View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12181_low_2 (Length: 484)
Name: NF12181_low_2
Description: NF12181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12181_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 3492505 - 3492197
Alignment:
| Q |
1 |
cttcatatgaatgaaatcaatcatattcttttgaccggtaatgattataagaccttaaaaagaacaacattaacgctgtttaataactatcgaagcattt |
100 |
Q |
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| T |
3492505 |
cttcatatgaatgaaaccaatcatattcttttgaccggtaatgattataagaccttaaaaagaaaaacattaacgctgtttaaaaactatcgaagcattt |
3492406 |
T |
|
| Q |
101 |
cagagagaaagaaagagggagatatggcagatatgggatctagaagggtatgtgacaatgtgtgtggctgcacaattccgtgtcctggtggttccacttg |
200 |
Q |
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| T |
3492405 |
cagagagaaagaaagagggagatatggcagatatgggatctagaatggtatgtgacaatgtgtgtggctgcacaattccgtgtgctggtggttccacttg |
3492306 |
T |
|
| Q |
201 |
caggtaaatttcttttgtttttcgtggtcttgttaagttaaatattatttaatatctttgtaatagccatttctacattttctattttcttaaatgacca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3492305 |
caggtaaatttcttttgtttttcgtggtcttgttaagttaaatattatttaatatctttgtaatagccatttctacattttctattttcttaagtgacca |
3492206 |
T |
|
| Q |
301 |
atgttatta |
309 |
Q |
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||||||||| |
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| T |
3492205 |
atgttatta |
3492197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 385 - 468
Target Start/End: Complemental strand, 3492204 - 3492121
Alignment:
| Q |
385 |
tgttattaattaattgttagattgattttacttctttgtaactccttattaatattcactttattctcaaaagtaaattggcca |
468 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3492204 |
tgttattaattaattgttagattgattttacttctttgtaactccttattaatattcactttattctcaaaagtaaattggcca |
3492121 |
T |
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