View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12181_low_5 (Length: 355)
Name: NF12181_low_5
Description: NF12181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12181_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 211 - 340
Target Start/End: Original strand, 10330419 - 10330548
Alignment:
| Q |
211 |
atgtagttaggtattggtgttgagggggcttgttagctttggagaagaaatttgtttgtttgtgaggttgaattggtggagtgtagggttttattgtgta |
310 |
Q |
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| T |
10330419 |
atgtagttaggtattggtgttgagggggcttgttagctttggagaagaaatttgtttgtttgtgaggttgaattggtggagtgtagggttttattgtcta |
10330518 |
T |
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| Q |
311 |
acatttcattgcaggataatatagagcaca |
340 |
Q |
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| T |
10330519 |
atatttcattgcaggataatgtagagcaca |
10330548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 10330382 - 10330421
Alignment:
| Q |
4 |
atttggtggaagaatatttttagcagtatgagaggtgatg |
43 |
Q |
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| T |
10330382 |
atttggtggaagaatatttttagaattatgagaggtgatg |
10330421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 142
Target Start/End: Complemental strand, 28827358 - 28827249
Alignment:
| Q |
33 |
gagaggtgatgagataagtggagggagatgatttgtgtataatgttattaataaaatagaaaatggtagtaagacgttgttttcacacgagtcgtggcta |
132 |
Q |
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| T |
28827358 |
gagaggtgacgaggtgaatggagggagatggtttttggataatgttactaagaaaataggaaattgtactaatactttgttttggcacgtgtcgttgtta |
28827259 |
T |
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| Q |
133 |
gatggggagg |
142 |
Q |
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| T |
28827258 |
gatgaggagg |
28827249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 149
Target Start/End: Original strand, 24781379 - 24781448
Alignment:
| Q |
80 |
ttaataaaatagaaaatggtagtaagacgttgttttcacacgagtcgtggctagatggggaggtggtaaa |
149 |
Q |
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| T |
24781379 |
ttaagaaaatagaaaatggtagtgaagcgttgtcctggcatgagtcgtggctaggtggggaggtggtaaa |
24781448 |
T |
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