View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12180_low_5 (Length: 530)

Name: NF12180_low_5
Description: NF12180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12180_low_5
NF12180_low_5
[»] chr2 (8 HSPs)
chr2 (50-279)||(31077719-31077948)
chr2 (314-511)||(31078007-31078206)
chr2 (407-507)||(22319667-22319767)
chr2 (52-105)||(26829334-26829387)
chr2 (73-103)||(32677839-32677869)
chr2 (61-98)||(38716205-38716242)
chr2 (70-98)||(9051283-9051311)
chr2 (73-105)||(25884201-25884233)
[»] chr6 (5 HSPs)
chr6 (146-279)||(23949902-23950035)
chr6 (136-279)||(23949198-23949341)
chr6 (70-100)||(18791378-18791408)
chr6 (70-100)||(31210814-31210844)
chr6 (73-102)||(8149158-8149187)
[»] chr1 (2 HSPs)
chr1 (355-507)||(21878754-21878906)
chr1 (73-105)||(51719369-51719401)
[»] chr7 (10 HSPs)
chr7 (355-507)||(22963475-22963626)
chr7 (355-507)||(22971719-22971870)
chr7 (70-105)||(20636639-20636674)
chr7 (70-105)||(20638511-20638546)
chr7 (55-98)||(20765989-20766032)
chr7 (52-99)||(33237418-33237465)
chr7 (55-100)||(43517166-43517211)
chr7 (69-105)||(17305783-17305819)
chr7 (70-98)||(24597771-24597799)
chr7 (52-100)||(39181939-39181987)
[»] chr3 (6 HSPs)
chr3 (355-507)||(49601825-49601976)
chr3 (70-105)||(13080914-13080949)
chr3 (70-105)||(25179598-25179633)
chr3 (73-105)||(10743432-10743464)
chr3 (70-98)||(30155399-30155427)
chr3 (52-100)||(36311154-36311202)
[»] chr4 (6 HSPs)
chr4 (70-105)||(35475311-35475346)
chr4 (70-105)||(41877273-41877308)
chr4 (70-100)||(4098910-4098940)
chr4 (52-100)||(3927668-3927716)
chr4 (70-98)||(24626242-24626270)
chr4 (70-98)||(52838251-52838279)
[»] chr8 (2 HSPs)
chr8 (69-105)||(4519116-4519152)
chr8 (70-99)||(5192526-5192555)
[»] scaffold1891 (1 HSPs)
scaffold1891 (55-98)||(828-871)
[»] scaffold0406 (1 HSPs)
scaffold0406 (70-98)||(2017-2045)
[»] chr5 (1 HSPs)
chr5 (70-98)||(18695024-18695052)


Alignment Details
Target: chr2 (Bit Score: 130; Significance: 4e-67; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 50 - 279
Target Start/End: Original strand, 31077719 - 31077948
Alignment:
Q  50 aactaaagtgtacttttgatcctctaagttttaaaatgttgcgattttggctccctgttnnnnnnnnnnnnnnnntcgcctcccataaaatcagagcctt 149  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||                | |||||||||||||||| ||||||    
T  31077719 aactaaagtgtacttttgaccctctaagttttaaaatgttgtgattttgactccctgttaaaaaaattaaaaatttggcctcccataaaatcaaagcctt 31077818  T
Q  150 ccgtgcataaaatccgacagtgcaatttaattttccacattttgcacctccggaatgtaactaccagttgcacattttggaatttccacatttaacacat 249  Q
    || ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||| |||||||||||||    
T  31077819 ccatgcataaaatccggcggtgcaatttaattttccacattttgcacctccggaatgtaactaccggatgcacattttgaaatttctacatttaacacat 31077918  T
Q  250 acggcagttaaaaacgtaagcaactgaata 279  Q
    ||||||||||||||||||||| ||||||||    
T  31077919 acggcagttaaaaacgtaagcgactgaata 31077948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 314 - 511
Target Start/End: Original strand, 31078007 - 31078206
Alignment:
Q  314 aaaaataaaacgctgatcatttaacagaaactacaccttaaacaaattagctattagattaaaaaatgttgcaatgtcataatgnnnnnnnnn--ctaat 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||            |||||    
T  31078007 aaaaataaaacgctgatcatttaacagaaactacaccttaaacaaattagctactagattaaaaaatgttgcaaagtcataattttttttttcttctaat 31078106  T
Q  412 gtcacaagagctaatatgagttgatgagcaaaacaaagaatatagaaagcagaaaaattttctttcaatatcaagcttttgagaccattatattcatctc 511  Q
    ||||||||||||||||||||||||| ||||||| || ||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  31078107 gtcacaagagctaatatgagttgattagcaaaataatgaatataaaaagctgaacaattttctttcaatatcaagcttttgagaccattatattcatctc 31078206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 407 - 507
Target Start/End: Original strand, 22319667 - 22319767
Alignment:
Q  407 ctaatgtcacaagagctaatatgagttgatgagcaaaacaaagaatatagaaagcagaaaaattttctttcaatatcaagcttttgagaccattatattc 506  Q
    ||||||||||||||||||||  || |||||||||||||||| |||||||||||||| || |||||||||||||||||||| |||| ||||||||||||||    
T  22319667 ctaatgtcacaagagctaattggacttgatgagcaaaacaatgaatatagaaagcacaacaattttctttcaatatcaagattttaagaccattatattc 22319766  T
Q  507 a 507  Q
    |    
T  22319767 a 22319767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 52 - 105
Target Start/End: Complemental strand, 26829387 - 26829334
Alignment:
Q  52 ctaaagtgtacttttgatcctctaagttttaaaatgttgcgattttggctccct 105  Q
    |||||||| |||||| ||||  ||||||||||||||||||||||||||| ||||    
T  26829387 ctaaagtgcacttttcatcccttaagttttaaaatgttgcgattttggccccct 26829334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 73 - 103
Target Start/End: Original strand, 32677839 - 32677869
Alignment:
Q  73 ctaagttttaaaatgttgcgattttggctcc 103  Q
    |||||||||||||||||||||||||||||||    
T  32677839 ctaagttttaaaatgttgcgattttggctcc 32677869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 38716205 - 38716242
Alignment:
Q  61 acttttgatcctctaagttttaaaatgttgcgattttg 98  Q
    |||||| | |||||||||||||||||||||||||||||    
T  38716205 acttttcaccctctaagttttaaaatgttgcgattttg 38716242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 98
Target Start/End: Complemental strand, 9051311 - 9051283
Alignment:
Q  70 cctctaagttttaaaatgttgcgattttg 98  Q
    |||||||||||||||||||||||||||||    
T  9051311 cctctaagttttaaaatgttgcgattttg 9051283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 105
Target Start/End: Original strand, 25884201 - 25884233
Alignment:
Q  73 ctaagttttaaaatgttgcgattttggctccct 105  Q
    |||||||||||||||||||||||||||| ||||    
T  25884201 ctaagttttaaaatgttgcgattttggccccct 25884233  T

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Target: chr6 (Bit Score: 90; Significance: 3e-43; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 146 - 279
Target Start/End: Complemental strand, 23950035 - 23949902
Alignment:
Q  146 ccttccgtgcataaaatccgacagtgcaatttaattttccacattttgcacctccggaatgtaactaccagttgcacattttggaatttccacatttaac 245  Q
    ||||| || |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  23950035 ccttcggtacataaaatccggtagtgcaatttaattttccacattttgcacctccggaatgtaactaccagatgcacattttggaatttccacatttaac 23949936  T
Q  246 acatacggcagttaaaaacgtaagcaactgaata 279  Q
    |||||| | ||||||||   ||||| ||||||||    
T  23949935 acatacagtagttaaaattataagccactgaata 23949902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 136 - 279
Target Start/End: Original strand, 23949198 - 23949341
Alignment:
Q  136 aaaatcagagccttccgtgcataaaatccgacagtgcaatttaattttccacattttgcacctccggaatgtaactaccagttgcacattttggaatttc 235  Q
    ||||||||||||||| |||||||||||||   ||| |||||||||||| ||||||||||||||||||||| |||||||| | | ||||||||||||||||    
T  23949198 aaaatcagagccttcggtgcataaaatccagtagttcaatttaatttttcacattttgcacctccggaatataactaccggatacacattttggaatttc 23949297  T
Q  236 cacatttaacacatacggcagttaaaaacgtaagcaactgaata 279  Q
    |||||||||||||||||| |||||||||  ||||| ||||||||    
T  23949298 cacatttaacacatacggtagttaaaaatataagccactgaata 23949341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 100
Target Start/End: Original strand, 18791378 - 18791408
Alignment:
Q  70 cctctaagttttaaaatgttgcgattttggc 100  Q
    |||||||||||||||||||||||||||||||    
T  18791378 cctctaagttttaaaatgttgcgattttggc 18791408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 100
Target Start/End: Original strand, 31210814 - 31210844
Alignment:
Q  70 cctctaagttttaaaatgttgcgattttggc 100  Q
    |||||||||||||||||||||||||||||||    
T  31210814 cctctaagttttaaaatgttgcgattttggc 31210844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 102
Target Start/End: Complemental strand, 8149187 - 8149158
Alignment:
Q  73 ctaagttttaaaatgttgcgattttggctc 102  Q
    ||||||||||||||||||||||||||||||    
T  8149187 ctaagttttaaaatgttgcgattttggctc 8149158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 7e-41; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 355 - 507
Target Start/End: Original strand, 21878754 - 21878906
Alignment:
Q  355 acaaattagctattagattaaaaaatgttgcaatgtcataatgnnnnnnnnnctaatgtcacaagagctaatatgagttgatgagcaaaacaaagaatat 454  Q
    |||||||||||| | |||||||||||| |||||||||| |||          ||||||||||||||||||||  ||||||||||||||||||| ||||||    
T  21878754 acaaattagctacttgattaaaaaatgatgcaatgtcagaattgtttttttgctaatgtcacaagagctaattggagttgatgagcaaaacaatgaatat 21878853  T
Q  455 agaaagcagaaaaattttctttcaatatcaagcttttgagaccattatattca 507  Q
    | ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  21878854 aaaaagcagaacaattttctttcaatatcaagcttttgagaccattatattca 21878906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 105
Target Start/End: Complemental strand, 51719401 - 51719369
Alignment:
Q  73 ctaagttttaaaatgttgcgattttggctccct 105  Q
    |||||||| ||||||||||||||||||||||||    
T  51719401 ctaagtttcaaaatgttgcgattttggctccct 51719369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 3e-40; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 355 - 507
Target Start/End: Complemental strand, 22963626 - 22963475
Alignment:
Q  355 acaaattagctattagattaaaaaatgttgcaatgtcataatgnnnnnnnnnctaatgtcacaagagctaatatgagttgatgagcaaaacaaagaatat 454  Q
    |||||||||||| | |||||||||||| |||||||||| ||||         ||||||||||||||||||||  ||||||||||||||||||| ||||||    
T  22963626 acaaattagctacttgattaaaaaatgatgcaatgtcagaatgtttttttg-ctaatgtcacaagagctaattggagttgatgagcaaaacaatgaatat 22963528  T
Q  455 agaaagcagaaaaattttctttcaatatcaagcttttgagaccattatattca 507  Q
    | ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  22963527 aaaaagcagaacaattttctttcaatatcaagcttttgagaccattatattca 22963475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 355 - 507
Target Start/End: Complemental strand, 22971870 - 22971719
Alignment:
Q  355 acaaattagctattagattaaaaaatgttgcaatgtcataatgnnnnnnnnnctaatgtcacaagagctaatatgagttgatgagcaaaacaaagaatat 454  Q
    |||||||||||| | |||||||||||| |||||||||| ||||         ||||||||||||||||||||  ||||||||||||||||||| ||||||    
T  22971870 acaaattagctacttgattaaaaaatgatgcaatgtcagaatgtttttttg-ctaatgtcacaagagctaattggagttgatgagcaaaacaatgaatat 22971772  T
Q  455 agaaagcagaaaaattttctttcaatatcaagcttttgagaccattatattca 507  Q
    | ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  22971771 aaaaagcagaacaattttctttcaatatcaagcttttgagaccattatattca 22971719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 105
Target Start/End: Original strand, 20636639 - 20636674
Alignment:
Q  70 cctctaagttttaaaatgttgcgattttggctccct 105  Q
    ||||||||||||||||||||||||||||||| ||||    
T  20636639 cctctaagttttaaaatgttgcgattttggccccct 20636674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 105
Target Start/End: Original strand, 20638511 - 20638546
Alignment:
Q  70 cctctaagttttaaaatgttgcgattttggctccct 105  Q
    ||||||||||||||||||||||||||||||| ||||    
T  20638511 cctctaagttttaaaatgttgcgattttggccccct 20638546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 98
Target Start/End: Original strand, 20765989 - 20766032
Alignment:
Q  55 aagtgtacttttgatcctctaagttttaaaatgttgcgattttg 98  Q
    ||||||||||||| ||| |||| |||||||||||||||||||||    
T  20765989 aagtgtacttttggtccactaaattttaaaatgttgcgattttg 20766032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 33237418 - 33237465
Alignment:
Q  52 ctaaagtgtacttttgatcctctaagttttaaaatgttgcgattttgg 99  Q
    ||||| ||||||||| | ||||||| ||||||||||||||||||||||    
T  33237418 ctaaactgtacttttcaccctctaaattttaaaatgttgcgattttgg 33237465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 100
Target Start/End: Complemental strand, 43517211 - 43517166
Alignment:
Q  55 aagtgtacttttgatcctctaagttttaaaatgttgcgattttggc 100  Q
    ||||| ||||||  ||| ||||||||||||||||||||||||||||    
T  43517211 aagtgcacttttcgtccactaagttttaaaatgttgcgattttggc 43517166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 105
Target Start/End: Original strand, 17305783 - 17305819
Alignment:
Q  69 tcctctaagttttaaaatgttgcgattttggctccct 105  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  17305783 tcctctaagtttcaaaatgttgcgattttggccccct 17305819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 98
Target Start/End: Complemental strand, 24597799 - 24597771
Alignment:
Q  70 cctctaagttttaaaatgttgcgattttg 98  Q
    |||||||||||||||||||||||||||||    
T  24597799 cctctaagttttaaaatgttgcgattttg 24597771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 39181939 - 39181987
Alignment:
Q  52 ctaaagtgtacttttgatcctctaagttttaaaatgttgcgattttggc 100  Q
    ||||| || |||||||  |||| ||||||||||||||||||||||||||    
T  39181939 ctaaactgcacttttggccctccaagttttaaaatgttgcgattttggc 39181987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 7e-38; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 355 - 507
Target Start/End: Original strand, 49601825 - 49601976
Alignment:
Q  355 acaaattagctattagattaaaaaatgttgcaatgtcataatgnnnnnnnnnctaatgtcacaagagctaatatgagttgatgagcaaaacaaagaatat 454  Q
    |||||||||||| | |||||||||||| |||||||||| ||||         ||||||||||||||||||||  ||||||||||||||||||| ||||||    
T  49601825 acaaattagctacttgattaaaaaatgatgcaatgtcagaatgtttttttg-ctaatgtcacaagagctaattggagttgatgagcaaaacaacgaatat 49601923  T
Q  455 agaaagcagaaaaattttctttcaatatcaagcttttgagaccattatattca 507  Q
    | |||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  49601924 aaaaagtagaacaattttctttcaatatcaagcttttgagaccattatattca 49601976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 105
Target Start/End: Original strand, 13080914 - 13080949
Alignment:
Q  70 cctctaagttttaaaatgttgcgattttggctccct 105  Q
    ||||||||||| ||||||||||||||||||||||||    
T  13080914 cctctaagtttcaaaatgttgcgattttggctccct 13080949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 105
Target Start/End: Original strand, 25179598 - 25179633
Alignment:
Q  70 cctctaagttttaaaatgttgcgattttggctccct 105  Q
    ||||||||||||||||||||||||||||||| ||||    
T  25179598 cctctaagttttaaaatgttgcgattttggccccct 25179633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 105
Target Start/End: Original strand, 10743432 - 10743464
Alignment:
Q  73 ctaagttttaaaatgttgcgattttggctccct 105  Q
    |||||||||||||||||||||||||||| ||||    
T  10743432 ctaagttttaaaatgttgcgattttggccccct 10743464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 98
Target Start/End: Complemental strand, 30155427 - 30155399
Alignment:
Q  70 cctctaagttttaaaatgttgcgattttg 98  Q
    |||||||||||||||||||||||||||||    
T  30155427 cctctaagttttaaaatgttgcgattttg 30155399  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 36311154 - 36311202
Alignment:
Q  52 ctaaagtgtacttttgatcctctaagttttaaaatgttgcgattttggc 100  Q
    ||||| || ||||||  ||| ||||||||||||||||||||||||||||    
T  36311154 ctaaactgcacttttcgtcccctaagttttaaaatgttgcgattttggc 36311202  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 70 - 105
Target Start/End: Original strand, 35475311 - 35475346
Alignment:
Q  70 cctctaagttttaaaatgttgcgattttggctccct 105  Q
    ||||||||||||||||||||||||||||||||||||    
T  35475311 cctctaagttttaaaatgttgcgattttggctccct 35475346  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 105
Target Start/End: Complemental strand, 41877308 - 41877273
Alignment:
Q  70 cctctaagttttaaaatgttgcgattttggctccct 105  Q
    ||||||||||| ||||||||||||||||||||||||    
T  41877308 cctctaagtttcaaaatgttgcgattttggctccct 41877273  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 100
Target Start/End: Complemental strand, 4098940 - 4098910
Alignment:
Q  70 cctctaagttttaaaatgttgcgattttggc 100  Q
    |||||||||||||||||||||||||||||||    
T  4098940 cctctaagttttaaaatgttgcgattttggc 4098910  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 3927668 - 3927716
Alignment:
Q  52 ctaaagtgtacttttgatcctctaagttttaaaatgttgcgattttggc 100  Q
    |||||||| ||||||   ||||||| |||||||||||||||||||||||    
T  3927668 ctaaagtgcacttttccccctctaacttttaaaatgttgcgattttggc 3927716  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 98
Target Start/End: Original strand, 24626242 - 24626270
Alignment:
Q  70 cctctaagttttaaaatgttgcgattttg 98  Q
    |||||||||||||||||||||||||||||    
T  24626242 cctctaagttttaaaatgttgcgattttg 24626270  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 98
Target Start/End: Original strand, 52838251 - 52838279
Alignment:
Q  70 cctctaagttttaaaatgttgcgattttg 98  Q
    |||||||||||||||||||||||||||||    
T  52838251 cctctaagttttaaaatgttgcgattttg 52838279  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 105
Target Start/End: Complemental strand, 4519152 - 4519116
Alignment:
Q  69 tcctctaagttttaaaatgttgcgattttggctccct 105  Q
    |||||||||||| ||||||||||||||||||||||||    
T  4519152 tcctctaagtttcaaaatgttgcgattttggctccct 4519116  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 99
Target Start/End: Complemental strand, 5192555 - 5192526
Alignment:
Q  70 cctctaagttttaaaatgttgcgattttgg 99  Q
    ||||||||||||||||||||||||||||||    
T  5192555 cctctaagttttaaaatgttgcgattttgg 5192526  T

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Target: scaffold1891 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1891
Description:

Target: scaffold1891; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 98
Target Start/End: Complemental strand, 871 - 828
Alignment:
Q  55 aagtgtacttttgatcctctaagttttaaaatgttgcgattttg 98  Q
    ||||||||||||| ||| |||| |||||||||||||||||||||    
T  871 aagtgtacttttggtccactaaattttaaaatgttgcgattttg 828  T

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Target: scaffold0406 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 98
Target Start/End: Original strand, 2017 - 2045
Alignment:
Q  70 cctctaagttttaaaatgttgcgattttg 98  Q
    |||||||||||||||||||||||||||||    
T  2017 cctctaagttttaaaatgttgcgattttg 2045  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 98
Target Start/End: Original strand, 18695024 - 18695052
Alignment:
Q  70 cctctaagttttaaaatgttgcgattttg 98  Q
    |||||||||||||||||||||||||||||    
T  18695024 cctctaagttttaaaatgttgcgattttg 18695052  T

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