View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12181_low_7 (Length: 247)
Name: NF12181_low_7
Description: NF12181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12181_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 56378615 - 56378838
Alignment:
| Q |
22 |
acatcatcatgccattcaactacaacataccttctgaatctgatgaacaagaagaggcagcaggtagactacatatgcatc---------atcaacagca |
112 |
Q |
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| T |
56378615 |
acatcatcatgccattcaactacaacataccttctgaatctgatgaacaagaagaggcagcaggtagactacatatgcatcatcatcatcatcaacagca |
56378714 |
T |
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| Q |
113 |
gcagcagcaggaggtagtgatgaagaaaaggttcaggacaaaattcacacaggaacagaaggagaaaatgttgaactttgctgagaaagttggatggaaa |
212 |
Q |
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| T |
56378715 |
gcagcagcaggaggtagtgatgaagaaaaggttcaggacaaaattcacacaggaacagaaggagaaaatgttgaactttgctgagaaagttggatggaaa |
56378814 |
T |
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| Q |
213 |
tttcaaaagcaagaggaatctgtg |
236 |
Q |
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| T |
56378815 |
tttcaaaagcaagaggaatctgtg |
56378838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 2494418 - 2494351
Alignment:
| Q |
144 |
ttcaggacaaaattcacacaggaacagaaggagaaaatgttgaactttgctgagaaagttggatggaa |
211 |
Q |
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| T |
2494418 |
ttcaggacaaagtttacacaagatcagaaggataagatgctgaaatttgctgagaaagttgggtggaa |
2494351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 14021574 - 14021521
Alignment:
| Q |
147 |
aggacaaaattcacacaggaacagaaggagaaaatgttgaactttgctgagaaa |
200 |
Q |
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| T |
14021574 |
aggacaaaattcacgcaggaacagaaggataagatgttggagttagctgagaaa |
14021521 |
T |
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