 2671876
Alignment:
Q  24 tacactagtctagggctggttttgttgtt---tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcat 120  Q
    |||||||| ||||||||| ||||||||||   |||||||| ||||||||  ||||| ||||||||||||| ||||||||||||||| ||||   ||||||    
T  2671752 tacactagactagggctgtttttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttgt---tttcat 2671847  T
Q  121 tggtgtgagtttcaaccggaatcacaaca 149  Q
    |||||||||||| ||||||| ||||||||    
T  2671848 tggtgtgagttttaaccggattcacaaca 2671876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 46 - 149
Target Start/End: Original strand, 40372986 - 40373085
Alignment:
Q  46 tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcac 145  Q
    ||||||||||||||||||||||| | | ||||||||||||||||| ||||||||||||| | ||||   |||||||||||||||||| ||||||| ||||    
T  40372986 tgttgtttgcttggaaaccattt-tgcccattgattaccactatctcttgctccacacacctttgt---tttcattggtgtgagttttaaccggattcac 40373081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 24 - 150
Target Start/End: Complemental strand, 8477295 - 8477170
Alignment:
Q  24 tacactagtctagggctggttttgttgt--ttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 121  Q
    ||||||||||||||||||||||||||||  |||||||| || | ||| | ||| |||||||||||||||  |||||||||||||| ||||   |||||||    
T  8477295 tacactagtctagggctggttttgttgttgttgcttgggaaac-tttttactctttgattaccactatcttttgctccacacatctttgt---tttcatt 8477200  T
Q  122 ggtgtgagtttca-accggaatcacaacag 150  Q
    ||||||||||| | |||||| |||||||||    
T  8477199 ggtgtgagttttataccggattcacaacag 8477170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 9e-18
Query Start/End: Original strand, 22 - 149
Target Start/End: Original strand, 28504020 - 28504145
Alignment:
Q  22 tatacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 119  Q
    |||||||||||| ||||||| ||||||||||  |||||||||||||||| ||||||| ||||| ||||| |  ||||||||||||||||||||   ||||    
T  28504020 tatacactagtcaagggctg-ttttgttgttgttgcttggaaaccattt-ttctcatagattatcactaccttttgctccacacatcattgtt--attca 28504115  T
Q  120 ttggtgtgagtttcaaccggaatcacaaca 149  Q
    ||||||||||||   |||||| ||||||||    
T  28504116 ttggtgtgagttaagaccggattcacaaca 28504145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 45 - 149
Target Start/End: Original strand, 8739254 - 8739354
Alignment:
Q  45 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatca 144  Q
    ||||| |||||||||||||||||||  ||||| ||||||||||||  ||||||||||||||| ||||   |||||||||||||||| ||||||| | |||    
T  8739254 ttgttatttgcttggaaaccatttga-ctcatagattaccactatttcttgctccacacatctttgt---tttcattggtgtgagtctcaaccgaattca 8739349  T
Q  145 caaca 149  Q
    |||||    
T  8739350 caaca 8739354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 45 - 149
Target Start/End: Original strand, 9091492 - 9091592
Alignment:
Q  45 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatca 144  Q
    ||||| |||||||||||||||||||  ||||| ||||||||||||  ||||||||||||||| ||||   |||||||||||||||| ||||||| | |||    
T  9091492 ttgttatttgcttggaaaccatttga-ctcatagattaccactatttcttgctccacacatctttgt---tttcattggtgtgagtctcaaccgaattca 9091587  T
Q  145 caaca 149  Q
    |||||    
T  9091588 caaca 9091592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 45 - 128
Target Start/End: Complemental strand, 8512122 - 8512037
Alignment:
Q  45 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 128  Q
    |||||||| |||||||| ||||||| |||||| ||||| | ||||||||||||||||||||||||| |||||| ||||||||||||    
T  8512122 ttgttgttagcttggaagccatttgctctcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtga 8512037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 45 - 128
Target Start/End: Complemental strand, 8517002 - 8516917
Alignment:
Q  45 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 128  Q
    |||||||| |||||||| ||||||| |||||| ||||| | ||||||||||||||||||||||||| |||||| ||||||||||||    
T  8517002 ttgttgttagcttggaagccatttgctctcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtga 8516917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 45 - 128
Target Start/End: Original strand, 2677266 - 2677351
Alignment:
Q  45 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 128  Q
    |||||||| |||||||  ||||||| |||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  2677266 ttgttgttagcttggaggccatttgctctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 2677351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 45 - 128
Target Start/End: Original strand, 2673110 - 2673195
Alignment:
Q  45 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 128  Q
    |||||||| |||||||  ||||||  |||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  2673110 ttgttgttagcttggaggccatttactctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 2673195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 45 - 128
Target Start/End: Complemental strand, 10207840 - 10207755
Alignment:
Q  45 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 128  Q
    |||||||| |||||||  |||||||  ||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  10207840 ttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 10207755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 476 - 526
Target Start/End: Complemental strand, 14667294 - 14667244
Alignment:
Q  476 aataataacggcaccagaagaatgagcgaaggtgttgggcattgtaattta 526  Q
    |||||||||| | |||||||||||||  |||||||| ||||||||||||||    
T  14667294 aataataacgccgccagaagaatgaggaaaggtgttaggcattgtaattta 14667244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 4e-38; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 44312777 - 44312885
Alignment:
Q  22 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 119  Q
    |||||||| ||||||||| | |||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44312777 tatacacttgtctagggcggctttgttgttgtttgcttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 44312876  T
Q  120 ttggtgtga 128  Q
    |||||||||    
T  44312877 ttggtgtga 44312885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 2e-34
Query Start/End: Original strand, 24 - 151
Target Start/End: Original strand, 11099093 - 11099219
Alignment:
Q  24 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 121  Q
    |||||||||||||||||| ||||||||||  ||||||||||||||||  | |||||||||||||||||| ||||||||||||||| |||||  |||||||    
T  11099093 tacactagtctagggctgtttttgttgttgttgcttggaaaccattttgt-tcattgattaccactatctcttgctccacacatctttgtt--tttcatt 11099189  T
Q  122 ggtgtgagtttcaaccggaatcacaacaga 151  Q
    ||||||||||||||||||| ||||||||||    
T  11099190 ggtgtgagtttcaaccggattcacaacaga 11099219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 2e-31
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 32246716 - 32246607
Alignment:
Q  22 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttc 118  Q
    |||||||||||||||| ||| |||  ||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  32246716 tatacactagtctaggactgttttgttgttgttagcttggagaccatttgttctcatagattaccactatcacttgctccacacatcattggtttatttc 32246617  T
Q  119 attggtgtga 128  Q
    ||||||||||    
T  32246616 attggtgtga 32246607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 1e-26
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 39812141 - 39812250
Alignment:
Q  22 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttc 118  Q
    ||||||||||  |||||||| |||  ||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||    
T  39812141 tatacactagcttagggctgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatctttggtttatttc 39812240  T
Q  119 attggtgtga 128  Q
    ||||||||||    
T  39812241 attggtgtga 39812250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 4e-23
Query Start/End: Original strand, 24 - 149
Target Start/End: Complemental strand, 14291419 - 14291295
Alignment:
Q  24 tacactagtctagggctggttttgttgtt---tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcat 120  Q
    |||| ||||||||||||| ||||||||||   |||||||||||||||| | | ||||||||||||||||| ||||||||||||| | ||||   ||||||    
T  14291419 tacattagtctagggctgtttttgttgttgtttgcttggaaaccattt-tgcccattgattaccactatctcttgctccacacacctttgt---tttcat 14291324  T
Q  121 tggtgtgagtttcaaccggaatcacaaca 149  Q
    |||||||||||| ||||||| ||||||||    
T  14291323 tggtgtgagttttaaccggattcacaaca 14291295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 9e-21
Query Start/End: Original strand, 24 - 149
Target Start/End: Original strand, 9296567 - 9296691
Alignment:
Q  24 tacactagtctagggctggttttgttgtt---tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcat 120  Q
    |||||||| ||||||||| ||||||||||   |||||||||||||||| | ||||| ||||||||||| |  |||||||||||||| ||||||   ||||    
T  9296567 tacactagactagggctgtttttgttgttgtttgcttggaaaccattt-tgctcatagattaccactaccttttgctccacacatctttgttt---tcat 9296662  T
Q  121 tggtgtgagtttcaaccggaatcacaaca 149  Q
    |||||||||||| ||||||| ||||||||    
T  9296663 tggtgtgagttttaaccggattcacaaca 9296691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 45 - 128
Target Start/End: Complemental strand, 19344327 - 19344243
Alignment:
Q  45 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 128  Q
    |||||||| |||||||  ||||||| |||||| ||||||||||||| ||||||||||||||| || |||||||||||||||||||    
T  19344327 ttgttgttagcttggaggccatttgctctcatagattaccactatctcttgctccacacatctttggtttatttcattggtgtga 19344243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 45 - 128
Target Start/End: Complemental strand, 19349185 - 19349101
Alignment:
Q  45 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 128  Q
    |||||||| |||||||  ||||||| |||||| ||||||||||||| ||||||||||||||| || |||||||||||||||||||    
T  19349185 ttgttgttagcttggaggccatttgctctcatagattaccactatctcttgctccacacatctttggtttatttcattggtgtga 19349101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 24 - 149
Target Start/End: Complemental strand, 25403565 - 25403443
Alignment:
Q  24 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 121  Q
    |||||||||||||||||| ||||||||||  |||||||| ||  |||   | ||| ||||||||||  |  |||||||||||||| |||||||   ||||    
T  25403565 tacactagtctagggctgtttttgttgttgttgcttggagacacttta--cacatagattaccacttccttttgctccacacatctttgttta---catt 25403471  T
Q  122 ggtgtgagtttcaaccggaatcacaaca 149  Q
    ||||||||||||||||||| ||||||||    
T  25403470 ggtgtgagtttcaaccggattcacaaca 25403443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 149
Target Start/End: Complemental strand, 25398427 - 25398305
Alignment:
Q  24 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 121  Q
    |||||||||||||||||| ||||||||||  |||||||| ||  |||   | ||| ||||||||||  |  |||||||||||||| |||||||   ||||    
T  25398427 tacactagtctagggctgtttttgttgttgttgcttggagacacttta--cacatagattaccacttccttttgctccacacatctttgttta---catt 25398333  T
Q  122 ggtgtgagtttcaaccggaatcacaaca 149  Q
    |||||||||||||||| || ||||||||    
T  25398332 ggtgtgagtttcaaccagattcacaaca 25398305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 3e-30; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 3e-30
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 25445244 - 25445352
Alignment:
Q  22 tatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttca 119  Q
    ||||||||||  |||||||| || ||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||    
T  25445244 tatacactagcttagggctgtttgttgttgtttgcttggaagccatttgttctcattgattatcactatcgcttgctccacacatcattggtttatttca 25445343  T
Q  120 ttggtgtga 128  Q
    |||||||||    
T  25445344 ttggtgtga 25445352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 3e-30
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 39445430 - 39445322
Alignment:
Q  22 tatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttca 119  Q
    ||||||||||  |||||||| || ||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||    
T  39445430 tatacactagcttagggctgtttgttgttgtttgcttggaagccatttgttcacattgattatcactatcacttgctccacacatcattggtttatttca 39445331  T
Q  120 ttggtgtga 128  Q
    |||||||||    
T  39445330 ttggtgtga 39445322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 3e-30
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 44024027 - 44024135
Alignment:
Q  22 tatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttca 119  Q
    ||||||||||  |||||||| || ||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||    
T  44024027 tatacactagcttagggctgtttgttgttgtttgcttggaagccatttgttctcattgattatcactatcagttgctccacacatcattggtttatttca 44024126  T
Q  120 ttggtgtga 128  Q
    |||||||||    
T  44024127 ttggtgtga 44024135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 50 - 128
Target Start/End: Complemental strand, 41386650 - 41386571
Alignment:
Q  50 gtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 128  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  41386650 gtttgcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 41386571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 2e-25
Query Start/End: Original strand, 45 - 128
Target Start/End: Complemental strand, 41398144 - 41398060
Alignment:
Q  45 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 128  Q
    |||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||    
T  41398144 ttgttgtttgcttggagaccatatgttctcattgattatcactatcacttgctccacacataattggtttatttcattggtgtga 41398060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 4e-23
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 1055166 - 1055274
Alignment:
Q  22 tatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttca 119  Q
    ||||||||||  |||||||| || |||||||  ||||||||  ||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||    
T  1055166 tatacactagcttagggctgtttgttgttgtaagcttggaagacatttgttcacattgattatcactatcacttgctccacacatcattggtttatttca 1055265  T
Q  120 ttggtgtga 128  Q
    |||||||||    
T  1055266 ttggtgtga 1055274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 45 - 110
Target Start/End: Original strand, 43988644 - 43988709
Alignment:
Q  45 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg 110  Q
    |||||||| |||||||| ||||||| |||||| ||||| | |||||||||||||||||||||||||    
T  43988644 ttgttgttagcttggaagccatttgctctcatagattatctctatcacttgctccacacatcattg 43988709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 52 - 113
Target Start/End: Original strand, 24787564 - 24787624
Alignment:
Q  52 ttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgttt 113  Q
    ||||||||||||||||| | |||||| |||||||||||| ||||||||||||||| ||||||    
T  24787564 ttgcttggaaaccattt-tgctcatttattaccactatctcttgctccacacatctttgttt 24787624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 149
Target Start/End: Original strand, 24202932 - 24203054
Alignment:
Q  24 tacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 121  Q
    ||||||||| |||||||| |||  ||||||||||||||| ||  |||   | ||| ||||||||||  |  |||||||||||||| ||||||   |||||    
T  24202932 tacactagtttagggctgttttgttgttgtttgcttggagacacttta--cacatagattaccactcccttttgctccacacatctttgttt---tcatt 24203026  T
Q  122 ggtgtgagtttcaaccggaatcacaaca 149  Q
    ||||||||||| ||||||| ||||||||    
T  24203027 ggtgtgagttttaaccggattcacaaca 24203054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 476 - 526
Target Start/End: Complemental strand, 1012544 - 1012494
Alignment:
Q  476 aataataacggcaccagaagaatgagcgaaggtgttgggcattgtaattta 526  Q
    |||||||||| | |||||||||||||  |||||||| ||||||||||||||    
T  1012544 aataataacgccgccagaagaatgaggaaaggtgttaggcattgtaattta 1012494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 19359079 - 19359132
Alignment:
Q  93 ttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 149  Q
    |||||||||||||| |||||||   ||||||||||||||| ||||||| ||||||||    
T  19359079 ttgctccacacatctttgttta---cattggtgtgagttttaaccggattcacaaca 19359132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 65; Significance: 6e-28; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 65; E-Value: 6e-28
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 293 - 185
Alignment:
Q  22 tatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttca 119  Q
    ||||||||||  |||||||| || ||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||| || ||||||||||    
T  293 tatacactagcttagggctgtttgttgttgtttgcttggaagccatttgttctcattgattatcaccatcacttgctccacacatctttggtttatttca 194  T
Q  120 ttggtgtga 128  Q
    |||||||||    
T  193 ttggtgtga 185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 64; Significance: 2e-27; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 50 - 128
Target Start/End: Original strand, 34132 - 34211
Alignment:
Q  50 gtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 128  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  34132 gtttgcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 34211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355 (Bit Score: 61; Significance: 2e-25; HSPs: 2)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 61; E-Value: 2e-25
Query Start/End: Original strand, 45 - 128
Target Start/End: Original strand, 9818 - 9902
Alignment:
Q  45 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 128  Q
    |||||||||| ||||| |||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  9818 ttgttgtttggttggagaccatttgctctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 9902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355; HSP #2
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 40 - 143
Alignment:
Q  22 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttc 118  Q
    ||||||||||  |||||||| |||  |||||||| |||||| |||||||| ||||||||||||      ||||||||||||||||||||| ||||||||     
T  40 tatacactagcttagggctgttttgttgttgtttacttggagaccatttgctctcattgatta------tcacttgctccacacatcattggtttattta 133  T
Q  119 attggtgtga 128  Q
    ||||||||||    
T  134 attggtgtga 143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0978 (Bit Score: 51; Significance: 1e-19; HSPs: 1)
Name: scaffold0978
Description:

Target: scaffold0978; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 26 - 150
Target Start/End: Original strand, 404 - 528
Alignment:
Q  26 cactagtctagggctggtttt-gttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattg 122  Q
    ||||||| |||||||| |||| ||||||  |||||||||||||||| | ||||| ||||||||||||| ||||||||||||||| ||||   ||||||||    
T  404 cactagtttagggctgttttttgttgttgttgcttggaaaccatttttgctcatagattaccactatctcttgctccacacatctttgt---tttcattg 500  T
Q  123 gtgtgagtttcaaccggaatcacaacag 150  Q
    |||||||||| ||  ||| |||||||||    
T  501 gtgtgagttttaaatggattcacaacag 528  T

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Target: scaffold0479 (Bit Score: 43; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 67 - 128
Target Start/End: Complemental strand, 13233 - 13171
Alignment:
Q  67 ttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 128  Q
    |||||||||||||||| ||||||||||||||||||| ||| || |||||||||||||||||||    
T  13233 ttgttctcattgattatcactatcacttgctccacatatctttggtttatttcattggtgtga 13171  T

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Target: scaffold0197 (Bit Score: 38; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 45 - 128
Target Start/End: Original strand, 19343 - 19428
Alignment:
Q  45 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 128  Q
    |||||||| |||||||  |||||||  ||||| ||||| | ||||||||||||||||||||||||| |||||| ||||||||||||    
T  19343 ttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtga 19428  T

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Target: scaffold0028 (Bit Score: 38; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 45 - 128
Target Start/End: Original strand, 149134 - 149219
Alignment:
Q  45 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 128  Q
    |||||||| |||||||  |||||||  ||||| ||||| | ||||||||||||||||||||||||| |||||| ||||||||||||    
T  149134 ttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtga 149219  T

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Target: scaffold0259 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 128
Target Start/End: Original strand, 2429 - 2514
Alignment:
Q  45 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 128  Q
    |||||||| |||||||  |||||||  ||||| ||||| |  |||||||||||||||||||||||| |||||| ||||||||||||    
T  2429 ttgttgttagcttggaggccatttgcactcatggattatctttatcacttgctccacacatcattgatttattctcattggtgtga 2514  T

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Target: scaffold0188 (Bit Score: 33; Significance: 0.000000008; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 149
Target Start/End: Original strand, 24208 - 24331
Alignment:
Q  24 tacactagtctagggctggtttt-gttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcat 120  Q
    ||||||||||||||||||||||| ||||||  |||||||| ||  |||   | ||| ||||||||||  |  |||||||||||||| |||||||   |||    
T  24208 tacactagtctagggctggtttttgttgttgttgcttggagacacttta--cacatagattaccacttccttttgctccacacatctttgttta---cat 24302  T
Q  121 tggtgtgagtttcaaccggaatcacaaca 149  Q
    |||||||||||| ||||||| ||||||||    
T  24303 tggtgtgagttttaaccggattcacaaca 24331  T

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Target: scaffold0087 (Bit Score: 30; Significance: 0.0000005; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 149
Target Start/End: Original strand, 44174 - 44247
Alignment:
Q  74 cattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaa-tcacaaca 149  Q
    |||||||||||||| ||  |||||||||||||| ||||||  ||||||||||||| | |||||||||| ||||||||    
T  44174 cattgattaccact-tcctttgctccacacatctttgttt--ttcattggtgtgattatcaaccggaactcacaaca 44247  T

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