View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12181_low_3 (Length: 474)

Name: NF12181_low_3
Description: NF12181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12181_low_3
NF12181_low_3
[»] chr1 (8 HSPs)
chr1 (211-466)||(3141305-3141565)
chr1 (145-213)||(3140479-3140547)
chr1 (19-85)||(3140361-3140427)
chr1 (26-122)||(9769570-9769665)
chr1 (27-130)||(13941330-13941432)
chr1 (18-60)||(14776811-14776853)
chr1 (43-125)||(48260176-48260257)
chr1 (26-127)||(16182819-16182919)
[»] chr3 (6 HSPs)
chr3 (22-126)||(28951872-28951975)
chr3 (26-118)||(23237372-23237463)
chr3 (78-130)||(17262281-17262332)
chr3 (22-58)||(19149430-19149466)
chr3 (22-58)||(24890079-24890115)
chr3 (22-122)||(26583107-26583207)
[»] chr6 (1 HSPs)
chr6 (22-100)||(30668195-30668273)
[»] chr2 (5 HSPs)
chr2 (26-108)||(32288386-32288468)
chr2 (26-127)||(32944072-32944172)
chr2 (19-122)||(44487757-44487859)
chr2 (26-130)||(29896143-29896246)
chr2 (20-56)||(40471157-40471193)
[»] chr8 (1 HSPs)
chr8 (26-121)||(41531213-41531307)
[»] chr4 (5 HSPs)
chr4 (22-56)||(3465901-3465935)
chr4 (42-122)||(35112734-35112811)
chr4 (26-115)||(49319403-49319492)
chr4 (78-122)||(16323853-16323897)
chr4 (22-130)||(30032820-30032927)
[»] chr5 (4 HSPs)
chr5 (23-117)||(17557037-17557129)
chr5 (22-56)||(22867047-22867081)
chr5 (40-122)||(39684262-39684343)
chr5 (89-130)||(18535987-18536027)
[»] chr7 (1 HSPs)
chr7 (26-58)||(26560019-26560051)


Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 211 - 466
Target Start/End: Original strand, 3141305 - 3141565
Alignment:
Q  211 tgagagagtgttgtattgcaaaagtgaaagttgaagcactttttctgttgcagtttttgttttctcactattgagcatttatgtcgtcatgagacaaagg 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3141305 tgagagagtgttgtattgcaaaagtgaaagttgaagcactttttctgttgcagtttttgttttctcactactgagcatttatgtcgtcatgagacaaagg 3141404  T
Q  311 taaaatatcaaatcacatggtacta-----tgtaggacacagtagagaataaaaataggtagaaggagaaaaatgtctaagaaaatatggcgtgtttatc 405  Q
    |||||||||| ||||||||||||||     ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  3141405 taaaatatcacatcacatggtactagtagatgtaggacacagtagagaataaaaataggtagggggagaaaaatgtctaagaaaatatggcgtgtttatc 3141504  T
Q  406 tcagcatgagcatgaaggatgaacataacatggatgaaagctcataaagaacctctgtgct 466  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3141505 tcagcatgagcatgaaggatgaacataacatggatgaaagctcataaagaacctctgtgct 3141565  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 145 - 213
Target Start/End: Original strand, 3140479 - 3140547
Alignment:
Q  145 tagacatttgattctttaattaatttttaagttttggtcccttaataccatctccttcatcgcatttga 213  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  3140479 tagacatttgattctttaattaatttttaagttttggtgccttaataccatctccttcatcccatttga 3140547  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 3140361 - 3140427
Alignment:
Q  19 agtataactcagttgacaaagacatgcattattatatgtatggatcagagttcaaacaacggacatc 85  Q
    |||||||||||||||||| ||||||||||| ||||||||| || || | ||||||||| ||||||||    
T  3140361 agtataactcagttgacagagacatgcattgttatatgtaggggtcggggttcaaacatcggacatc 3140427  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 9769665 - 9769570
Alignment:
Q  26 ctcagttgacaaagacatgcattattatatgtatggatcagagttcaaacaacggacatcccgcttattcaccttgcaaaaaagtgaattctaacca 122  Q
    |||||||| ||  |||||||||||||||||||| ||||  | |||| |||  |||||| ||| ||||||||||||| ||||| ||||||||||||||    
T  9769665 ctcagttggcagggacatgcattattatatgtagggattggggttcgaaccccggacaccccacttattcaccttg-aaaaaggtgaattctaacca 9769570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 130
Target Start/End: Original strand, 13941330 - 13941432
Alignment:
Q  27 tcagttgacaaagacatgcattattatatgtatggatcagagttcaaacaacggacatcccgcttattcaccttgcaaaaaagtgaattctaaccattaa 126  Q
    ||||||| ||| |||||||||| ||||||| | || ||   |||| |||  |||||| ||| |||||||| |||| |||||||||||||||||||| |||    
T  13941330 tcagttggcaaggacatgcattgttatatgcagggttcgaggttcgaacttcggacaccccacttattcatcttg-aaaaaagtgaattctaaccactaa 13941428  T
Q  127 acta 130  Q
    ||||    
T  13941429 acta 13941432  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 14776853 - 14776811
Alignment:
Q  18 aagtataactcagttgacaaagacatgcattattatatgtatg 60  Q
    |||||||| | |||||||||||| |||||||||||||||||||    
T  14776853 aagtataatttagttgacaaagatatgcattattatatgtatg 14776811  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 125
Target Start/End: Complemental strand, 48260257 - 48260176
Alignment:
Q  43 tgcattattatatgtatggatcagagttcaaacaacggacatcccgcttattcaccttgcaaaaaagtgaattctaaccatta 125  Q
    |||||||||||||||  || || |||||| |||  |||||| ||| ||||||||||||| ||||| |||||||||| ||||||    
T  48260257 tgcattattatatgtcggggtcggagttcgaaccccggacaccccacttattcaccttg-aaaaatgtgaattctagccatta 48260176  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 127
Target Start/End: Original strand, 16182819 - 16182919
Alignment:
Q  26 ctcagttgacaaagacatgcattattatatgtatggatcagagttcaaacaacggacatcccgcttattcaccttgcaaaaaagtgaattctaaccatta 125  Q
    |||||||| || ||||||||||||||||||||| ||    | ||||||||  |||||| ||| |||||||| |||| |||||  ||||||||||||| ||    
T  16182819 ctcagttggcagagacatgcattattatatgtaggggctggggttcaaaccccggacaccccacttattcatcttg-aaaaatatgaattctaaccacta 16182917  T
Q  126 aa 127  Q
    ||    
T  16182918 aa 16182919  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 28951872 - 28951975
Alignment:
Q  22 ataactcagttgacaaagacatgcattattatatgtatggatcagagttcaaacaacggacatcccgcttattcaccttgcaaaaaagtgaattctaacc 121  Q
    |||||||||||| || | ||||||||||||||||| | || |||| |||| |||  || ||| ||| ||||||||||||| ||||| |||||||||||||    
T  28951872 ataactcagttggcagatacatgcattattatatgcaggggtcagggttcgaaccccgaacaccccacttattcaccttg-aaaaatgtgaattctaacc 28951970  T
Q  122 attaa 126  Q
    |||||    
T  28951971 attaa 28951975  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 23237372 - 23237463
Alignment:
Q  26 ctcagttgacaaagacatgcattattatatgtatggatcagagttcaaacaacggacatcccgcttattcaccttgcaaaaaagtgaattcta 118  Q
    |||||||| ||  |||||||||||||||||||| || || |||||| |||  |||||||||| | ||||||| ||| ||||| ||||||||||    
T  23237372 ctcagttggcagggacatgcattattatatgtaggggtcggagttcgaactccggacatcccacatattcacgttg-aaaaaggtgaattcta 23237463  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 130
Target Start/End: Original strand, 17262281 - 17262332
Alignment:
Q  78 cggacatcccgcttattcaccttgcaaaaaagtgaattctaaccattaaacta 130  Q
    |||||| ||| ||||||||||||| ||||| ||||||||||| ||||||||||    
T  17262281 cggacaccccacttattcaccttg-aaaaaggtgaattctaatcattaaacta 17262332  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 19149430 - 19149466
Alignment:
Q  22 ataactcagttgacaaagacatgcattattatatgta 58  Q
    |||| |||||||||| |||||||||||||||||||||    
T  19149430 ataattcagttgacagagacatgcattattatatgta 19149466  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 24890079 - 24890115
Alignment:
Q  22 ataactcagttgacaaagacatgcattattatatgta 58  Q
    |||||||||||||||| |||||||||| |||||||||    
T  24890079 ataactcagttgacaaggacatgcattgttatatgta 24890115  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 26583107 - 26583207
Alignment:
Q  22 ataactcagttgacaaagacatgcattattatatgtatggatcagagttcaaacaacggacatcccgcttattcaccttgcaaaaaagtgaattctaacc 121  Q
    |||||||| ||||||  |||||||||||||||||| | || || | |||| ||| ||||||| | |  ||||||| |||  |||| ||||||||||||||    
T  26583107 ataactcaattgacagggacatgcattattatatgcaggggtcggggttcgaactacggacacctcaattattcatcttaaaaaatagtgaattctaacc 26583206  T
Q  122 a 122  Q
    |    
T  26583207 a 26583207  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 22 - 100
Target Start/End: Complemental strand, 30668273 - 30668195
Alignment:
Q  22 ataactcagttgacaaagacatgcattattatatgtatggatcagagttcaaacaacggacatcccgcttattcacctt 100  Q
    |||||||||||| || ||||||||||||||||||| | || ||||||||| ||| ||| ||| ||| ||||||||||||    
T  30668273 ataactcagttggcatagacatgcattattatatgcaggggtcagagttcgaaccacgaacaccccacttattcacctt 30668195  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 26 - 108
Target Start/End: Original strand, 32288386 - 32288468
Alignment:
Q  26 ctcagttgacaaagacatgcattattatatgtatggatcagagttcaaacaacggacatcccgcttattcaccttgcaaaaaa 108  Q
    ||||||||||| | ||||||||||||||||||| ||||| | |||| |||  |||||| ||| ||||||||||||| ||||||    
T  32288386 ctcagttgacagaaacatgcattattatatgtagggatcggggttcgaacctcggacaccccacttattcaccttgaaaaaaa 32288468  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 127
Target Start/End: Original strand, 32944072 - 32944172
Alignment:
Q  26 ctcagttgacaaagacatgcattattatatgtatggatcagagttcaaacaacggacatcccgcttattcaccttgcaaaaaagtgaattctaaccatta 125  Q
    |||||||| ||  |||||||||||||||||| | | ||| ||||||||||  || ||| | | ||||||||||||| ||||||||||||||||| |||||    
T  32944072 ctcagttggcatggacatgcattattatatgcaggaatcggagttcaaactccgaacacctcacttattcaccttg-aaaaaagtgaattctaatcatta 32944170  T
Q  126 aa 127  Q
    ||    
T  32944171 aa 32944172  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 44487859 - 44487757
Alignment:
Q  19 agtataactcagttgacaaagacatgcattattatatgtatggatcagagttcaaacaacggacatcccgcttattcaccttgcaaaaaagtgaattcta 118  Q
    |||||| ||||||||| |  |||||||||||||||||| | ||  | |||||| |||  |||||||||| ||||||||||||  ||||| ||||||||||    
T  44487859 agtatagctcagttgatagggacatgcattattatatgcaagggccggagttcgaaccccggacatcccacttattcacctt-aaaaaaggtgaattcta 44487761  T
Q  119 acca 122  Q
    ||||    
T  44487760 acca 44487757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 130
Target Start/End: Complemental strand, 29896246 - 29896143
Alignment:
Q  26 ctcagttgacaaagacatgcattattatatgtatggatcagagttcaaacaacggacatcccgcttattcaccttgcaaaaaagtgaattctaaccatta 125  Q
    |||||||||||  |||||||||| ||||||| |||  |||| |||| ||  | ||||| ||| ||||||||||||| |||||  |||||||||||||||     
T  29896246 ctcagttgacagtgacatgcattgttatatgcatgagtcagggttcgaatcatggacaccccacttattcaccttg-aaaaagatgaattctaaccattg 29896148  T
Q  126 aacta 130  Q
    |||||    
T  29896147 aacta 29896143  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 40471157 - 40471193
Alignment:
Q  20 gtataactcagttgacaaagacatgcattattatatg 56  Q
    |||||||||||||||||  ||||||||||||||||||    
T  40471157 gtataactcagttgacagggacatgcattattatatg 40471193  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 121
Target Start/End: Complemental strand, 41531307 - 41531213
Alignment:
Q  26 ctcagttgacaaagacatgcattattatatgtatggatcagagttcaaacaacggacatcccgcttattcaccttgcaaaaaagtgaattctaacc 121  Q
    |||||||  ||| ||||| |||| |||||||||||| | ||||||| |||  |||||||| | ||||||||||||| |||||| ||||||||||||    
T  41531307 ctcagttagcaacgacatacattgttatatgtatgggttagagttcgaactccggacatctcccttattcaccttg-aaaaaattgaattctaacc 41531213  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 56
Target Start/End: Complemental strand, 3465935 - 3465901
Alignment:
Q  22 ataactcagttgacaaagacatgcattattatatg 56  Q
    |||||||||||||||||||||||||||||||||||    
T  3465935 ataactcagttgacaaagacatgcattattatatg 3465901  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 122
Target Start/End: Original strand, 35112734 - 35112811
Alignment:
Q  42 atgcattattatatgtatggatcagagttcaaacaacggacatcccgcttattcaccttgcaaaaaagtgaattctaacca 122  Q
    ||||||||||||||||| || || | |||| |||| ||||||||||||||||| |||||   | |||||||||||||||||    
T  35112734 atgcattattatatgtaggggtcggggttcgaacatcggacatcccgcttatttacctt---ataaagtgaattctaacca 35112811  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 115
Target Start/End: Original strand, 49319403 - 49319492
Alignment:
Q  26 ctcagttgacaaagacatgcattattatatgtatggatcagagttcaaacaacggacatcccgcttattcaccttgcaaaaaagtgaatt 115  Q
    |||||||| ||  |||||||||||||||||| | || || | |||| |||  |||||| ||| ||||||||||||| ||||| |||||||    
T  49319403 ctcagttggcatggacatgcattattatatgcaggggtcggggttccaaccccggacaccccacttattcaccttgaaaaaaggtgaatt 49319492  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 16323897 - 16323853
Alignment:
Q  78 cggacatcccgcttattcaccttgcaaaaaagtgaattctaacca 122  Q
    |||||||||| ||||||||| ||  ||||||||||||||||||||    
T  16323897 cggacatcccacttattcactttaaaaaaaagtgaattctaacca 16323853  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 130
Target Start/End: Original strand, 30032820 - 30032927
Alignment:
Q  22 ataactcagttgacaaagacatgcattattatatgtatggatcagagttcaaacaacggacatcccgcttattcaccttgcaaaaaagtgaattctaacc 121  Q
    ||||||||| || |||||||||||||| ||||||| ||||||| | |||| |||  || ||| |||  |||||||| ||  ||||| ||||||| |||||    
T  30032820 ataactcagctgccaaagacatgcattgttatatgcatggatcggggttcgaactccgaaca-cccaattattcactttaaaaaaaggtgaattttaacc 30032918  T
Q  122 attaaacta 130  Q
    | |||||||    
T  30032919 aataaacta 30032927  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 117
Target Start/End: Original strand, 17557037 - 17557129
Alignment:
Q  23 taactcagttgacaaagacatgcattattatatgtatggatcagagttcaaacaacggacatcccgcttattcaccttgcaaaaaagtgaattct 117  Q
    ||||||||||| || ||||||||||| ||||||||| || || | ||||||||  |||||| ||| ||||||||||||  |||||||| ||||||    
T  17557037 taactcagttggcagagacatgcattgttatatgtaggggtcggggttcaaac-ccggacaccccacttattcacctt-aaaaaaagttaattct 17557129  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 56
Target Start/End: Complemental strand, 22867081 - 22867047
Alignment:
Q  22 ataactcagttgacaaagacatgcattattatatg 56  Q
    |||||||||||||||| ||||||||||||||||||    
T  22867081 ataactcagttgacaaggacatgcattattatatg 22867047  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 122
Target Start/End: Original strand, 39684262 - 39684343
Alignment:
Q  40 acatgcattattatatgtatggatcagagttcaaacaacggacatcccgcttattcaccttgcaaaaaagtgaattctaacca 122  Q
    ||||||||| ||||||||| || ||||  || ||||  |||||||||| ||||||||||||  ||||| ||||||||||||||    
T  39684262 acatgcattgttatatgtaggggtcaggatttaaaccccggacatcccacttattcacctt-aaaaaaggtgaattctaacca 39684343  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 130
Target Start/End: Original strand, 18535987 - 18536027
Alignment:
Q  89 cttattcaccttgcaaaaaagtgaattctaaccattaaacta 130  Q
    ||||||||||||| |||||||||||||||||||| |||||||    
T  18535987 cttattcaccttg-aaaaaagtgaattctaaccactaaacta 18536027  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 26560019 - 26560051
Alignment:
Q  26 ctcagttgacaaagacatgcattattatatgta 58  Q
    |||||||||||||||||| ||||||||||||||    
T  26560019 ctcagttgacaaagacatacattattatatgta 26560051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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