View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12182_high_15 (Length: 305)
Name: NF12182_high_15
Description: NF12182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12182_high_15 |
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| [»] scaffold0263 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 166; Significance: 7e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 60 - 286
Target Start/End: Original strand, 21898119 - 21898357
Alignment:
| Q |
60 |
aaaaggttcacgggatacgtgtgtagatagggtggaggggaatgg------------agaatggagaggttgaaagagggaagggaggtccatgccttgg |
147 |
Q |
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| T |
21898119 |
aaaaggttcacgagatatgtgtgtagatagggtggaggggaatggagattgtgatggagaatggagaggttgaaagagggaagggaggtccatgccttgg |
21898218 |
T |
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| Q |
148 |
aagtattaccatgtaaagtggtgttggattagtttgagtacaattttgtgggtgttttaccttttcgtattgaactgaaagtgttgcacacttcaatctt |
247 |
Q |
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| T |
21898219 |
aagtattaccatgtaaagtggtgttggattagttggagtacaattttgtgggtgttttagctattcgtattgaactgaaagtgttgcagacttcaatctt |
21898318 |
T |
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| Q |
248 |
tatggagggttggaatggcatcaaggtgtatgctatggg |
286 |
Q |
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| T |
21898319 |
tatggagggttggaatggcatcaagatgtatgccatggg |
21898357 |
T |
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Target: scaffold0263 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0263
Description:
Target: scaffold0263; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 289
Target Start/End: Complemental strand, 11550 - 11510
Alignment:
| Q |
249 |
atggagggttggaatggcatcaaggtgtatgctatgggtga |
289 |
Q |
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| T |
11550 |
atggagggatggagtggcatcaaggtgtttgctatgggtga |
11510 |
T |
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