View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12182_high_6 (Length: 472)
Name: NF12182_high_6
Description: NF12182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12182_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 134; Significance: 1e-69; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 14 - 233
Target Start/End: Complemental strand, 17499435 - 17499215
Alignment:
| Q |
14 |
gtgttcatgattccactaataaaaggaatatgtgtgaccataatannnnnnnn--caaaatctacttgcatgcgatggatttaactatagtcaccaacca |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||| |||||||||| |
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| T |
17499435 |
gtgttcatgattccactaataaaaggaatatgtgtgaccataatattttttttttcaaaaaccacttgcatgcgatggatttaactatattcaccaacca |
17499336 |
T |
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| Q |
112 |
gaaaacataagtctcataccctcnnnnnnntgcgaacattacacgatcttcacaaggaccacaaaacaattttttaaactagtatgaagaaaaccaacct |
211 |
Q |
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| T |
17499335 |
gaaaacataagtctcataccct-aaaaaaatgagagcattacacgatcttcacaaggaccacaaaacaatttttcaaactagtatgaagaaaaccaacct |
17499237 |
T |
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| Q |
212 |
ctcattatttccccacctaaac |
233 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
17499236 |
ctcattatttccccacctaaac |
17499215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 14 - 233
Target Start/End: Original strand, 17553779 - 17553999
Alignment:
| Q |
14 |
gtgttcatgattccactaataaaaggaatatgtgtgaccataatannnnnnnn--caaaatctacttgcatgcgatggatttaactatagtcaccaacca |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||| |||||||||| |
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| T |
17553779 |
gtgttcatgattccactaataaaaggaatatgtgtgaccataatattttttttttcaaaaaccacttgcatgcgatggatttaactatattcaccaacca |
17553878 |
T |
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| Q |
112 |
gaaaacataagtctcataccctcnnnnnnntgcgaacattacacgatcttcacaaggaccacaaaacaattttttaaactagtatgaagaaaaccaacct |
211 |
Q |
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| T |
17553879 |
gaaaacataagtctcataccct-aaaaaaatgagagcattacacgatcttcacaaggaccacaaaacaatttttcaaactagtatgaagaaaaccaacct |
17553977 |
T |
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| Q |
212 |
ctcattatttccccacctaaac |
233 |
Q |
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|||||||||||||||||||||| |
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| T |
17553978 |
ctcattatttccccacctaaac |
17553999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 291 - 453
Target Start/End: Complemental strand, 17499224 - 17499048
Alignment:
| Q |
291 |
ccacctaaacacatagttactgcacacttgatgatctagaaaaggacatcaccaaaaacgtgagaatcctactcaagaggtc--------------tcat |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
17499224 |
ccacctaaacacatagttactgcacacttgatgatctagaaaaggacatcaccaaaaacgtgagaatcctactcaagaggtcatcacagaaaaatctcat |
17499125 |
T |
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| Q |
377 |
aatatccacctattattgtattgtatatatccacaagaaccaactgaaactatctttcacgttgagtaggagtttga |
453 |
Q |
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| T |
17499124 |
aatatccacctattattgtattgtatatatccacaagaaccaactgaaactatctttcacgttgagtaggagtttga |
17499048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 291 - 453
Target Start/End: Original strand, 17553990 - 17554166
Alignment:
| Q |
291 |
ccacctaaacacatagttactgcacacttgatgatctagaaaaggacatcaccaaaaacgtgagaatcctactcaagaggtc--------------tcat |
376 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
17553990 |
ccacctaaacacatagttactgcacacttgatgatctagaaaaggacatcaccaaaaacgtgagaatcctactcaagaggtcatcacagaaaaatctcat |
17554089 |
T |
|
| Q |
377 |
aatatccacctattattgtattgtatatatccacaagaaccaactgaaactatctttcacgttgagtaggagtttga |
453 |
Q |
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| T |
17554090 |
aatatccacctattattgtattgtatatatccacaagaaccaactgaaactatctttcacgttgagtaggagtttga |
17554166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 261 - 353
Target Start/End: Complemental strand, 1924053 - 1923961
Alignment:
| Q |
261 |
aaatattaaagtaaaattgaatccacccaaccacctaaacacatagttactgcacacttgatgatctagaaaaggacatcaccaaaaacgtga |
353 |
Q |
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| T |
1924053 |
aaatattaaagtaaaattgaatccacccaaccacctaaacacatatttactgcacacttgatgatctagaaaaggacatcaccaaaaacgtga |
1923961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 14 - 190
Target Start/End: Complemental strand, 1931507 - 1931329
Alignment:
| Q |
14 |
gtgttcatgattccactaataaaaggaatatgtgtgaccataatannnnnnnncaaaatctacttgcatgcgatggatttaactatagtcaccaaccaga |
113 |
Q |
| |
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||||| ||||||||||||||| ||| ||||||||||||||||||| ||||| | |||||||||||||||||||||||||| |||||||| ||| |
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| T |
1931507 |
gtgtttatgattccactaatagaagaaatatgtgtgaccataatatttattttcaaaaaccacttgcatgcgatggatttaactatattcaccaactaga |
1931408 |
T |
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| Q |
114 |
aaacataagtctcataccctc---nnnnnnntgcgaacattacacgatcttcacaaggaccacaaaacaattttttaaac |
190 |
Q |
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||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
1931407 |
aaacataagtctcataccctcaaaaaaaaaatgcgagcattacacgatcttcacaa-gaccacaaaacaatttttcaaac |
1931329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 201 - 263
Target Start/End: Complemental strand, 1924629 - 1924567
Alignment:
| Q |
201 |
aaaaccaacctctcattatttccccacctaaacccaacaaaatactaattaagactcactaaa |
263 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||||| ||||||| ||||||| |||| |
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| T |
1924629 |
aaaaccaacctctcattatttccccagctaaatccaacaaaacactaatttagactcaataaa |
1924567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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