View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12182_high_1 (Length: 666)
Name: NF12182_high_1
Description: NF12182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12182_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 587; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 7 - 649
Target Start/End: Complemental strand, 7971047 - 7970403
Alignment:
| Q |
7 |
ggagaagcagagatagatgcataacaaatgaggtctagtagtgaagagcatgatcatatgatgaataagtggttaaaatacagatagtgatactattcta |
106 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7971047 |
ggagaaacagagatagatgcataacaaatgaggtctagtagtgaagagcatgatcatatgatgaataagtggttaaaatacagatagtgatactattcta |
7970948 |
T |
|
| Q |
107 |
cgaatcacttttaattattttaaacgcttagatgagttttttaagccttggaggctaagacttgtttgatttacattgggtttgaatattagttacaatg |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7970947 |
cgaatcacttttaattattttaaacgcttagatgagttttttaagccttggaggctaagacttgtttgatttacattgggtttgaatattagtgacaatg |
7970848 |
T |
|
| Q |
207 |
atctctcatatgagcttttatatgtgtatgttatatgaacctgtattgtttctctaaactttggtattgtggccatattgctatcatctataccgctata |
306 |
Q |
| |
|
| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7970847 |
acctctcatatgagcttttatatgtgtatgt--tatgaacctgtattgtttctctaaactttggtattgtggccatattgctaccatctataccgctata |
7970750 |
T |
|
| Q |
307 |
gcattttgggtgcaagctgcaatccgtttttgagtacattgattttaagaagaataaattaagaatgatcagcttatgttggttatacttttgattgcat |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7970749 |
gcattttgggtgcaagctgcaatccgtttttgagtacattgattttaagaagaataaattaagaatgatcagcttatgttggttatacttttgattgcat |
7970650 |
T |
|
| Q |
407 |
gatctgctaacaagccttacataaaatct----ctttattttattatagaaaatggttcaaagtctaatttgatgattttcttttttgttgcaattcagt |
502 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7970649 |
ggtctgctaacaagccttacataaaatctcttactttattttattatagaaaatggttcaaagtctaatttgatgattttcgtttttgttgcaattcagt |
7970550 |
T |
|
| Q |
503 |
gtgataatggtcatatcgtttgctctacctgctgtcctaaacttaggaacaagtgtcacaagtgctcgttgcacattagctcaaaacgttgtaaagccat |
602 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
7970549 |
gtgataatggtcatatcgtttgctctacctgctgtcctaaacttaggaacaagtgtcacaagtgctcattgcacattagctcaaaacgttgtatagccat |
7970450 |
T |
|
| Q |
603 |
tgagaatctattgcaatctatcgaaatgtcatgtctgaatgcaaaac |
649 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7970449 |
tgagaatctattgcaatctatcgaaatgtcatgtctgaatgcaaaac |
7970403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 348 - 648
Target Start/End: Original strand, 37576392 - 37576707
Alignment:
| Q |
348 |
attttaagaagaataaattaagaatgatcagctt-atgttggttatacttttgattgcatgatctgctaacaagccttacataaaat-ctctt------- |
438 |
Q |
| |
|
||||| ||||||||||| |||||||||| || || ||||||||||||||||||||||||| | ||||||||||||||||| | ||| ||||| |
|
|
| T |
37576392 |
attttgagaagaataaactaagaatgattagatttatgttggttatacttttgattgcataacttgctaacaagccttacaaagaattctcttattttat |
37576491 |
T |
|
| Q |
439 |
------tattttattatagaaaatggttcaaagtctaatttgatgattttcttttttgttgcaattcagtgtgataatggtcatatcgtttgctctacct |
532 |
Q |
| |
|
||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
37576492 |
ttattttattttattttagcaggtggttcaaagtctaatttgatgattttcttttttgttgcaattcagtgtgataatggtcatattgcttgctctacct |
37576591 |
T |
|
| Q |
533 |
gctgtcctaaacttaggaacaagtgtcacaagtgctcgttgcacattagctcaaaacgttgtaaagccattgagaatctattgcaatctatcgaaatgtc |
632 |
Q |
| |
|
||| ||||||||||||||||| ||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||| |
|
|
| T |
37576592 |
gctatcctaaacttaggaacacgtgtcccaagtgctcattgcgcattagctcaaaacgttgtaaagccattgagaatctattgctatctattgaattgtc |
37576691 |
T |
|
| Q |
633 |
atgtctgaatgcaaaa |
648 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
37576692 |
atgttcgaatgcaaaa |
37576707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 37576162 - 37576200
Alignment:
| Q |
16 |
gagatagatgcataacaaatgaggtctagtagtgaagag |
54 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
37576162 |
gagaaagatgcataacaaatgatgtctagtagtgaagag |
37576200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 164; Significance: 3e-87; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 325 - 649
Target Start/End: Original strand, 17582762 - 17583092
Alignment:
| Q |
325 |
gcaatccgtttttgagtacattgattttaagaagaataaattaagaatgatcagctt-atgttggttatacttttgattgcatgatctgctaacaagcct |
423 |
Q |
| |
|
||||||||| |||||||||| | |||| |||||||||||| |||||||| ||||| ||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
17582762 |
gcaatccgtcattgagtacatagcttttgtgaagaataaattgagaatgattagctttatgttggttatacttttgattgcataatttgctaacaagcct |
17582861 |
T |
|
| Q |
424 |
tacata-aaatctctttattttattatagaaaatggttcaaagtctaatttgatgattttcttttttgttgcaattc-----agtgtgataatggtcata |
517 |
Q |
| |
|
|||| | |||||| ||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||| ||||| |
|
|
| T |
17582862 |
tacaaataaatct-tttattttattctaacaaatggttcaaagtctaatttgatgattttctttgatgttgcaataccttgcagtgtgataatgatcata |
17582960 |
T |
|
| Q |
518 |
tcgtttgctctacctgctgtcctaaacttaggaacaagtgtcacaagtgctcgttgcacattagctcaaaacgttgtaaagccattgagaatctattgca |
617 |
Q |
| |
|
| ||||||||||| |||||| ||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
17582961 |
ttgtttgctctacttgctgtactaaacttaggaacaagtgtcacgagtgctcattgcgcattagctcaaaacgttgtaaagtcattgagaatctattgct |
17583060 |
T |
|
| Q |
618 |
atctatcgaaatgtcatgtctgaatgcaaaac |
649 |
Q |
| |
|
||||||| |||| |||| || |||||||||| |
|
|
| T |
17583061 |
atctatcaaaatttcatatccaaatgcaaaac |
17583092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 294 - 647
Target Start/End: Original strand, 17590628 - 17590997
Alignment:
| Q |
294 |
ctataccgctatagcattttgggtgcaagctgcaatccgtttttgagtacattgattttaagaagaataaattaagaatgatcagct-tatgttggttat |
392 |
Q |
| |
|
||||||| ||||||| |||| || || ||| ||||||||| |||||||||| |||||| |||||||||||| |||||||| |||| ||||||| |||| |
|
|
| T |
17590628 |
ctataccactatagcgttttcggggcgagccgcaatccgtaattgagtacatagattttgtgaagaataaattgagaatgattagctgtatgttgattat |
17590727 |
T |
|
| Q |
393 |
acttttgattgcatgatctgctaacaagccttacata-aaatctctt---------tattttattatagaaaatggttcaaagtctaatttgatgatttt |
482 |
Q |
| |
|
||||||| |||||| | ||||||||||||| ||| | ||||||||| ||||||||| || |||| | ||||||||||||||||||||||| |
|
|
| T |
17590728 |
acttttggttgcataacttgctaacaagcctcacaaagaaatctcttattttattatattttattctaacaaatcgatcaaagtctaatttgatgatttt |
17590827 |
T |
|
| Q |
483 |
cttttttgttgcaattc-----agtgtgataatggtcatatcgtttgctctacctgctgtcctaaacttaggaacaagtgtcacaagtgctcgttgcaca |
577 |
Q |
| |
|
||||| || ||| || | ||||||||||||||||||| |||||||||||||||||| | ||||||| ||||||||||||| ||||||| ||||||| |
|
|
| T |
17590828 |
cttttgtgctgcgataccttgtagtgtgataatggtcatattgtttgctctacctgctgtacgaaacttaagaacaagtgtcacgagtgctcattgcaca |
17590927 |
T |
|
| Q |
578 |
ttagctcaaaacgttgtaaagccattgagaatctattgcaatctatcgaaatgtcatgtctgaatgcaaa |
647 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||| ||||||||| |
|
|
| T |
17590928 |
ttagctcaaaacgttgcaaagccattgagaatctattgctatctatcaaaatgtcatgttcgaatgcaaa |
17590997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 21 - 203
Target Start/End: Original strand, 17590343 - 17590524
Alignment:
| Q |
21 |
agatgcataacaaatgaggtctagtagtgaagagcatgatcata----tgatgaataagtggttaaaatacagatagtgatactattctacgaatcactt |
116 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||| ||| ||||||||||||||||| | ||||||||| ||||| | || |||| | |
|
|
| T |
17590343 |
agatgcaaaacaaatgaggtctagtagtgaagtaagtgagcatgacgttgatgaataagtggttaga-----gatagtgattctatttaaagagtcacct |
17590437 |
T |
|
| Q |
117 |
ttaattattttaaacgcttagatgagtt-ttttaagccttggaggctaagacttgtttgatttacattgggtttgaatattagttaca |
203 |
Q |
| |
|
|| |||||||||| |||| ||||| || |||||||||||||||| |||||||| |||| |||| ||||||||| ||||||||||||| |
|
|
| T |
17590438 |
ttgtttattttaaatgcttggatgaattattttaagccttggaggataagacttatttgcttta-attgggtttaaatattagttaca |
17590524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 125 - 207
Target Start/End: Complemental strand, 37379836 - 37379755
Alignment:
| Q |
125 |
tttaaacgcttagatgagtt-ttttaagccttggaggctaagacttgtttgatttacattgggtttgaatattagttacaatga |
207 |
Q |
| |
|
|||||||||||| |||||| |||||| ||||||||||||| |||| ||| |||| |||||||||| ||||| || ||||||| |
|
|
| T |
37379836 |
tttaaacgctta--tgagttattttaaaccttggaggctaaaacttaattgctttatattgggtttggatattggtaacaatga |
37379755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 153; Significance: 9e-81; HSPs: 16)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 349 - 647
Target Start/End: Original strand, 28474144 - 28474447
Alignment:
| Q |
349 |
ttttaagaagaataaattaagaatgatcagctt-atgttggttatacttttgattgcatgatctgctaacaagccttacataaaatctctttattttatt |
447 |
Q |
| |
|
|||| ||||||||| ||| |||||||| | ||| ||||||||||||||||||||| || | ||||||||||||||||| |||||||| |||||||| |
|
|
| T |
28474144 |
ttttgagaagaatatattgagaatgattacctttatgttggttatacttttgattacaaaacttgctaacaagccttacaatgaatctctt-attttatt |
28474242 |
T |
|
| Q |
448 |
atagaaaatggttcaaagtctaatttgatgattttcttttttgttgcaat-----tcagtgtgataatggtcatatcgtttgctctacctgctgtcctaa |
542 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
28474243 |
ctaacaaatggttcaaagtataatttgatgattttcttttatgttgcaatacctttcagtgtgataatggtcatattgtttgctctacctgctgtactaa |
28474342 |
T |
|
| Q |
543 |
acttaggaacaagtgtcacaagtgctcgttgcacattagctcaaaacgttgtaaagccattgagaatctattgcaatctatcgaaatgtcatgtctgaat |
642 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||| |||||| |||||| |||| |
|
|
| T |
28474343 |
acttaggaacaagtgtcatgagtgctcgttgcgcattagctcaaaacgttgtaaagccattgagaatatattgttatctattgaaatgccatgtccgaat |
28474442 |
T |
|
| Q |
643 |
gcaaa |
647 |
Q |
| |
|
||||| |
|
|
| T |
28474443 |
gcaaa |
28474447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 438 - 649
Target Start/End: Complemental strand, 32652533 - 32652322
Alignment:
| Q |
438 |
ttattttattatagaaaatggttcaaagtctaatttgatgattttcttttttgttgcaattcagtgtgataatggtcatatcgtttgctctacctgctgt |
537 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
32652533 |
ttattttattttagtaaatggttcaaagtctaacttgatgattttcttttatgttgcaattcagtgtgataatggtcatattgtttgctctacctgcagt |
32652434 |
T |
|
| Q |
538 |
cctaaacttaggaacaagtgtcacaagtgctcgttgcacattagctcaaaacgttgtaaagccattgagaatctattgcaatctatcgaaatgtcatgtc |
637 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||| |||||||||||||| |||||||||| |||||||||||||| |||||| ||||||||||||| |
|
|
| T |
32652433 |
actaaacttagaaacaagtgtcacaattgctcgttgcccattagctcaaaacattgtaaagccgctgagaatctattgctatctattgaaatgtcatgtc |
32652334 |
T |
|
| Q |
638 |
tgaatgcaaaac |
649 |
Q |
| |
|
||||||||||| |
|
|
| T |
32652333 |
cgaatgcaaaac |
32652322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 336 - 648
Target Start/End: Complemental strand, 32656902 - 32656578
Alignment:
| Q |
336 |
ttgagtacattgattttaagaagaataaattaagaatgatcagct-tatgttggttatacttttgattgcatgatctgctaacaagcctt-acata-aaa |
432 |
Q |
| |
|
|||||| |||||||||| ||||||||||||| |||||||| | || |||||||||||||||||| |||||||| |||||||||||||| ||||| ||| |
|
|
| T |
32656902 |
ttgagttcattgattttgagaagaataaattgagaatgattaactatatgttggttatacttttaattgcatggcttgctaacaagcctttacatagaaa |
32656803 |
T |
|
| Q |
433 |
tctc---------tttattttattatagaaaatggttcaaagtctaatttgatgattttcttttttgttgcaattcagtgtgataatggtcatatcgttt |
523 |
Q |
| |
|
| || ||||||||||| ||| |||||||||| || ||||||||| ||||||||||||||||||| |||||||| ||||||||||| |||| |
|
|
| T |
32656802 |
tgtcctattttattttattttattctagcaaatggttcattgtataatttgattgttttcttttttgttgcaatgcagtgtgacaatggtcatattgttt |
32656703 |
T |
|
| Q |
524 |
gctctacctgctgtcctaaacttaggaacaagtgtcacaagtgctcgttgcacattagctcaaaacgttgtaaagccattgagaatctattgcaatctat |
623 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||| |||||||||| |||| || |||||| |||| ||||||||||||||||||||||||| |||| | |
|
|
| T |
32656702 |
gctctacctgctgtcctaaacttggaaacaagtgttacaagtgctcattgcccactagctccaaacattgtaaagccattgagaatctattggtatctct |
32656603 |
T |
|
| Q |
624 |
cgaaatgtcatgtctgaatgcaaaa |
648 |
Q |
| |
|
||||||||||||| |||||||||| |
|
|
| T |
32656602 |
tgaaatgtcatgtccgaatgcaaaa |
32656578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 437 - 643
Target Start/End: Complemental strand, 32662676 - 32662470
Alignment:
| Q |
437 |
tttattttattatagaaaatggttcaaagtctaatttgatgattttcttttttgttgcaattcagtgtgataatggtcatatcgtttgctctacctgctg |
536 |
Q |
| |
|
||||||||||| ||| ||||||||| ||||||||||||| |||||||||| ||||||| | |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
32662676 |
tttattttattctagcaaatggttcttagtctaatttgattattttcttttatgttgcactacagtgtgataatggtcatattttttgctctacctgcta |
32662577 |
T |
|
| Q |
537 |
tcctaaacttaggaacaagtgtcacaagtgctcgttgcacattagctcaaaacgttgtaaagccattgagaatctattgcaatctatcgaaatgtcatgt |
636 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
32662576 |
tcctaaacttgggaacaagcgtcacaagtgctcgttgcgtattagctcaaaacgttgtaaagccattgagaatctattgctatctattgaaatgtcatgt |
32662477 |
T |
|
| Q |
637 |
ctgaatg |
643 |
Q |
| |
|
| ||||| |
|
|
| T |
32662476 |
ccgaatg |
32662470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 336 - 648
Target Start/End: Original strand, 32739361 - 32739678
Alignment:
| Q |
336 |
ttgagtacattgattttaagaagaataaattaagaatgatcagcttatgttggttatacttttgattgcatgatctgctaacaagccttacataaaa--- |
432 |
Q |
| |
|
|||||||||| |||||||||||||||||| | || ||||| ||||| ||||||||||||||||||| | || | ||||||||||||||| | | || |
|
|
| T |
32739361 |
ttgagtacatagattttaagaagaataaacttagtatgattagctt-tgttggttatacttttgatcgtataacttgctaacaagccttataaagaaatg |
32739459 |
T |
|
| Q |
433 |
tct--ctttattttattatagaaaatggttcaaagtctaatttgatgattttctttttt-gttgcaattcagtgtgataatggtcatatcgtttgctcta |
529 |
Q |
| |
|
||| |||||||||||||||| || |||||||||||| ||||||||| |||| |||||| | |||||| |||||||||||||||||||| || ||||||| |
|
|
| T |
32739460 |
tcttactttattttattatagcaattggttcaaagtcgaatttgatggttttgtttttttgctgcaatacagtgtgataatggtcatattgtctgctcta |
32739559 |
T |
|
| Q |
530 |
cctgctgtcctaaacttaggaacaagtgtcacaagtgctcgttgcacattagctcaaaacgttgtaaagccattgagaatctattgcaatctatcgaaat |
629 |
Q |
| |
|
| ||||||||||||||| |||||||||||||||||||||| ||| ||| ||||| ||||| ||| ||||||||||||||||||||| |||||| ||| | |
|
|
| T |
32739560 |
cttgctgtcctaaacttcggaacaagtgtcacaagtgctcattgtccatcagctctaaacgctgtgaagccattgagaatctattgcgatctattgaagt |
32739659 |
T |
|
| Q |
630 |
gtcatgtctgaatgcaaaa |
648 |
Q |
| |
|
| |||||| |||||||||| |
|
|
| T |
32739660 |
gccatgtccgaatgcaaaa |
32739678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 437 - 637
Target Start/End: Original strand, 32857635 - 32857834
Alignment:
| Q |
437 |
tttattttattatagaaaatggttcaaagtctaatttgatgattttcttttttgttgcaattcagtgtgataatggtcatatcgtttgctctacctgctg |
536 |
Q |
| |
|
|||||| |||| ||| ||||||||||| |||||||||| ||||| ||||||||||||| |||||| | ||||||||||||| ||||||||||||||||| |
|
|
| T |
32857635 |
tttattatattctagcaaatggttcaacgtctaatttgctgattc-cttttttgttgcatttcagtctaataatggtcatattgtttgctctacctgctg |
32857733 |
T |
|
| Q |
537 |
tcctaaacttaggaacaagtgtcacaagtgctcgttgcacattagctcaaaacgttgtaaagccattgagaatctattgcaatctatcgaaatgtcatgt |
636 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||| ||||||| ||||| |||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
32857734 |
tcctaaacttaggaacaagtgttacaagtgctccttgcccattagcgcaaaatgttgtaaagccattgagaatttattgctatctatcgaaatgtcatgt |
32857833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 350 - 635
Target Start/End: Complemental strand, 32558682 - 32558391
Alignment:
| Q |
350 |
tttaagaagaataaattaagaatgatcagctta-tgttggttatacttttgattgcatgatctgctaacaagccttacata-aaatct----ctttattt |
443 |
Q |
| |
|
||||||||||| || || |||||||| || || ||||||||||||||||||||||| || |||||||||||||| || | |||||| |||||||| |
|
|
| T |
32558682 |
tttaagaagaaaaatttgagaatgattagttttgtgttggttatacttttgattgcacgacatgctaacaagccttgcaaagaaatctcttactttattt |
32558583 |
T |
|
| Q |
444 |
tattatagaaaatggttcaaagtctaatttgatgattttcttttttgttgcaattcagtgtgataatggtcatatcgtttgctctacctgctgtcctaaa |
543 |
Q |
| |
|
|||| || ||||||||||||||||||||||||| | |||||| ||||||||||||||| ||||||| |||||| ||||||||||| |||| |||| || |
|
|
| T |
32558582 |
tattctacctaatggttcaaagtctaatttgatgactatcttttatgttgcaattcagtgcgataatgatcatattgtttgctctacttgctttcctcaa |
32558483 |
T |
|
| Q |
544 |
cttaggaacaagtgtcacaagtgctcgttgcacattagctcaaaacgttgtaaagccattgagaatctattgcaatctatcgaaatgtcatg |
635 |
Q |
| |
|
|||| |||||| |||||||||||||| ||| ||||||||||||| |||| |||| |||||||||| ||| |||||||||| ||||| |||| |
|
|
| T |
32558482 |
cttatgaacaactgtcacaagtgctcaatgcccattagctcaaaatgttgcaaagtcattgagaatatatcgcaatctatccaaatgccatg |
32558391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 294 - 648
Target Start/End: Original strand, 32762222 - 32762588
Alignment:
| Q |
294 |
ctataccgctatagcattttgggtgcaagctgcaatccgtttttgagtacattgattttaagaagaataaattaagaatgatcagctt-atgttggttat |
392 |
Q |
| |
|
|||| |||||||||| |||||| || | |||||||||| |||||||||| ||||| |||| |||| ||| | |||||| ||||| ||| | ||||| |
|
|
| T |
32762222 |
ctatgccgctatagcgttttggaggctatttgcaatccgtcattgagtacataaattttgagaataatatattgaaaatgattagctttatggttgttat |
32762321 |
T |
|
| Q |
393 |
acttttgattgcatgatct-gctaacaagccttacataaa-atctctt----tattttattatagaaaatggttcaaagtctaatttgatgattttcttt |
486 |
Q |
| |
|
|||||||||| ||| | || ||| ||| ||||||| | | ||||||| ||||||||| || |||||||||||| |||||||||||||||| |||| |
|
|
| T |
32762322 |
acttttgatttcataaacttgctttcaatccttacaaagacatctcttattttattttattctaacaaatggttcaaactctaatttgatgatttgcttt |
32762421 |
T |
|
| Q |
487 |
tttgttgcaat-----tcagtgtgataatggtcatatcgtttgctctacctgctgtcctaaacttaggaacaagtgtcacaagtgctcgttgcacattag |
581 |
Q |
| |
|
| ||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||| || |||||| ||| | ||||| |
|
|
| T |
32762422 |
tatgttgcaatacctttcagtgcgataatggtcatattatttgctctacctgctgtcctaaactcaggaacaagtgtttcatgtgctctttgaatattag |
32762521 |
T |
|
| Q |
582 |
ctcaaaacgttgtaaagccattgagaatctattgcaatctatcgaaatgtcatgtctgaatgcaaaa |
648 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
32762522 |
ctcaaaacgttgtaaatacattgagaacgtattgcaatctattgaaatgtcatgtccgaatgcaaaa |
32762588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 385 - 649
Target Start/End: Original strand, 25477214 - 25477483
Alignment:
| Q |
385 |
ttggttatacttttgattgcatgatctgctaacaagccttacata-aaatctctttattttattatagaaaatggttcaaagtctaatttgatga-tttt |
482 |
Q |
| |
|
||||||||||||||||| ||| | ||||||||||||||||| | |||| | ||| || | || ||||||||| ||||||||||||||||||| |||| |
|
|
| T |
25477214 |
ttggttatacttttgat-gcagaacttgctaacaagccttacaaagaaatatgttttttct-ttctagaaaatgcttcaaagtctaatttgatgggtttt |
25477311 |
T |
|
| Q |
483 |
cttttttgttgcaattcagtgtgataatggtcatatcgtttgctctacctgctgtcctaaacttaggaacaagtgtcacaagtgctcgttgcacattagc |
582 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||| |||||||||||||||||| ||||||| ||||||||||||| |||||||| |||||||||||| |
|
|
| T |
25477312 |
tttttttgttgcaatttagtgtgataatgggcatattgtttgctctacctgctgtgataaacttgggaacaagtgtcagaagtgctcattgcacattagc |
25477411 |
T |
|
| Q |
583 |
tc-aaaacgttgtaaagccattgaga----atctattgcaatctatcgaaatgtcatgtctgaatgcaaaac |
649 |
Q |
| |
|
|| |||| |||||||||||||||||| || ||||||||| ||| ||||||||||||| ||||| ||||| |
|
|
| T |
25477412 |
tcaaaaatgttgtaaagccattgagaatatatatattgcaatatatggaaatgtcatgtccgaatgaaaaac |
25477483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 444 - 644
Target Start/End: Original strand, 32767287 - 32767484
Alignment:
| Q |
444 |
tattatagaaaatggttcaaagtctaatttgatgattttcttttttgttgcaattcagtgtgataatggtcatatcgtttgctctacctgctgtcctaaa |
543 |
Q |
| |
|
|||||||| || || | ||||||||||||| |||| |||| |||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
32767287 |
tattatagcaactgttccaaagtctaatttaatgaatttcatttttgtttcaattcagtgtgataatggtcatattgtttgctctacctgctctcctaaa |
32767386 |
T |
|
| Q |
544 |
cttaggaacaagtgtcacaagtgctcgttgcacattagctcaaaacgttgtaaagccattgagaatctattgcaatctatcgaaatgtcatgtctgaatg |
643 |
Q |
| |
|
||||||||||||||| |||||| |||| |||||||||||||| |||||||||||||||||||||| ||| |||||| ||||| ||||||| ||||| |
|
|
| T |
32767387 |
cttaggaacaagtgt---tggtgctcattgcccattagctcaaaacattgtaaagccattgagaatctaatgctatctattgaaatatcatgtccgaatg |
32767483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 459 - 623
Target Start/End: Original strand, 25468977 - 25469135
Alignment:
| Q |
459 |
ttcaaagtctaatttgatgattttcttttttgttgcaattcagtgtgataatggtcatatcgtttgctctacctgctgtcctaaacttaggaacaagtgt |
558 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||| ||| |||||| |
|
|
| T |
25468977 |
ttcaaagtctaatttgatggtttatttttttgttgcaattcagtgtgataatggccatattgtttgctctacctgctgtgataaacttgagaagaagtgt |
25469076 |
T |
|
| Q |
559 |
cacaagtgctcgttgcacattagctcaaaacgttgtaaagccattgagaatctattgcaatctat |
623 |
Q |
| |
|
| ||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
25469077 |
ccgaagtgct------acattagctcgaaacgttgtaaagccattgagaatatattgcaatctat |
25469135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 440 - 649
Target Start/End: Original strand, 32709570 - 32709778
Alignment:
| Q |
440 |
attttattatagaaaatggttcaaagtctaatttgatgattttcttttttgttgcaattcagtgtgataatggtcatatcgtttgctctacctgctgtcc |
539 |
Q |
| |
|
|||||||| ||||||||| || ||| ||||||||||||||| || | ||||||||||||||||| |||||||||||| |||||||| ||||||||| |
|
|
| T |
32709570 |
attttattctagaaaatgattaaaaagctaatttgatgattt-ctcatatgttgcaattcagtgtgttaatggtcatattgtttgctcaacctgctgtga |
32709668 |
T |
|
| Q |
540 |
taaacttaggaacaagtgtcacaagtgctcgttgcacattagctcaaaacgttgtaaagccattgagaatctattgcaatctatcgaaatgtcatgtctg |
639 |
Q |
| |
|
||||| | |||||||||||| ||| ||||| | ||| ||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||| | | |
|
|
| T |
32709669 |
taaacatcggaacaagtgtcccaaatgctcaaaacgtattcgcttaaaacgttgtaaagccattgagaatcttttgcaatctttcgaaatgtcatgcccg |
32709768 |
T |
|
| Q |
640 |
aatgcaaaac |
649 |
Q |
| |
|
|||| ||||| |
|
|
| T |
32709769 |
aatgaaaaac |
32709778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 439 - 509
Target Start/End: Complemental strand, 32660899 - 32660829
Alignment:
| Q |
439 |
tattttattatagaaaatggttcaaagtctaatttgatgattttcttttttgttgcaattcagtgtgataa |
509 |
Q |
| |
|
||||||||| ||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
32660899 |
tattttattctagcaaatggttcaacgtctaatttgatgagtttcttttttgttgcaattcagtgtgataa |
32660829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 299 - 406
Target Start/End: Original strand, 32857482 - 32857590
Alignment:
| Q |
299 |
ccgctatagcattttgggtgcaagctgcaatccgtttttgagtacattgattttaagaagaataaattaagaatgatcagc-ttatgttggttatacttt |
397 |
Q |
| |
|
|||||| ||| ||||| | || ||| ||||||| | |||||||||| |||||| ||||||||||||| ||||| || ||| |||||||||||||||||| |
|
|
| T |
32857482 |
ccgctagagcgttttgagggccagccgcaatccatcgttgagtacatagattttgagaagaataaattgagaataattagctttatgttggttatacttt |
32857581 |
T |
|
| Q |
398 |
tgattgcat |
406 |
Q |
| |
|
|| |||||| |
|
|
| T |
32857582 |
tgcttgcat |
32857590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 198
Target Start/End: Complemental strand, 32661215 - 32661124
Alignment:
| Q |
108 |
gaatcacttttaattattttaaacgcttagatgagtt-ttttaagccttggaggctaagacttgtttgatttacattgggtttgaatattag |
198 |
Q |
| |
|
||||||||||| || || |||| | ||||||||||| ||||||| |||||| | | |||||| |||| ||||||||||||||| ||||||| |
|
|
| T |
32661215 |
gaatcacttttgtttgttataaatgattagatgagttcttttaagtcttggaagttcagacttatttgctttacattgggtttggatattag |
32661124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 32761912 - 32761949
Alignment:
| Q |
17 |
agatagatgcataacaaatgaggtctagtagtgaagag |
54 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
32761912 |
agatagatgctttacaaatgaggtctagtagtgaagag |
32761949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 453 - 648
Target Start/End: Original strand, 16756349 - 16756544
Alignment:
| Q |
453 |
aaatggttcaaagtctaatttgatgattttcttttttgttgcaattcagtgtgataatggtcatatcgtttgctctacctgctgtcctaaacttaggaac |
552 |
Q |
| |
|
|||||||| |||||||||||| ||||| | | || ||||| |||||||||||||||||||||||| ||||||||||||||||| |||| || ||||| |
|
|
| T |
16756349 |
aaatggttgaaagtctaatttaatgatatacaattatgttgaaattcagtgtgataatggtcatattgtttgctctacctgctgctctaagtttgggaac |
16756448 |
T |
|
| Q |
553 |
aagtgtcacaagtgctcgttgcacattagctcaaaacgttgtaaagccattgagaatctattgcaatctatcgaaatgtcatgtctgaatgcaaaa |
648 |
Q |
| |
|
|||||| |||||||||| |||||||| ||||||||||| |||| |||||||||||||||||| |||| ||||| |||||||||||| |||| |
|
|
| T |
16756449 |
aagtgtgacaagtgctcaaaatgcattagcttaaaacgttgtagagcctttgagaatctattgcaatatatcaaaatgccatgtctgaatgaaaaa |
16756544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 436 - 648
Target Start/End: Original strand, 16751851 - 16752063
Alignment:
| Q |
436 |
ctttattttattatagaaaatggttcaaagtctaatttgatgattttcttttttgttgcaattcagtgtgataatggtcatatcgtttgctctacctgct |
535 |
Q |
| |
|
|||||||||| | || |||||||||||||||||||||| |||||| | ||| ||||| |||||||||| | | ||||||||| ||||||| |||||||| |
|
|
| T |
16751851 |
ctttattttactctatcaaatggttcaaagtctaatttggtgatttacatttatgttgaaattcagtgtaaaactggtcatattgtttgctttacctgct |
16751950 |
T |
|
| Q |
536 |
gtcctaaacttaggaacaagtgtcacaagtgctcgttgcacattagctcaaaacgttgtaaagccattgagaatctattgcaatctatcgaaatgtcatg |
635 |
Q |
| |
|
|| |||| ||| |||||||||| |||||||||| |||||||| ||||||||| | |||| |||||||||||||||||| |||| |||||||||| |
|
|
| T |
16751951 |
gttctaagcttgggaacaagtgcgacaagtgctcaaaatgcattagcttaaaacgttgcagagcctttgagaatctattgcaatatatcaaaatgtcatg |
16752050 |
T |
|
| Q |
636 |
tctgaatgcaaaa |
648 |
Q |
| |
|
| ||||| |||| |
|
|
| T |
16752051 |
cccgaatgaaaaa |
16752063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 196
Target Start/End: Complemental strand, 25398468 - 25398390
Alignment:
| Q |
121 |
ttattttaaacgcttagatgagtt-ttttaagccttggaggct--aagacttgtttgatttacattgggtttgaatatt |
196 |
Q |
| |
|
|||||||||| ||||||||||||| |||||| |||| ||||| || |||| ||||||||| |||||||||||||||| |
|
|
| T |
25398468 |
ttattttaaatgcttagatgagttgttttaaatcttgaaggctctaaaacttatttgatttatattgggtttgaatatt |
25398390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 145 - 207
Target Start/End: Complemental strand, 29506676 - 29506614
Alignment:
| Q |
145 |
ttttaagccttggaggctaagacttgtttgatttacattgggtttgaatattagttacaatga |
207 |
Q |
| |
|
|||||||||| ||| ||||| |||| |||| |||| |||||||||||||||||| ||||||| |
|
|
| T |
29506676 |
ttttaagcctgggaagctaaaacttatttgctttatgttgggtttgaatattagtaacaatga |
29506614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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