View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12180_low_7 (Length: 459)

Name: NF12180_low_7
Description: NF12180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12180_low_7
NF12180_low_7
[»] chr5 (19 HSPs)
chr5 (14-441)||(40362179-40362610)
chr5 (147-343)||(40457302-40457498)
chr5 (147-336)||(40406345-40406534)
chr5 (147-336)||(40409054-40409243)
chr5 (150-336)||(40326384-40326570)
chr5 (201-314)||(40363351-40363464)
chr5 (42-104)||(40457525-40457587)
chr5 (336-439)||(40388495-40388599)
chr5 (158-336)||(40283464-40283642)
chr5 (336-439)||(40409284-40409389)
chr5 (331-439)||(40457164-40457273)
chr5 (343-440)||(40406582-40406680)
chr5 (171-336)||(40311125-40311290)
chr5 (16-103)||(40408939-40409026)
chr5 (262-341)||(40277946-40278025)
chr5 (170-336)||(40256900-40257066)
chr5 (223-341)||(40377061-40377179)
chr5 (170-341)||(40303518-40303684)
chr5 (223-341)||(40597554-40597672)


Alignment Details
Target: chr5 (Bit Score: 398; Significance: 0; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 14 - 441
Target Start/End: Original strand, 40362179 - 40362610
Alignment:
Q  14 tgtgctcgaatacaataatagactttgctaattaaaaggatttttacattcatagattcgaatatgaactcatccaaaagattgtggagttttttgaaca 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40362179 tgtgctcgaatacaataatagactttgctaattaaaaggatttttgcattcatagattcgaatatgaactcatccaaaagattgtggagttttttgaaca 40362278  T
Q  114 agccaaaagattgtggagttaacagcaatccctatgtttttctaagtttttgcggggaagatactcgctactcctttacgggattcctctatcatgcttt 213  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40362279 agccaaaagattgtggagttaacagcaatcgctatgtttttctaagtttttgcggggaagatactcgctactcctttacgggattcctctatcatgcttt 40362378  T
Q  214 gtgtcgtgagggattcaagatcttcatggatgatgagggattggagggtggaaaccaaatttcacaaactctactcaaagcaattgaaaaatcaaggctt 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40362379 gtgtcgtgagggattcaagatcttcatggatgatgagggattggagggtggaaaccaaatttcacaaactctactcaaagcaattgaaaaatcaaggctt 40362478  T
Q  314 tcaattgttgttttgtctgaaaattatggagtgcaagaagacaaataatcaattggtttagccagtattttac-aaatagaataatcagatg---taagc 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||   |||||    
T  40362479 tcaattgttgttttgtctgaaaattatggagtgcaagaagacaaataatcaattggtttagccagtattttacaaaatagaataatcagatgtaataagc 40362578  T
Q  410 tatcaaacaaaaatttatggtaaagccatgaa 441  Q
    || |||||||||||||||||||||||||||||    
T  40362579 taccaaacaaaaatttatggtaaagccatgaa 40362610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 147 - 343
Target Start/End: Complemental strand, 40457498 - 40457302
Alignment:
Q  147 atgtttttctaagtttttgcggggaagatactcgctactcctttacgggattcctctatcatgctttgtgtcgtgagggattcaagatcttcatggatga 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||    
T  40457498 atgtttttctaagtttttgcggggaagatactcgctactcctttacgggattcctctatcatgctttgcgtctagagggattcaagatcttcatggatga 40457399  T
Q  247 tgagggattggagggtggaaaccaaatttcacaaactctactcaaagcaattgaaaaatcaaggctttcaattgttgttttgtctgaaaattatgga 343  Q
    |||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  40457398 tgagggattggagggtggaaaccaaatttcacaaactcttttaaaagcaattgaaaaatcaaggctctcaattgttgttttgtccgaaaattatgga 40457302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 147 - 336
Target Start/End: Original strand, 40406345 - 40406534
Alignment:
Q  147 atgtttttctaagtttttgcggggaagatactcgctactcctttacgggattcctctatcatgctttgtgtcgtgagggattcaagatcttcatggatga 246  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| ||  |||||||||||||||||||||||||||    
T  40406345 atgtttttctcagtttttgcggggaagatactcgctactcctttacaggatttctctaccatgctttgagtaatgagggattcaagatcttcatggatga 40406444  T
Q  247 tgagggattggagggtggaaaccaaatttcacaaactctactcaaagcaattgaaaaatcaaggctttcaattgttgttttgtctgaaaa 336  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  40406445 tgagggattggagggtggaaaccaaatttcacaaactcttctcgaagcaattgaaaaatcaaggctttcaattgttgttttgtctgaaaa 40406534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 147 - 336
Target Start/End: Original strand, 40409054 - 40409243
Alignment:
Q  147 atgtttttctaagtttttgcggggaagatactcgctactcctttacgggattcctctatcatgctttgtgtcgtgagggattcaagatcttcatggatga 246  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||||| |||| ||| |||||||||||| ||||||||||||||    
T  40409054 atgtttttctcagtttttgcggggaagatactcgctactcttttacaggatttctctatcatgatttgcgtcatgagggattcaaaatcttcatggatga 40409153  T
Q  247 tgagggattggagggtggaaaccaaatttcacaaactctactcaaagcaattgaaaaatcaaggctttcaattgttgttttgtctgaaaa 336  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40409154 tgagggattgaagggtggaaaccaaatttcacaaactttactcaaagcaattgaaaaatcaaggctttcaattgttgttttgtctgaaaa 40409243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 150 - 336
Target Start/End: Original strand, 40326384 - 40326570
Alignment:
Q  150 tttttctaagtttttgcggggaagatactcgctactcctttacgggattcctctatcatgctttgtgtcgtgagggattcaagatcttcatggatgatga 249  Q
    ||||||||||||||   || ||||||||||||||||| || || || || |||||| ||  | ||||||| ||||| ||||||| |||||||||||||||    
T  40326384 tttttctaagttttaaaggagaagatactcgctactctttcacaggttttctctataatattctgtgtcgagaggggttcaagaccttcatggatgatga 40326483  T
Q  250 gggattggagggtggaaaccaaatttcacaaactctactcaaagcaattgaaaaatcaaggctttcaattgttgttttgtctgaaaa 336  Q
    || |||| ||||||| ||  ||||||||  | ||||| |||||||||||||   ||||||| |||||||||||||||| ||||||||    
T  40326484 ggaattgaagggtgggaatgaaatttcatcatctctaatcaaagcaattgaggcatcaaggatttcaattgttgttttctctgaaaa 40326570  T

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Target: chr5; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 201 - 314
Target Start/End: Complemental strand, 40363464 - 40363351
Alignment:
Q  201 tctatcatgctttgtgtcgtgagggattcaagatcttcatggatgatgagggattggagggtggaaaccaaatttcacaaactctactcaaagcaattga 300  Q
    |||||||||||||   ||||||||||||||| ||| ||||||||||| |||||||||| |||||||||||| |||||| |||||| ||||||| ||| ||    
T  40363464 tctatcatgcttttcatcgtgagggattcaaaatcgtcatggatgataagggattggatggtggaaaccaagtttcactaactcttctcaaagaaatcga 40363365  T
Q  301 aaaatcaaggcttt 314  Q
    | ||||||||||||    
T  40363364 acaatcaaggcttt 40363351  T

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Target: chr5; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 40457587 - 40457525
Alignment:
Q  42 taattaaaaggatttttacattcatagattcgaatatgaactcatccaaaagattgtggagtt 104  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  40457587 taattaaaaggatttttgcattcatagattcgaatatgaactcatccaaaagattgtggagtt 40457525  T

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Target: chr5; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 336 - 439
Target Start/End: Original strand, 40388495 - 40388599
Alignment:
Q  336 attatggagtgcaagaagacaaataatcaattggtttagccagtattttacaa-atagaataatcagatgtaagctatcaaacaaaaatttatggtaaag 434  Q
    |||||||||||||| |||||   ||||||||| ||||||||| |||||||||| |||||| |||||||||||||  || ||||||||| |||||||||||    
T  40388495 attatggagtgcaaaaagacccgtaatcaattagtttagccaatattttacaatatagaacaatcagatgtaagaaatgaaacaaaaagttatggtaaag 40388594  T
Q  435 ccatg 439  Q
    |||||    
T  40388595 ccatg 40388599  T

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Target: chr5; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 158 - 336
Target Start/End: Original strand, 40283464 - 40283642
Alignment:
Q  158 agtttttgcggggaagatactcgctactcctttacgggattcctctatcatgctttgtgtcgtgagggattcaagatcttcatggatgatgagggattgg 257  Q
    |||||| | ||||||||||||||  | || ||||| || || |||||| |||||||||| || ||||| ||||||| ||||||||||||||||| | ||     
T  40283464 agttttagaggggaagatactcgtcagtcttttacaggttttctctatgatgctttgtgccgggaggggttcaagaccttcatggatgatgaggaactga 40283563  T
Q  258 agggtggaaaccaaatttcacaaactctactcaaagcaattgaaaaatcaaggctttcaattgttgttttgtctgaaaa 336  Q
    | || ||  |  ||||||||  | ||||| |||||||||||||   ||||||| |||||||||||||||| ||||||||    
T  40283564 aaggcggggaggaaatttcatcatctctagtcaaagcaattgaggcatcaaggatttcaattgttgttttttctgaaaa 40283642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 336 - 439
Target Start/End: Original strand, 40409284 - 40409389
Alignment:
Q  336 attatggagtgcaagaagacaaataatcaattggtttag-ccagtattttacaaa-tagaataatcagatgtaagctatcaaacaaaaatttatggtaaa 433  Q
    |||||||||||||||||||| |||||||||||||  | | ||| ||||||||||| |||||  | ||||||||||| |||||||||||| ||||||||||    
T  40409284 attatggagtgcaagaagaccaataatcaattggaattgaccaatattttacaaaatagaacgaccagatgtaagcaatcaaacaaaaagttatggtaaa 40409383  T
Q  434 gccatg 439  Q
    ||||||    
T  40409384 gccatg 40409389  T

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Target: chr5; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 331 - 439
Target Start/End: Complemental strand, 40457273 - 40457164
Alignment:
Q  331 tgaaaattatggagtgcaagaagacaaataatcaattggtttagccagtattttac-aaatagaataatcagatgtaagctatcaaacaaaaatttatgg 429  Q
    |||| |||||||||||||||||||| |||||| ||||||||| |||| |||||||| |||||||| | |||||| |||||||| ||| ||  | ||||||    
T  40457273 tgaagattatggagtgcaagaagaccaataataaattggtttggccactattttacaaaatagaacagtcagatttaagctataaaaaaagtagttatgg 40457174  T
Q  430 taaagccatg 439  Q
    ||||||||||    
T  40457173 taaagccatg 40457164  T

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Target: chr5; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 343 - 440
Target Start/End: Original strand, 40406582 - 40406680
Alignment:
Q  343 agtgcaagaagacaaataatcaattggtttagccagtattttacaaa-tagaataatcagatgtaagctatcaaacaaaaatttatggtaaagccatga 440  Q
    |||||| |||||| || ||||||||||||| |||  | ||||||||| ||||| |||||||||||||| |||||||||||| |||||| ||||||||||    
T  40406582 agtgcatgaagaccaagaatcaattggtttggcctattttttacaaaatagaacaatcagatgtaagcaatcaaacaaaaagttatggcaaagccatga 40406680  T

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Target: chr5; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 171 - 336
Target Start/End: Original strand, 40311125 - 40311290
Alignment:
Q  171 aagatactcgctactcctttacgggattcctctatcatgctttgtgtcgtgagggattcaagatcttcatggatgatgagggattggagggtggaaacca 270  Q
    ||||||||||  |||| |||||||| || |||||| ||||| | || || || || ||||||| |||||||||||||||||| ||| |||||||| || |    
T  40311125 aagatactcgtgactcttttacgggttttctctatgatgctctatgccgggaagggttcaagaccttcatggatgatgaggggttgaagggtggagacga 40311224  T
Q  271 aatttcacaaactctactcaaagcaattgaaaaatcaaggctttcaattgttgttttgtctgaaaa 336  Q
    |||||||    ||||| |||||||||||||   ||||||| ||||| || ||||||| ||| ||||    
T  40311225 aatttcatcttctctaatcaaagcaattgaggcatcaaggatttcagttattgttttctctaaaaa 40311290  T

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Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 40408939 - 40409026
Alignment:
Q  16 tgctcgaatacaataatagactttgctaattaaaaggatttttacattcatagattcgaatatgaactcatccaaaagattgtggagt 103  Q
    |||||||| |||||||||||||||   |||||||| ||| | | ||||||||| ||||||||||||||| || | |||||||||||||    
T  40408939 tgctcgaacacaataatagactttatgaattaaaatgatctgtgcattcataggttcgaatatgaactcttcaagaagattgtggagt 40409026  T

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Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 262 - 341
Target Start/End: Original strand, 40277946 - 40278025
Alignment:
Q  262 tggaaaccaaatttcacaaactctactcaaagcaattgaaaaatcaaggctttcaattgttgttttgtctgaaaattatg 341  Q
    |||| |||||||||||| ||||||  | ||  ||||||||  | ||||||||||||||||||||||||||||||| ||||    
T  40277946 tggagaccaaatttcaccaactcttttaaattcaattgaagcagcaaggctttcaattgttgttttgtctgaaaactatg 40278025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 336
Target Start/End: Complemental strand, 40257066 - 40256900
Alignment:
Q  170 gaagatactcgctactcctttacgggattcctctatcatgctttgtgtcgtgagggattcaagatcttcatggatgatgagggattggagggtggaaacc 269  Q
    ||||||||||| || || ||||| || |  ||||||| ||||||||| |  |  ||||| || | |||||||||||| |  ||||||||||||||  |||    
T  40257066 gaagatactcgttattcttttacaggctctctctatcgtgctttgtgccaggtcggatttaaaaccttcatggatgaaggaggattggagggtggtgacc 40256967  T
Q  270 aaatttcacaaactctactcaaagcaattgaaaaatcaaggctttcaattgttgttttgtctgaaaa 336  Q
    |||||||||   | || ||||| |||||||||  |||||||||||| ||| ||||||| || |||||    
T  40256966 aaatttcactttcacttctcaatgcaattgaagcatcaaggctttccattattgttttatccgaaaa 40256900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 341
Target Start/End: Original strand, 40377061 - 40377179
Alignment:
Q  223 gggattcaagatcttcatggatgatgagggattggagggtggaaaccaaatttcacaaactctactcaaagcaattgaaaaatcaaggctttcaattgtt 322  Q
    |||||||||||| |||||||||||| | |||||| |   |||| ||| |||||||||  |||| |  || |||||||||  | |||| ||||||||| ||    
T  40377061 gggattcaagattttcatggatgataaaggattgcacactggagaccgaatttcacattctcttcgaaatgcaattgaagcaacaagactttcaattatt 40377160  T
Q  323 gttttgtctgaaaattatg 341  Q
    |||||||||||||| ||||    
T  40377161 gttttgtctgaaaactatg 40377179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 341
Target Start/End: Original strand, 40303518 - 40303684
Alignment:
Q  170 gaagatactcgctactcctttacgggattcctctatcatgctttgtgtcgtgagggattcaagatcttcatggatgatgagggattggagggtggaaacc 269  Q
    ||||||||||| ||||| |||||||| || |||||| ||||| | ||||| || |||||||| |  ||||||||| ||| ||||||| |   |||  |||    
T  40303518 gaagatactcggtactcttttacgggttttctctatgatgctctctgtcgagaaggattcaaaacattcatggattatgggggattgcatattggggacc 40303617  T
Q  270 aaatttcacaaactctactcaaagcaattgaaaaatcaaggctttcaattgttgttttgtctgaaaattatg 341  Q
    |||||||||     |  |||  |  |||||||  ||||| |||||| |||||||||||||||||||||||||    
T  40303618 aaatttcac-----cctctcttattaattgaagcatcaaagctttcgattgttgttttgtctgaaaattatg 40303684  T

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Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 341
Target Start/End: Complemental strand, 40597672 - 40597554
Alignment:
Q  223 gggattcaagatcttcatggatgatgagggattggagggtggaaaccaaatttcacaaactctactcaaagcaattgaaaaatcaaggctttcaattgtt 322  Q
    ||||||||||| ||||||||||||||  ||| || |   |||| || |||||||||  ||||| || || ||||||||| |||||||||| || ||| |     
T  40597672 gggattcaagaccttcatggatgatggaggactgcacactggagacaaaatttcacccactcttctaaatgcaattgaagaatcaaggctgtcgattatc 40597573  T
Q  323 gttttgtctgaaaattatg 341  Q
     ||||||||||||| ||||    
T  40597572 attttgtctgaaaactatg 40597554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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