View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12180_low_4 (Length: 532)
Name: NF12180_low_4
Description: NF12180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12180_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 487; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 19 - 521
Target Start/End: Complemental strand, 4131278 - 4130777
Alignment:
| Q |
19 |
cattatgcgggaaatatacaaataagaaagaaatcataacagataataatcacaaacattgtatgattgtataaaagggttgatgttggtatttagaata |
118 |
Q |
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| T |
4131278 |
cattatgcaggaaatatacaaataagaaagaaatca-aacagataataatcacaaacattgtatgattgtataaaagggttgatgttggtatttagaata |
4131180 |
T |
|
| Q |
119 |
aatgtgaggtccaccttctcgcaccctcaatatttttggccggaaggtatggaagtcaaggaattgaaccgaaggaaaatggtgatggtgggtcagggac |
218 |
Q |
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| T |
4131179 |
aatgtgaggtccaccttctcgcaccctcaatatttttggctggaaggtatggaagtcaaggaattgaaccgaaggaaaatggtgatggtgggtcagggac |
4131080 |
T |
|
| Q |
219 |
tttaaccacatcttctagcatttgcatgaccatcctcattgttggcctcatttcaggatgttcttgaatgcaccaaattgctatctttatccacttttct |
318 |
Q |
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| T |
4131079 |
tttaaccacatcttctagcatttgcatgaccatcctcattgttggcctcatttcaggatgttcttgaatgcaccaaattgctatctttatccacttttct |
4130980 |
T |
|
| Q |
319 |
aacctgtcaatgtcatccaaggcctcttgatcattctccaccaaagcatctattctcccttccatataacaatcacaagcccaatctgtcaaaattgcct |
418 |
Q |
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| T |
4130979 |
aacctgtcaatgtcatccaaggcctcttgatcattctccaccaaagcatctattctcccttccatataacaatcacaagcccaatctgtcaaaattgcct |
4130880 |
T |
|
| Q |
419 |
tctcttcctcccccgactccatcagcaccacactttttctgcagcaaacaatttctaacaacatggcaccaaagctgtaaacatccactttagccgtcac |
518 |
Q |
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| T |
4130879 |
tctcttcctcccccgactccatcagcaccacactttttctgcagcaaacaatttctaacaacatggcaccaaagctgtaaacatccactttagccgtcac |
4130780 |
T |
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| Q |
519 |
agg |
521 |
Q |
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| T |
4130779 |
agg |
4130777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 58 - 518
Target Start/End: Complemental strand, 4108050 - 4107599
Alignment:
| Q |
58 |
cagataataatcacaaacattgtatgattgtataaaagggttgatgttggtatttagaataaatgtgaggtccaccttctcgcaccctcaatatttttgg |
157 |
Q |
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| T |
4108050 |
cagataataatcataaacattgtatgattgtataaaagtgtcgatgttggtatttagaacaaatatgagatcaaccttctcgcacgctcgatagttttgc |
4107951 |
T |
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| Q |
158 |
ccggaaggtatggaagtcaaggaattgaaccgaaggaaaatggtgatggtgggtcagggactttaaccacatcttctagcatttgcatgaccatcctcat |
257 |
Q |
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| T |
4107950 |
c---------tggaagtcaaggaatcaaactgaaggaaaaaggcgatggtgggttagggacttgaaccacaccttctagcatttgcatgaccatcctcat |
4107860 |
T |
|
| Q |
258 |
tgttggcctcatttcaggatgttcttgaatgcaccaaattgctatctttatccacttttctaacctgtcaatgtcatccaaggcctcttgatcattctcc |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4107859 |
tgttggcctcatttcaggatgttcttgaatgcaccaaattgctatctttatccacttttctaacctgtcaatgtcatccaaggcctcttgatcattctcc |
4107760 |
T |
|
| Q |
358 |
accaaagcatctattctcccttccatataacaatcacaagcccaatctgtcaaaattgccttctcttcctcccccgactccatcagcaccacactttttc |
457 |
Q |
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| T |
4107759 |
accaaagcatctattctcccttccatataacaatcacaggcccaatctgtcaaaattgctttttcttcctcccctgactccatcagcaccacactttttc |
4107660 |
T |
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| Q |
458 |
tgcagcaaacaatttctaacaacatggcaccaaagctgtaaacatccactttagccgtcac |
518 |
Q |
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| T |
4107659 |
tgcagcaaacaatttccaacaacatggcaccaaagctgtaaacatccactttagccgtcac |
4107599 |
T |
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