View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12180_low_9 (Length: 395)
Name: NF12180_low_9
Description: NF12180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12180_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 2 - 388
Target Start/End: Original strand, 36267721 - 36268104
Alignment:
| Q |
2 |
agttaaatcaagcaggcctgtaccacatccaccaagctccataggagggcatgatactttttgaatatcattacaatttgtcctctcgggcaatgttgaa |
101 |
Q |
| |
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||||||||||| |||||||| ||||||||||||| |||| ||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
36267721 |
agttaaatcaaataggcctgtgccacatccaccaacctccgtaggacggcatgatgctttttcaatatcattacaatttgtcctctcgggcaatgttgaa |
36267820 |
T |
|
| Q |
102 |
gtagcagttaaatcaaataggcctgtgccacatccaccaacctccgtaggacggcatgatgctttttcaatatcattacaatttgtcctctggggcaatg |
201 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36267821 |
g---cagttaaatcaaataggcctgtgccacatccaccaacctccgtaggatggcatgatgctttttcaatatcattacaatttgtcctctggggcaatg |
36267917 |
T |
|
| Q |
202 |
ttgaagttgcagttaaattgccacaacaaatgtccttctgatccaaaatacggtgctcactgtccacacaaactttcatttgatcacatagcttcaagaa |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36267918 |
ttgaagttgcagttaaattgccacaacaaatgtccttctgatccaaaatacggtgctcactgtccacacaaactttcatttgatcacgtagcttcaagaa |
36268017 |
T |
|
| Q |
302 |
agatgagttaatttctccagaagttctttgacatagtttctcacagcatcttaagcataggctatatgaacaactatcacaggttct |
388 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36268018 |
agatgagttaatttctccagaagttctttgacatagtttctcacagcatcttaagcataggctatatgaacaactatcacaggttct |
36268104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 36267615 - 36267821
Alignment:
| Q |
1 |
tagttaaatcaagcaggcctgtaccacatccaccaagctccataggagggcatgatactttttgaatatcattacaatttgtcctctcgggcaatgttga |
100 |
Q |
| |
|
|||||||||||||||| |||||| | | |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36267615 |
tagttaaatcaagcagacctgtatctcgtccaccaagctctgtaggagggcatgatactttttcgctatcattacaatttgtcctctcgggcaatgttga |
36267714 |
T |
|
| Q |
101 |
agtagcagttaaatcaaataggcctgtgccacatccaccaacctccgtaggacggcatgatgctttttcaatatcattacaatttgtcctctggggcaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
36267715 |
agtagcagttaaatcaaataggcctgtgccacatccaccaacctccgtaggacggcatgatgctttttcaatatcattacaatttgtcctctcgggcaat |
36267814 |
T |
|
| Q |
201 |
gttgaag |
207 |
Q |
| |
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||||||| |
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|
| T |
36267815 |
gttgaag |
36267821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 2 - 219
Target Start/End: Original strand, 36267196 - 36267413
Alignment:
| Q |
2 |
agttaaatcaagcaggcctgtaccacatccaccaagctccataggagggcatgatactttttgaatatcattacaatttgtcctctcgggcaatgttgaa |
101 |
Q |
| |
|
|||||||||||||| | ||||| | | |||||||||||||| ||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||| |
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|
| T |
36267196 |
agttaaatcaagcatgtctgtatctcttccaccaagctccagaggagggcatgatacctttttgatatcattacaatttgtcatctcgggcaatgttgaa |
36267295 |
T |
|
| Q |
102 |
gtagcagttaaatcaaataggcctgtgccacatccaccaacctccgtaggacggcatgatgctttttcaatatcattacaatttgtcctctggggcaatg |
201 |
Q |
| |
|
|||||||||||||||| ||| |||| | | |||||||| |||||||||| |||||||| |||||||||||||||||||||||||| ||| |||||||| |
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| T |
36267296 |
gtagcagttaaatcaagcaggtctgtatctcgtccaccaagctccgtaggagggcatgatactttttcaatatcattacaatttgtcatctcgggcaatg |
36267395 |
T |
|
| Q |
202 |
ttgaagttgcagttaaat |
219 |
Q |
| |
|
||||||| |||||||||| |
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|
| T |
36267396 |
ttgaagtagcagttaaat |
36267413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 5 - 219
Target Start/End: Original strand, 36267094 - 36267308
Alignment:
| Q |
5 |
taaatcaagcaggcctgtaccacatccaccaagctccataggagggcatgatactttttgaatatcattacaatttgtcctctcgggcaatgttgaagta |
104 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||| |
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|
| T |
36267094 |
taaatcaagaaggcctgtaccacatccaccaagctccgtaggagggcatgatactttttcaatatcattacaatttgtcctctcgggcgacgttgaagta |
36267193 |
T |
|
| Q |
105 |
gcagttaaatcaaataggcctgtgccacatccaccaacctccgtaggacggcatgatgctttttcaatatcattacaatttgtcctctggggcaatgttg |
204 |
Q |
| |
|
||||||||||||| | | |||| | | |||||||| |||| |||| |||||||| | |||| |||||||||||||||||| ||| ||||||||||| |
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|
| T |
36267194 |
gcagttaaatcaagcatgtctgtatctcttccaccaagctccagaggagggcatgatacctttttgatatcattacaatttgtcatctcgggcaatgttg |
36267293 |
T |
|
| Q |
205 |
aagttgcagttaaat |
219 |
Q |
| |
|
|||| |||||||||| |
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|
| T |
36267294 |
aagtagcagttaaat |
36267308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 2 - 219
Target Start/End: Original strand, 36267301 - 36267518
Alignment:
| Q |
2 |
agttaaatcaagcaggcctgtaccacatccaccaagctccataggagggcatgatactttttgaatatcattacaatttgtcctctcgggcaatgttgaa |
101 |
Q |
| |
|
|||||||||||||||| ||||| | | ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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|
| T |
36267301 |
agttaaatcaagcaggtctgtatctcgtccaccaagctccgtaggagggcatgatactttttcaatatcattacaatttgtcatctcgggcaatgttgaa |
36267400 |
T |
|
| Q |
102 |
gtagcagttaaatcaaataggcctgtgccacatccaccaacctccgtaggacggcatgatgctttttcaatatcattacaatttgtcctctggggcaatg |
201 |
Q |
| |
|
|||||||||||||||| || ||||| | | |||| ||| |||||||||| |||||||| |||||| ||||||||||||||||| ||| |||||| |
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|
| T |
36267401 |
gtagcagttaaatcaagcagacctgtatctcgtccatcaagctccgtaggagggcatgatacttttttgctatcattacaatttgtcatctcgggcaaca |
36267500 |
T |
|
| Q |
202 |
ttgaagttgcagttaaat |
219 |
Q |
| |
|
||||||| | |||||||| |
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|
| T |
36267501 |
ttgaagtagtagttaaat |
36267518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 36267510 - 36267728
Alignment:
| Q |
1 |
tagttaaatcaagcaggcctgtaccacatccaccaagctccataggagggcatgatactttttgaatatcattacaatttgtcctctcgggcaatgttga |
100 |
Q |
| |
|
|||||||||||||||| |||||| | | ||||||||||||| ||||||||||||||||||||| ||||||||||||||||| | || ||||| ||||| |
|
|
| T |
36267510 |
tagttaaatcaagcagacctgtatctcgtccaccaagctccgtaggagggcatgatacttttttgctatcattacaatttgtcatatcaggcaacgttga |
36267609 |
T |
|
| Q |
101 |
agtagcagttaaatcaaataggcctgtgccacatccaccaacctccgtaggacggcatgatgctttttcaatatcattacaatttgtcctctggggcaat |
200 |
Q |
| |
|
| || ||||||||||| || ||||| | | |||||||| ||| |||||| |||||||| ||||||| ||||||||||||||||||||| ||||||| |
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|
| T |
36267610 |
acaagtagttaaatcaagcagacctgtatctcgtccaccaagctctgtaggagggcatgatactttttcgctatcattacaatttgtcctctcgggcaat |
36267709 |
T |
|
| Q |
201 |
gttgaagttgcagttaaat |
219 |
Q |
| |
|
|||||||| |||||||||| |
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|
| T |
36267710 |
gttgaagtagcagttaaat |
36267728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 2 - 188
Target Start/End: Original strand, 36267406 - 36267592
Alignment:
| Q |
2 |
agttaaatcaagcaggcctgtaccacatccaccaagctccataggagggcatgatactttttgaatatcattacaatttgtcctctcgggcaatgttgaa |
101 |
Q |
| |
|
||||||||||||||| |||||| | | |||| |||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||| |
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|
| T |
36267406 |
agttaaatcaagcagacctgtatctcgtccatcaagctccgtaggagggcatgatacttttttgctatcattacaatttgtcatctcgggcaacattgaa |
36267505 |
T |
|
| Q |
102 |
gtagcagttaaatcaaataggcctgtgccacatccaccaacctccgtaggacggcatgatgctttttcaatatcattacaatttgtc |
188 |
Q |
| |
|
|||| ||||||||||| || ||||| | | |||||||| |||||||||| |||||||| |||||| ||||||||||||||||| |
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|
| T |
36267506 |
gtagtagttaaatcaagcagacctgtatctcgtccaccaagctccgtaggagggcatgatacttttttgctatcattacaatttgtc |
36267592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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