View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12180_low_8 (Length: 400)
Name: NF12180_low_8
Description: NF12180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12180_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 144 - 391
Target Start/End: Complemental strand, 46869537 - 46869290
Alignment:
| Q |
144 |
atgtaaataatttactatacttattgcattaaaatgccttcatgatgctttatgataagctttcatcgtatttttcgggaggatgtaaataacttaccat |
243 |
Q |
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| T |
46869537 |
atgtaaataatttactatacttattgcattaaaatgccttcatgatgctttatgataagctttcatcgtatttttcgggaggatgtaaataacttaccat |
46869438 |
T |
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| Q |
244 |
actttcttgcattaaatttaaaatttaacaactgtatcatagaaaagggaataatatcatatctacatgcatgagaaaacccagcccccgatatatcaca |
343 |
Q |
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| T |
46869437 |
actttctagcattaaatttaaaatttaacaactgtatcatagaaaagggaataatatcatatctacatgcatgagaaaaccaagcccccgatatatcaca |
46869338 |
T |
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| Q |
344 |
gatgcaaatgacaaataatatcatatctttgttgattcacacaggttc |
391 |
Q |
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| T |
46869337 |
gatgtaaatgacaaataatatcatatctttgttgattcacacaggttc |
46869290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 52 - 139
Target Start/End: Complemental strand, 46869668 - 46869581
Alignment:
| Q |
52 |
aaaaatgccttcatcgtgcatcagtgtaaaacttacaatgttcagcttcatcgtaatatagctttatgcaatattacttatattgttc |
139 |
Q |
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| T |
46869668 |
aaaaatgccttcatcgtgcatcagtgtaaaacttacaatgttcagcttcatcgtaatatagctttatgcaatattacttatattgttc |
46869581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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