View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12182_high_5 (Length: 476)
Name: NF12182_high_5
Description: NF12182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12182_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 10 - 460
Target Start/End: Complemental strand, 37901970 - 37901520
Alignment:
| Q |
10 |
cctgtgcagcaaagccatgaaatgcataacctccaatcattgcattccaagttatcacatctttatagagtttcatctcgttaaacacatggcgtgcatc |
109 |
Q |
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| T |
37901970 |
cctgtgcagcaaagccatgaaatgcataacctccaatcattgcattccaagttatcacatctttatagagtttcatctcgttaaacacatggcgtgcatc |
37901871 |
T |
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| Q |
110 |
accaatttccccacatctcgagtacatagtaatgagggaattatttattggcaaatcaggaacaacagtctttgtgacaaactgatgtatctgcttacca |
209 |
Q |
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| T |
37901870 |
accaatttccccacatctcgagtacatggtaatgagggaattatttattggcaaatcaggaacaacagtctttgtgacaaactgatgtatctgcttacca |
37901771 |
T |
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| Q |
210 |
aggtaaagatcaaccaacccagtacttacactaagaattgaagacagagtgtgcctatctggtctctctcccttaagctgcatctgagaaaatagctcaa |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37901770 |
aggtaaagatcaaccaacccagtacttacactaagaattgaagacagagtgtgcctatctggtctctctcccttaagctgcatctgagaaaatagctcaa |
37901671 |
T |
|
| Q |
310 |
tagcacctttatagtcttcatttttctcgtagccagctattaccgagttccacgagatcaggtttttgtggggcatattctcaaagaactctttcacacg |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37901670 |
tagcacctttatagtcttcatttttctcgtagccagctattaccgagttccacgagatcaggtttttgtggggcatattctcaaagaactctttcacacg |
37901571 |
T |
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| Q |
410 |
tttcaaatcaccaatctgagaaaacccggatattatcgaattccatgaaag |
460 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
37901570 |
tttcaaatcaccaatctgagaaaacccggatattattgaattccatgaaag |
37901520 |
T |
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