View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12181_high_3 (Length: 292)
Name: NF12181_high_3
Description: NF12181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12181_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 144; Significance: 9e-76; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 21 - 280
Target Start/End: Original strand, 37805170 - 37805438
Alignment:
| Q |
21 |
tacacaaatcttaaacaattattattttaagatgatcaaagaattgnnnnnnnnngctaatatatgcaaagttgtacttttttactcataaatgtcatta |
120 |
Q |
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| T |
37805170 |
tacacaaatcttaatcaattattattttgagatgatcaaggaattgttttttt--gctaatatatgcaaagttgtacttttttactcataaatgtcatta |
37805267 |
T |
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| Q |
121 |
agtttagtcaaataaataattgactttaaaaacac--tgatattatttgcctatattataactccttaacctccacagctcctctacagaaag------- |
211 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37805268 |
agtttagtcaaataaataattgactttaaaaacactgtgatattatttgcctatattataactccttaacctccacagctcctctacagaaagaaagaaa |
37805367 |
T |
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| Q |
212 |
--aagnnnnnnnnnnnnctcctttacctcaccaattgtaccatggctaattttctttgcacctttcttctc |
280 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37805368 |
aaaaaaaaaaaaaaaaactcctttacctcaccaattgtaccatggctaattttctttgcacctttcttctc |
37805438 |
T |
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